Wall clock time and date at job start Sun Mar 29 2020 21:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47420 * 2 1 4 4 C 1.53005 * 109.46768 * 119.99782 * 2 1 3 5 5 C 1.53000 * 109.47167 * 60.00016 * 4 2 1 6 6 C 1.53002 * 109.47320 * 59.99830 * 5 4 2 7 7 C 1.53008 * 109.46995 * 299.99845 * 6 5 4 8 8 C 1.53002 * 109.47074 * 239.99557 * 2 1 3 9 9 H 1.08990 * 109.47355 * 180.02562 * 8 2 1 10 10 C 1.53000 * 109.46776 * 60.00090 * 8 2 1 11 11 N 1.46901 * 109.46769 * 174.99873 * 10 8 2 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.47183 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99585 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00111 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99984 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99870 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47465 * 59.99852 * 17 15 13 19 19 H 1.48504 * 109.46981 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47129 * 299.99804 * 17 15 13 21 21 H 1.08994 * 109.47439 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46964 * 300.00295 * 1 2 3 23 23 H 1.08993 * 109.46700 * 59.99834 * 1 2 3 24 24 H 1.08993 * 109.47016 * 299.99680 * 4 2 1 25 25 H 1.09001 * 109.46946 * 179.97438 * 4 2 1 26 26 H 1.09000 * 109.47090 * 300.00046 * 5 4 2 27 27 H 1.08996 * 109.47224 * 179.97438 * 5 4 2 28 28 H 1.08998 * 109.47141 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47312 * 59.99788 * 6 5 4 30 30 H 1.09000 * 109.47044 * 300.00107 * 7 6 5 31 31 H 1.09001 * 109.47171 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47398 * 295.00168 * 10 8 2 33 33 H 1.09001 * 109.47194 * 55.00349 * 10 8 2 34 34 H 1.00899 * 111.00283 * 303.95539 * 11 10 8 35 35 H 1.08995 * 109.47087 * 299.99901 * 12 11 10 36 36 H 1.09002 * 109.46903 * 59.99922 * 12 11 10 37 37 H 0.97003 * 120.00204 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5299 -2.1637 1.2494 6 6 2.0399 -2.8851 0.0002 7 6 1.5299 -2.1639 -1.2492 8 6 2.0401 -0.7214 -1.2492 9 1 3.1300 -0.7218 -1.2490 10 6 1.5300 -0.0001 -2.4984 11 7 2.1158 -0.6195 -3.6948 12 6 1.6479 0.0491 -4.9164 13 6 2.2680 -0.6126 -6.1201 14 1 2.9425 -1.4460 -5.9905 15 6 1.9750 -0.1532 -7.3866 16 7 1.1541 0.8621 -7.5443 17 14 2.7442 -0.9729 -8.8786 18 1 2.3493 -2.4039 -8.9157 19 1 2.2721 -0.2963 -10.1134 20 1 4.2231 -0.8696 -8.7927 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8899 24 1 1.6767 -0.2074 2.1392 25 1 3.1300 -0.7217 1.2491 26 1 0.4399 -2.1637 1.2493 27 1 1.8936 -2.6777 2.1391 28 1 1.6762 -3.9126 0.0000 29 1 3.1299 -2.8851 0.0001 30 1 0.4399 -2.1638 -1.2491 31 1 1.8929 -2.6780 -2.1391 32 1 0.4437 -0.0770 -2.5443 33 1 1.8184 1.0501 -2.4549 34 1 3.1236 -0.6187 -3.6458 35 1 0.5625 -0.0271 -4.9793 36 1 1.9375 1.0996 -4.8892 37 1 0.9482 1.1855 -8.4353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042862390.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:21 Heat of formation + Delta-G solvation = -55.935732 kcal Electronic energy + Delta-G solvation = -14373.061341 eV Core-core repulsion = 12147.748771 eV Total energy + Delta-G solvation = -2225.312570 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35838 -36.89437 -34.64967 -32.89534 -31.93602 -28.93014 -27.52469 -25.51057 -23.58663 -22.89943 -21.89982 -19.30940 -18.51675 -16.94071 -16.46592 -16.12837 -15.92357 -15.17804 -14.92116 -14.61033 -14.32051 -13.67201 -13.58961 -13.44916 -13.16025 -12.85833 -12.64894 -12.54612 -12.33795 -12.23683 -11.97433 -11.85312 -11.59770 -11.37234 -11.01226 -10.76417 -10.69314 -10.64722 -9.09458 -8.23344 -6.35251 1.40574 1.44679 1.52759 2.39661 3.09647 3.54855 3.77199 3.88751 4.04541 4.25842 4.39050 4.51735 4.53076 4.56233 4.61640 4.78048 4.80517 4.89550 4.93329 5.02588 5.09667 5.12935 5.21256 5.25625 5.28533 5.32838 5.39586 5.45551 5.53557 5.60496 5.66109 5.75888 6.01350 6.44965 6.72377 6.88646 7.35995 8.88312 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058237 B = 0.005846 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.674869 B = 4788.566726 C = 5073.038475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 H 0.063 0.937 4 C -0.108 4.108 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.068 4.068 9 H 0.064 0.936 10 C 0.064 3.936 11 N -0.684 5.684 12 C 0.208 3.792 13 C -0.537 4.537 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.976 3.024 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.265 1.265 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.008 0.992 34 H 0.332 0.668 35 H -0.004 1.004 36 H -0.043 1.043 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -4.399 17.277 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.082 0.918 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.142 4.142 8 C -0.087 4.087 9 H 0.082 0.918 10 C -0.065 4.065 11 N -0.314 5.314 12 C 0.081 3.919 13 C -0.575 4.575 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.800 3.200 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.190 1.190 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.149 0.851 35 H 0.015 0.985 36 H -0.026 1.026 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.885 -4.786 17.116 17.795 hybrid contribution 0.537 0.927 -1.167 1.584 sum 1.422 -3.859 15.949 16.471 Atomic orbital electron populations 1.21957 0.95250 1.02193 1.01282 1.21094 0.96191 0.98761 0.94330 0.91821 1.21523 1.00522 0.95769 0.96713 1.21568 1.01015 0.95396 0.97530 1.21533 1.00597 0.98870 0.94308 1.21439 1.00150 0.94661 0.97951 1.21076 0.99540 0.95538 0.92545 0.91797 1.22064 0.99162 0.94664 0.90618 1.60552 1.12422 1.56786 1.01628 1.19188 0.94395 0.90477 0.87887 1.21526 1.27963 1.16459 0.91585 0.91675 1.25997 0.95621 0.95581 1.02603 1.70093 1.36649 1.27042 1.23803 0.85341 0.78889 0.78562 0.77226 1.19263 1.20698 1.19014 0.91878 0.91607 0.94191 0.90820 0.91970 0.91715 0.90948 0.91757 0.92202 0.92759 0.93028 0.92639 0.97362 0.85094 0.98544 1.02557 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.15 71.98 0.59 -2.84 16 2 C -0.08 -1.97 2.72 -10.79 -0.03 -2.00 16 3 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.11 -2.00 5.45 30.60 0.17 -1.83 16 5 C -0.12 -2.12 5.65 30.60 0.17 -1.95 16 6 C -0.12 -2.49 5.92 30.60 0.18 -2.31 16 7 C -0.10 -2.92 4.82 30.60 0.15 -2.77 16 8 C -0.07 -1.95 2.11 -10.79 -0.02 -1.98 16 9 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 10 C 0.06 2.41 4.57 86.30 0.39 2.80 16 11 N -0.68 -30.74 5.95 -517.91 -3.08 -33.82 16 12 C 0.21 11.68 5.44 85.56 0.47 12.15 16 13 C -0.54 -31.56 9.32 25.60 0.24 -31.32 16 14 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 15 C 0.00 0.00 5.46 84.65 0.46 0.46 16 16 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 17 Si 0.98 44.99 29.54 68.60 2.03 47.02 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H 0.06 1.42 4.81 -2.39 -0.01 1.41 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.05 6.54 -2.39 -0.02 1.03 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.17 6.43 -2.39 -0.02 1.15 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.55 6.43 -2.39 -0.02 1.54 16 31 H 0.05 1.69 7.75 -2.39 -0.02 1.67 16 32 H 0.06 2.17 6.71 -2.39 -0.02 2.15 16 33 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.33 14.21 8.72 -89.69 -0.78 13.42 16 35 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H -0.04 -2.60 8.14 -2.39 -0.02 -2.62 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -63.87 282.77 2.23 -61.63 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.24 Total: 14.35 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 2.76 Total: -31.59 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -2.79 Total: -91.42 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -63.87 2.23 -61.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042862390.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.696 kcal (2) G-P(sol) polarization free energy of solvation -63.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds