Wall clock time and date at job start Sun Mar 29 2020 21:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29025 * 124.91824 * 2 1 4 4 C 1.31788 * 117.12898 * 180.02562 * 3 2 1 5 5 C 1.50690 * 122.75309 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47357 * 274.98204 * 5 4 3 7 7 C 1.46510 * 119.99929 * 269.99985 * 6 5 4 8 8 C 1.36935 * 120.00435 * 89.99837 * 6 5 4 9 9 H 1.08001 * 119.99887 * 22.35625 * 8 6 5 10 10 C 1.38809 * 120.00235 * 202.35181 * 8 6 5 11 11 N 1.31626 * 120.00097 * 11.34261 * 10 8 6 12 12 Si 1.86805 * 120.00136 * 191.33411 * 10 8 6 13 13 H 1.48501 * 109.46837 * 60.00568 * 12 10 8 14 14 H 1.48504 * 109.46862 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47273 * 300.00258 * 12 10 8 16 16 C 1.33645 * 114.49583 * 0.02562 * 4 3 2 17 17 S 1.70985 * 124.91747 * 180.02562 * 2 1 3 18 18 H 1.08999 * 109.47882 * 89.99683 * 1 2 3 19 19 H 1.09002 * 109.47392 * 209.99528 * 1 2 3 20 20 H 1.09004 * 109.46878 * 329.99474 * 1 2 3 21 21 H 1.09005 * 109.47469 * 34.98095 * 5 4 3 22 22 H 1.09001 * 109.47581 * 154.97793 * 5 4 3 23 23 H 1.08999 * 109.46995 * 94.21235 * 7 6 5 24 24 H 1.08992 * 109.46957 * 214.21293 * 7 6 5 25 25 H 1.09001 * 109.47004 * 334.21045 * 7 6 5 26 26 H 0.97000 * 120.00300 * 180.02562 * 11 10 8 27 27 H 1.08002 * 126.03513 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0245 0.0000 6 7 4.7566 2.4746 -1.3757 7 6 5.8300 1.8780 -2.1747 8 6 3.9644 3.4527 -1.9150 9 1 3.4349 4.1365 -1.2681 10 6 3.8420 3.5655 -3.2931 11 7 4.2983 2.6099 -4.0748 12 14 3.0294 5.0735 -4.0383 13 1 3.7864 6.2890 -3.6448 14 1 3.0226 4.9515 -5.5183 15 1 1.6330 5.1784 -3.5443 16 6 3.9354 -0.4007 -0.0015 17 16 2.4856 -1.4020 -0.0006 18 1 -0.3635 0.0001 -1.0276 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 4.1272 2.8476 0.5899 22 1 5.4747 1.6951 0.4341 23 1 5.4270 1.0599 -2.7716 24 1 6.2549 2.6343 -2.8346 25 1 6.6068 1.4962 -1.5122 26 1 4.2131 2.6888 -5.0378 27 1 4.9545 -0.7582 -0.0025 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044609159.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:16 Heat of formation + Delta-G solvation = 66.338686 kcal Electronic energy + Delta-G solvation = -12054.736411 eV Core-core repulsion = 9940.386828 eV Total energy + Delta-G solvation = -2114.349582 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.13885 -35.40444 -32.23500 -30.76463 -27.93905 -26.52997 -25.59600 -22.59687 -20.91892 -19.06303 -16.91231 -16.66384 -14.94333 -14.66123 -14.30191 -13.49068 -13.39734 -13.14703 -12.88019 -12.05494 -11.92266 -11.73787 -11.39125 -10.83080 -10.72015 -10.59198 -10.34287 -10.00306 -9.83973 -8.96707 -8.76071 -8.52594 -8.06369 -6.79255 -5.70916 -3.14483 1.35599 1.98566 2.34244 3.41767 3.46245 3.47499 3.58907 4.55072 4.67326 5.41784 5.50503 5.67232 5.73096 5.73956 5.85403 6.07430 6.14817 6.43629 6.68425 6.75529 6.90818 7.37398 7.72518 7.85862 8.39383 8.54390 9.24895 9.85323 10.33363 11.34229 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.035027 B = 0.010357 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.186683 B = 2702.747107 C = 3097.939557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.045 3.955 3 N -0.446 5.446 4 C 0.076 3.924 5 C 0.211 3.789 6 N -0.584 5.584 7 C 0.162 3.838 8 C -0.244 4.244 9 H 0.072 0.928 10 C 0.001 3.999 11 N -0.909 5.909 12 Si 0.908 3.092 13 H -0.283 1.283 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.263 4.263 17 S 0.046 5.954 18 H 0.081 0.919 19 H 0.073 0.927 20 H 0.084 0.916 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.027 0.973 24 H 0.049 0.951 25 H -0.001 1.001 26 H 0.252 0.748 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 -6.764 7.891 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.235 4.235 3 N -0.161 5.161 4 C -0.058 4.058 5 C 0.080 3.920 6 N -0.304 5.304 7 C 0.017 3.983 8 C -0.373 4.373 9 H 0.090 0.910 10 C -0.197 4.197 11 N -0.554 5.554 12 Si 0.738 3.262 13 H -0.209 1.209 14 H -0.217 1.217 15 H -0.209 1.209 16 C -0.402 4.402 17 S 0.298 5.702 18 H 0.099 0.901 19 H 0.092 0.908 20 H 0.103 0.897 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.017 0.983 26 H 0.063 0.937 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.468 -7.282 7.663 11.126 hybrid contribution 0.074 1.175 -0.813 1.431 sum -3.394 -6.107 6.850 9.784 Atomic orbital electron populations 1.20342 0.86071 1.03298 1.03477 1.26968 1.01274 0.90709 1.04528 1.66111 1.05218 1.30655 1.14074 1.21942 0.90697 0.95940 0.97249 1.19717 0.92405 0.90941 0.88897 1.44204 1.34334 1.41711 1.10167 1.20859 0.87318 0.97733 0.92343 1.19240 1.23335 1.04815 0.89956 0.91002 1.25078 0.99907 0.98010 0.96744 1.70069 1.50333 1.31640 1.03344 0.86276 0.79504 0.82575 0.77873 1.20941 1.21681 1.20868 1.26630 1.01603 0.95381 1.16599 1.83480 1.00456 1.14778 1.71467 0.90052 0.90844 0.89685 0.91920 0.92415 0.95416 0.93185 0.98286 0.93739 0.81692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.46 36.00 0.38 -0.59 15 2 C 0.04 0.81 7.39 -13.46 -0.10 0.71 15 3 N -0.45 -9.80 10.53 -8.06 -0.08 -9.89 15 4 C 0.08 1.64 6.32 -84.23 -0.53 1.11 15 5 C 0.21 4.63 6.15 -5.20 -0.03 4.59 15 6 N -0.58 -15.23 2.91 -182.50 -0.53 -15.76 15 7 C 0.16 4.08 9.01 59.85 0.54 4.62 15 8 C -0.24 -6.95 9.67 -15.06 -0.15 -7.10 15 9 H 0.07 2.03 7.84 -52.49 -0.41 1.62 15 10 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 15 11 N -0.91 -27.26 10.59 55.49 0.59 -26.67 15 12 Si 0.91 22.61 29.57 -169.99 -5.03 17.58 15 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 15 15 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 16 C -0.26 -4.94 11.11 29.12 0.32 -4.62 15 17 S 0.05 0.76 23.18 -107.50 -2.49 -1.73 15 18 H 0.08 1.08 8.14 -51.93 -0.42 0.65 15 19 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 21 H 0.06 1.36 8.03 -51.93 -0.42 0.94 15 22 H 0.06 1.09 7.82 -51.93 -0.41 0.68 15 23 H 0.03 0.76 7.42 -51.93 -0.39 0.38 15 24 H 0.05 1.34 7.19 -51.93 -0.37 0.97 15 25 H 0.00 -0.03 7.84 -51.93 -0.41 -0.44 15 26 H 0.25 7.36 8.31 -40.82 -0.34 7.02 15 27 H 0.17 2.73 8.06 -52.49 -0.42 2.31 15 LS Contribution 250.28 15.07 3.77 3.77 Total: -1.00 -32.16 250.28 -6.66 -38.82 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -3.23 Total: -4.77 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 0.34 Total: -1.35 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.03 Total: -52.32 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.49 Total: -1.73 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.16 -6.66 -38.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044609159.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.162 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds