Wall clock time and date at job start Sun Mar 29 2020 21:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29025 * 124.91824 * 2 1 4 4 C 1.31788 * 117.12898 * 180.02562 * 3 2 1 5 5 C 1.50690 * 122.75309 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47357 * 274.98204 * 5 4 3 7 7 C 1.46510 * 119.99929 * 269.99985 * 6 5 4 8 8 C 1.36935 * 120.00435 * 89.99837 * 6 5 4 9 9 H 1.08001 * 119.99887 * 22.35625 * 8 6 5 10 10 C 1.38809 * 120.00235 * 202.35181 * 8 6 5 11 11 N 1.31626 * 120.00097 * 11.34261 * 10 8 6 12 12 Si 1.86805 * 120.00136 * 191.33411 * 10 8 6 13 13 H 1.48501 * 109.46837 * 60.00568 * 12 10 8 14 14 H 1.48504 * 109.46862 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47273 * 300.00258 * 12 10 8 16 16 C 1.33645 * 114.49583 * 0.02562 * 4 3 2 17 17 S 1.70985 * 124.91747 * 180.02562 * 2 1 3 18 18 H 1.08999 * 109.47882 * 89.99683 * 1 2 3 19 19 H 1.09002 * 109.47392 * 209.99528 * 1 2 3 20 20 H 1.09004 * 109.46878 * 329.99474 * 1 2 3 21 21 H 1.09005 * 109.47469 * 34.98095 * 5 4 3 22 22 H 1.09001 * 109.47581 * 154.97793 * 5 4 3 23 23 H 1.08999 * 109.46995 * 94.21235 * 7 6 5 24 24 H 1.08992 * 109.46957 * 214.21293 * 7 6 5 25 25 H 1.09001 * 109.47004 * 334.21045 * 7 6 5 26 26 H 0.97000 * 120.00300 * 180.02562 * 11 10 8 27 27 H 1.08002 * 126.03513 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 -0.0005 5 6 4.5307 2.0245 0.0000 6 7 4.7566 2.4746 -1.3757 7 6 5.8300 1.8780 -2.1747 8 6 3.9644 3.4527 -1.9150 9 1 3.4349 4.1365 -1.2681 10 6 3.8420 3.5655 -3.2931 11 7 4.2983 2.6099 -4.0748 12 14 3.0294 5.0735 -4.0383 13 1 3.7864 6.2890 -3.6448 14 1 3.0226 4.9515 -5.5183 15 1 1.6330 5.1784 -3.5443 16 6 3.9354 -0.4007 -0.0015 17 16 2.4856 -1.4020 -0.0006 18 1 -0.3635 0.0001 -1.0276 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 4.1272 2.8476 0.5899 22 1 5.4747 1.6951 0.4341 23 1 5.4270 1.0599 -2.7716 24 1 6.2549 2.6343 -2.8346 25 1 6.6068 1.4962 -1.5122 26 1 4.2131 2.6888 -5.0378 27 1 4.9545 -0.7582 -0.0025 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044609159.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:15 Heat of formation + Delta-G solvation = 45.120743 kcal Electronic energy + Delta-G solvation = -12055.656490 eV Core-core repulsion = 9940.386828 eV Total energy + Delta-G solvation = -2115.269661 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64975 -37.32916 -33.91030 -32.52895 -29.39543 -28.32218 -27.58651 -24.23055 -22.69927 -20.54027 -18.76565 -18.37772 -16.89516 -16.17065 -15.91078 -15.33251 -14.98527 -14.90677 -14.22645 -13.67095 -13.37501 -13.25293 -12.95300 -12.76984 -12.62356 -12.31569 -12.19415 -12.06062 -11.81559 -10.66553 -10.41692 -10.18531 -9.50199 -8.85134 -7.85031 -5.32079 -0.06747 0.61724 0.89829 1.43264 1.46107 1.52366 2.02123 2.51927 3.27255 3.41645 3.81375 4.19693 4.39668 4.51730 4.59332 4.67335 4.80424 4.83932 5.05250 5.08322 5.30038 5.40531 5.60713 5.70016 6.30126 7.06241 7.15547 7.82317 8.24576 9.18293 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.035027 B = 0.010357 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.186683 B = 2702.747107 C = 3097.939557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.028 3.972 3 N -0.497 5.497 4 C 0.047 3.953 5 C 0.211 3.789 6 N -0.603 5.603 7 C 0.178 3.822 8 C -0.251 4.251 9 H 0.065 0.935 10 C -0.054 4.054 11 N -0.940 5.940 12 Si 0.969 3.031 13 H -0.274 1.274 14 H -0.292 1.292 15 H -0.281 1.281 16 C -0.270 4.270 17 S 0.122 5.878 18 H 0.085 0.915 19 H 0.109 0.891 20 H 0.086 0.914 21 H 0.054 0.946 22 H 0.088 0.912 23 H -0.002 1.002 24 H 0.023 0.977 25 H 0.038 0.962 26 H 0.247 0.753 27 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.692 -7.908 8.813 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.250 4.250 3 N -0.213 5.213 4 C -0.087 4.087 5 C 0.082 3.918 6 N -0.324 5.324 7 C 0.033 3.967 8 C -0.382 4.382 9 H 0.083 0.917 10 C -0.248 4.248 11 N -0.587 5.587 12 Si 0.797 3.203 13 H -0.199 1.199 14 H -0.218 1.218 15 H -0.207 1.207 16 C -0.410 4.410 17 S 0.375 5.625 18 H 0.103 0.897 19 H 0.127 0.873 20 H 0.105 0.895 21 H 0.073 0.927 22 H 0.106 0.894 23 H 0.016 0.984 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.113 -8.447 8.633 12.759 hybrid contribution 0.236 1.378 -0.939 1.685 sum -3.877 -7.069 7.693 11.144 Atomic orbital electron populations 1.20547 0.83237 1.05219 1.04254 1.27738 1.03263 0.91039 1.02974 1.66104 1.05817 1.32953 1.16449 1.21728 0.90871 0.96579 0.99536 1.19745 0.94153 0.91326 0.86620 1.44296 1.34589 1.42239 1.11281 1.20587 0.87850 0.95793 0.92432 1.19434 1.22873 1.05635 0.90218 0.91688 1.25788 1.01158 1.00697 0.97164 1.70238 1.52143 1.33280 1.02989 0.85322 0.78526 0.79754 0.76745 1.19941 1.21815 1.20739 1.26975 1.03916 0.95457 1.14606 1.83162 0.97650 1.12181 1.69482 0.89657 0.87253 0.89508 0.92716 0.89399 0.98401 0.95855 0.94362 0.94402 0.79652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.79 10.46 71.23 0.75 -1.04 15 2 C 0.03 0.97 7.39 88.52 0.65 1.63 15 3 N -0.50 -21.55 10.53 -179.41 -1.89 -23.44 15 4 C 0.05 1.97 6.32 41.52 0.26 2.23 15 5 C 0.21 9.12 6.15 85.63 0.53 9.65 15 6 N -0.60 -31.54 2.91 -731.31 -2.13 -33.66 15 7 C 0.18 8.99 9.01 127.77 1.15 10.14 15 8 C -0.25 -14.53 9.67 84.03 0.81 -13.72 15 9 H 0.07 3.75 7.84 -2.91 -0.02 3.73 15 10 C -0.05 -3.13 5.13 84.86 0.44 -2.70 15 11 N -0.94 -57.53 10.59 21.65 0.23 -57.30 15 12 Si 0.97 47.12 29.57 68.60 2.03 49.15 15 13 H -0.27 -12.75 7.11 99.48 0.71 -12.04 15 14 H -0.29 -14.13 7.11 99.48 0.71 -13.42 15 15 H -0.28 -13.48 7.11 99.48 0.71 -12.77 15 16 C -0.27 -9.57 11.11 66.78 0.74 -8.83 15 17 S 0.12 3.64 23.18 -56.49 -1.31 2.33 15 18 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 19 H 0.11 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.09 2.12 8.14 -2.38 -0.02 2.10 15 21 H 0.05 2.39 8.03 -2.38 -0.02 2.37 15 22 H 0.09 3.16 7.82 -2.39 -0.02 3.14 15 23 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 15 24 H 0.02 1.25 7.19 -2.39 -0.02 1.24 15 25 H 0.04 1.58 7.84 -2.39 -0.02 1.56 15 26 H 0.25 14.72 8.31 -92.71 -0.77 13.94 15 27 H 0.19 5.61 8.06 -2.91 -0.02 5.58 15 Total: -1.00 -69.79 250.28 3.42 -66.37 By element: Atomic # 1 Polarization: -1.97 SS G_CDS: 1.15 Total: -0.81 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 5.33 Total: -2.65 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -3.79 Total: -114.39 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.31 Total: 2.33 kcal Total: -69.79 3.42 -66.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044609159.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.492 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds