Wall clock time and date at job start Sun Mar 29 2020 21:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47096 * 2 1 4 4 C 1.36940 * 119.99718 * 269.59613 * 3 2 1 5 5 H 1.07993 * 120.00433 * 325.48353 * 4 3 2 6 6 C 1.38817 * 119.99697 * 145.48236 * 4 3 2 7 7 N 1.31624 * 120.00111 * 337.22953 * 6 4 3 8 8 Si 1.86796 * 119.99982 * 157.22620 * 6 4 3 9 9 H 1.48508 * 109.46904 * 60.00247 * 8 6 4 10 10 H 1.48498 * 109.47138 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47294 * 300.00681 * 8 6 4 12 12 C 1.46503 * 120.00057 * 89.60057 * 3 2 1 13 13 C 1.52993 * 109.47006 * 89.99971 * 12 3 2 14 14 C 1.53003 * 109.47347 * 64.99792 * 13 12 3 15 15 C 1.52999 * 109.46915 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47459 * 299.99977 * 15 14 13 17 17 C 1.53007 * 109.46788 * 60.00356 * 16 15 14 18 18 C 1.52996 * 109.47153 * 185.00107 * 13 12 3 19 19 H 1.09000 * 109.47232 * 300.00252 * 1 2 3 20 20 H 1.09002 * 109.47119 * 59.99974 * 1 2 3 21 21 H 1.08999 * 109.47482 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46764 * 239.99971 * 2 1 3 23 23 H 1.09002 * 109.47119 * 120.00025 * 2 1 3 24 24 H 0.96995 * 119.99832 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46725 * 329.99572 * 12 3 2 26 26 H 1.09000 * 109.46853 * 209.99935 * 12 3 2 27 27 H 1.09002 * 109.47178 * 304.99748 * 13 12 3 28 28 H 1.08996 * 109.47277 * 299.99604 * 14 13 12 29 29 H 1.09000 * 109.47082 * 60.00392 * 14 13 12 30 30 H 1.09004 * 109.47063 * 180.02562 * 15 14 13 31 31 H 1.09002 * 109.47201 * 60.00207 * 15 14 13 32 32 H 1.08993 * 109.46997 * 300.00385 * 16 15 14 33 33 H 1.09000 * 109.46916 * 179.97438 * 16 15 14 34 34 H 1.09003 * 109.46892 * 179.97438 * 17 16 15 35 35 H 1.08993 * 109.47327 * 60.00231 * 17 16 15 36 36 H 1.09002 * 109.46785 * 299.99881 * 18 13 12 37 37 H 1.09000 * 109.47655 * 59.99679 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2545 2.0239 -1.1859 5 1 2.6273 1.4706 -2.0351 6 6 2.0145 3.3867 -1.2966 7 7 1.1726 3.9756 -0.4739 8 14 2.8865 4.3848 -2.6129 9 1 2.5370 3.8490 -3.9531 10 1 2.4604 5.8043 -2.5213 11 1 4.3549 4.2942 -2.4113 12 6 2.2542 2.0748 1.2687 13 6 3.6962 1.8354 1.7204 14 6 4.6577 2.4817 0.7209 15 6 6.0997 2.2428 1.1731 16 6 6.3098 2.8620 2.5563 17 6 5.3483 2.2157 3.5557 18 6 3.9067 2.4541 3.1037 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.0052 4.9279 -0.5510 25 1 1.5684 1.6925 2.0247 26 1 2.0881 3.1437 1.1347 27 1 3.8887 0.7636 1.7687 28 1 4.5078 2.0408 -0.2645 29 1 4.4653 3.5535 0.6727 30 1 6.7847 2.7035 0.4613 31 1 6.2924 1.1710 1.2217 32 1 6.1171 3.9336 2.5077 33 1 7.3370 2.6913 2.8785 34 1 5.4983 2.6565 4.5413 35 1 5.5410 1.1440 3.6044 36 1 3.7143 3.5260 3.0554 37 1 3.2218 1.9938 3.8158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:57 Heat of formation + Delta-G solvation = -14.996088 kcal Electronic energy + Delta-G solvation = -15150.010181 eV Core-core repulsion = 12926.472888 eV Total energy + Delta-G solvation = -2223.537294 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.12731 -35.50025 -31.72562 -31.11090 -30.07977 -28.26489 -25.33144 -23.26907 -21.86063 -21.07656 -19.70967 -18.83367 -16.55036 -14.94245 -14.50361 -13.97117 -13.91501 -13.62518 -13.45414 -12.92758 -12.49519 -12.12703 -11.63823 -11.54416 -11.16738 -11.11663 -10.91068 -10.73241 -10.60884 -10.47203 -10.26067 -9.98664 -9.89096 -9.71528 -9.49479 -9.26734 -9.19808 -8.36027 -6.48505 -5.68771 -3.21679 3.40587 3.46777 3.49359 4.55201 5.22197 5.28939 5.35854 5.44760 5.60385 5.90061 5.94319 6.09348 6.10701 6.14877 6.19188 6.27562 6.28093 6.46364 6.49692 6.56332 6.65937 6.66460 6.74075 6.78123 6.83658 7.04794 7.09942 7.22212 7.25194 7.35765 7.51075 7.85422 7.93269 8.60225 9.29178 9.93747 10.51122 11.30575 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.013488 C = 0.009933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.926564 B = 2075.482892 C = 2818.328819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 N -0.585 5.585 4 C -0.248 4.248 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.887 5.887 8 Si 0.886 3.114 9 H -0.283 1.283 10 H -0.292 1.292 11 H -0.281 1.281 12 C 0.147 3.853 13 C -0.098 4.098 14 C -0.099 4.099 15 C -0.121 4.121 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.113 4.113 19 H 0.041 0.959 20 H 0.053 0.947 21 H 0.028 0.972 22 H 0.039 0.961 23 H 0.030 0.970 24 H 0.253 0.747 25 H 0.017 0.983 26 H 0.099 0.901 27 H 0.047 0.953 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 -3.264 5.490 8.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 N -0.306 5.306 4 C -0.378 4.378 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.531 5.531 8 Si 0.715 3.285 9 H -0.209 1.209 10 H -0.218 1.218 11 H -0.207 1.207 12 C 0.021 3.979 13 C -0.119 4.119 14 C -0.137 4.137 15 C -0.159 4.159 16 C -0.154 4.154 17 C -0.152 4.152 18 C -0.151 4.151 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.017 -3.099 5.483 8.711 hybrid contribution 0.371 0.636 -0.635 0.972 sum 6.388 -2.463 4.848 8.389 Atomic orbital electron populations 1.22291 1.00006 0.98139 1.01772 1.20842 0.91760 0.87949 0.97872 1.43866 1.74578 1.09714 1.02399 1.18928 1.36664 0.91336 0.90838 0.92421 1.24994 0.97367 0.98589 0.97815 1.69978 1.33003 1.10331 1.39742 0.86630 0.80345 0.79430 0.82063 1.20938 1.21760 1.20721 1.21014 0.89818 1.01595 0.85463 1.21705 0.99511 0.98000 0.92706 1.21452 0.91339 1.00525 1.00352 1.21622 0.98795 0.99803 0.95656 1.21518 0.97906 1.00029 0.95958 1.21493 0.96068 1.00100 0.97566 1.21540 0.94947 1.00965 0.97634 0.93944 0.92792 0.95328 0.94245 0.95140 0.93721 0.96449 0.88399 0.93471 0.89973 0.93096 0.93214 0.92938 0.92444 0.93320 0.93176 0.92705 0.92414 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 10.24 37.16 0.38 -2.96 16 2 C 0.14 3.06 6.39 -4.04 -0.03 3.04 16 3 N -0.59 -14.40 2.32 -173.24 -0.40 -14.80 16 4 C -0.25 -6.62 7.42 -15.06 -0.11 -6.74 16 5 H 0.06 1.56 7.93 -52.49 -0.42 1.14 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -25.33 11.34 55.49 0.63 -24.70 16 8 Si 0.89 21.49 29.61 -169.99 -5.03 16.46 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.15 3.45 4.80 -4.04 -0.02 3.43 16 13 C -0.10 -1.96 2.40 -90.62 -0.22 -2.17 16 14 C -0.10 -2.02 4.76 -26.73 -0.13 -2.15 16 15 C -0.12 -2.03 5.92 -26.73 -0.16 -2.19 16 16 C -0.12 -1.74 5.92 -26.73 -0.16 -1.89 16 17 C -0.11 -1.69 5.92 -26.75 -0.16 -1.85 16 18 C -0.11 -1.93 5.20 -26.76 -0.14 -2.07 16 19 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 20 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 23 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 24 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16 26 H 0.10 2.60 5.34 -51.93 -0.28 2.32 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.88 6.35 -51.93 -0.33 1.55 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 286.47 15.07 4.32 4.32 Total: -1.00 -27.44 286.47 -8.22 -35.66 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.91 Total: -1.62 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -0.82 Total: -15.31 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.23 Total: -39.50 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.44 -8.22 -35.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.660 kcal (2) G-P(sol) polarization free energy of solvation -27.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds