Wall clock time and date at job start Sun Mar 29 2020 21:44:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46501 * 109.47096 * 2 1
4 4 C 1.36940 * 119.99718 * 269.59613 * 3 2 1
5 5 H 1.07993 * 120.00433 * 325.48353 * 4 3 2
6 6 C 1.38817 * 119.99697 * 145.48236 * 4 3 2
7 7 N 1.31624 * 120.00111 * 337.22953 * 6 4 3
8 8 Si 1.86796 * 119.99982 * 157.22620 * 6 4 3
9 9 H 1.48508 * 109.46904 * 60.00247 * 8 6 4
10 10 H 1.48498 * 109.47138 * 179.97438 * 8 6 4
11 11 H 1.48496 * 109.47294 * 300.00681 * 8 6 4
12 12 C 1.46503 * 120.00057 * 89.60057 * 3 2 1
13 13 C 1.52993 * 109.47006 * 89.99971 * 12 3 2
14 14 C 1.53003 * 109.47347 * 64.99792 * 13 12 3
15 15 C 1.52999 * 109.46915 * 179.97438 * 14 13 12
16 16 C 1.53001 * 109.47459 * 299.99977 * 15 14 13
17 17 C 1.53007 * 109.46788 * 60.00356 * 16 15 14
18 18 C 1.52996 * 109.47153 * 185.00107 * 13 12 3
19 19 H 1.09000 * 109.47232 * 300.00252 * 1 2 3
20 20 H 1.09002 * 109.47119 * 59.99974 * 1 2 3
21 21 H 1.08999 * 109.47482 * 179.97438 * 1 2 3
22 22 H 1.09003 * 109.46764 * 239.99971 * 2 1 3
23 23 H 1.09002 * 109.47119 * 120.00025 * 2 1 3
24 24 H 0.96995 * 119.99832 * 179.97438 * 7 6 4
25 25 H 1.08998 * 109.46725 * 329.99572 * 12 3 2
26 26 H 1.09000 * 109.46853 * 209.99935 * 12 3 2
27 27 H 1.09002 * 109.47178 * 304.99748 * 13 12 3
28 28 H 1.08996 * 109.47277 * 299.99604 * 14 13 12
29 29 H 1.09000 * 109.47082 * 60.00392 * 14 13 12
30 30 H 1.09004 * 109.47063 * 180.02562 * 15 14 13
31 31 H 1.09002 * 109.47201 * 60.00207 * 15 14 13
32 32 H 1.08993 * 109.46997 * 300.00385 * 16 15 14
33 33 H 1.09000 * 109.46916 * 179.97438 * 16 15 14
34 34 H 1.09003 * 109.46892 * 179.97438 * 17 16 15
35 35 H 1.08993 * 109.47327 * 60.00231 * 17 16 15
36 36 H 1.09002 * 109.46785 * 299.99881 * 18 13 12
37 37 H 1.09000 * 109.47655 * 59.99679 * 18 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2545 2.0239 -1.1859
5 1 2.6273 1.4706 -2.0351
6 6 2.0145 3.3867 -1.2966
7 7 1.1726 3.9756 -0.4739
8 14 2.8865 4.3848 -2.6129
9 1 2.5370 3.8490 -3.9531
10 1 2.4604 5.8043 -2.5213
11 1 4.3549 4.2942 -2.4113
12 6 2.2542 2.0748 1.2687
13 6 3.6962 1.8354 1.7204
14 6 4.6577 2.4817 0.7209
15 6 6.0997 2.2428 1.1731
16 6 6.3098 2.8620 2.5563
17 6 5.3483 2.2157 3.5557
18 6 3.9067 2.4541 3.1037
19 1 -0.3634 0.5139 0.8900
20 1 -0.3633 0.5138 -0.8900
21 1 -0.3634 -1.0276 -0.0005
22 1 1.8933 -0.5139 -0.8900
23 1 1.8934 -0.5138 0.8900
24 1 1.0052 4.9279 -0.5510
25 1 1.5684 1.6925 2.0247
26 1 2.0881 3.1437 1.1347
27 1 3.8887 0.7636 1.7687
28 1 4.5078 2.0408 -0.2645
29 1 4.4653 3.5535 0.6727
30 1 6.7847 2.7035 0.4613
31 1 6.2924 1.1710 1.2217
32 1 6.1171 3.9336 2.5077
33 1 7.3370 2.6913 2.8785
34 1 5.4983 2.6565 4.5413
35 1 5.5410 1.1440 3.6044
36 1 3.7143 3.5260 3.0554
37 1 3.2218 1.9938 3.8158
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000045061177.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:44:57
Heat of formation + Delta-G solvation = -14.996088 kcal
Electronic energy + Delta-G solvation = -15150.010181 eV
Core-core repulsion = 12926.472888 eV
Total energy + Delta-G solvation = -2223.537294 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-38.12731 -35.50025 -31.72562 -31.11090 -30.07977 -28.26489 -25.33144 -23.26907
-21.86063 -21.07656 -19.70967 -18.83367 -16.55036 -14.94245 -14.50361 -13.97117
-13.91501 -13.62518 -13.45414 -12.92758 -12.49519 -12.12703 -11.63823 -11.54416
-11.16738 -11.11663 -10.91068 -10.73241 -10.60884 -10.47203 -10.26067 -9.98664
-9.89096 -9.71528 -9.49479 -9.26734 -9.19808 -8.36027 -6.48505 -5.68771
-3.21679 3.40587 3.46777 3.49359 4.55201 5.22197 5.28939 5.35854
5.44760 5.60385 5.90061 5.94319 6.09348 6.10701 6.14877 6.19188
6.27562 6.28093 6.46364 6.49692 6.56332 6.65937 6.66460 6.74075
6.78123 6.83658 7.04794 7.09942 7.22212 7.25194 7.35765 7.51075
7.85422 7.93269 8.60225 9.29178 9.93747 10.51122 11.30575
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.023252 B = 0.013488 C = 0.009933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1203.926564 B = 2075.482892 C = 2818.328819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.142 3.858
3 N -0.585 5.585
4 C -0.248 4.248
5 H 0.058 0.942
6 C 0.012 3.988
7 N -0.887 5.887
8 Si 0.886 3.114
9 H -0.283 1.283
10 H -0.292 1.292
11 H -0.281 1.281
12 C 0.147 3.853
13 C -0.098 4.098
14 C -0.099 4.099
15 C -0.121 4.121
16 C -0.117 4.117
17 C -0.115 4.115
18 C -0.113 4.113
19 H 0.041 0.959
20 H 0.053 0.947
21 H 0.028 0.972
22 H 0.039 0.961
23 H 0.030 0.970
24 H 0.253 0.747
25 H 0.017 0.983
26 H 0.099 0.901
27 H 0.047 0.953
28 H 0.082 0.918
29 H 0.050 0.950
30 H 0.049 0.951
31 H 0.052 0.948
32 H 0.057 0.943
33 H 0.048 0.952
34 H 0.049 0.951
35 H 0.054 0.946
36 H 0.057 0.943
37 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.092 -3.264 5.490 8.826
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.016 3.984
3 N -0.306 5.306
4 C -0.378 4.378
5 H 0.076 0.924
6 C -0.188 4.188
7 N -0.531 5.531
8 Si 0.715 3.285
9 H -0.209 1.209
10 H -0.218 1.218
11 H -0.207 1.207
12 C 0.021 3.979
13 C -0.119 4.119
14 C -0.137 4.137
15 C -0.159 4.159
16 C -0.154 4.154
17 C -0.152 4.152
18 C -0.151 4.151
19 H 0.061 0.939
20 H 0.072 0.928
21 H 0.047 0.953
22 H 0.058 0.942
23 H 0.049 0.951
24 H 0.063 0.937
25 H 0.036 0.964
26 H 0.116 0.884
27 H 0.065 0.935
28 H 0.100 0.900
29 H 0.069 0.931
30 H 0.068 0.932
31 H 0.071 0.929
32 H 0.076 0.924
33 H 0.067 0.933
34 H 0.068 0.932
35 H 0.073 0.927
36 H 0.076 0.924
37 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 6.017 -3.099 5.483 8.711
hybrid contribution 0.371 0.636 -0.635 0.972
sum 6.388 -2.463 4.848 8.389
Atomic orbital electron populations
1.22291 1.00006 0.98139 1.01772 1.20842 0.91760 0.87949 0.97872
1.43866 1.74578 1.09714 1.02399 1.18928 1.36664 0.91336 0.90838
0.92421 1.24994 0.97367 0.98589 0.97815 1.69978 1.33003 1.10331
1.39742 0.86630 0.80345 0.79430 0.82063 1.20938 1.21760 1.20721
1.21014 0.89818 1.01595 0.85463 1.21705 0.99511 0.98000 0.92706
1.21452 0.91339 1.00525 1.00352 1.21622 0.98795 0.99803 0.95656
1.21518 0.97906 1.00029 0.95958 1.21493 0.96068 1.00100 0.97566
1.21540 0.94947 1.00965 0.97634 0.93944 0.92792 0.95328 0.94245
0.95140 0.93721 0.96449 0.88399 0.93471 0.89973 0.93096 0.93214
0.92938 0.92444 0.93320 0.93176 0.92705 0.92414 0.93070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.34 10.24 37.16 0.38 -2.96 16
2 C 0.14 3.06 6.39 -4.04 -0.03 3.04 16
3 N -0.59 -14.40 2.32 -173.24 -0.40 -14.80 16
4 C -0.25 -6.62 7.42 -15.06 -0.11 -6.74 16
5 H 0.06 1.56 7.93 -52.49 -0.42 1.14 16
6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16
7 N -0.89 -25.33 11.34 55.49 0.63 -24.70 16
8 Si 0.89 21.49 29.61 -169.99 -5.03 16.46 16
9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
12 C 0.15 3.45 4.80 -4.04 -0.02 3.43 16
13 C -0.10 -1.96 2.40 -90.62 -0.22 -2.17 16
14 C -0.10 -2.02 4.76 -26.73 -0.13 -2.15 16
15 C -0.12 -2.03 5.92 -26.73 -0.16 -2.19 16
16 C -0.12 -1.74 5.92 -26.73 -0.16 -1.89 16
17 C -0.11 -1.69 5.92 -26.75 -0.16 -1.85 16
18 C -0.11 -1.93 5.20 -26.76 -0.14 -2.07 16
19 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16
20 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16
21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16
22 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16
23 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16
24 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
25 H 0.02 0.40 8.07 -51.93 -0.42 -0.02 16
26 H 0.10 2.60 5.34 -51.93 -0.28 2.32 16
27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
28 H 0.08 1.88 6.35 -51.93 -0.33 1.55 16
29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16
36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
LS Contribution 286.47 15.07 4.32 4.32
Total: -1.00 -27.44 286.47 -8.22 -35.66
By element:
Atomic # 1 Polarization: 5.29 SS G_CDS: -6.91 Total: -1.62 kcal
Atomic # 6 Polarization: -14.49 SS G_CDS: -0.82 Total: -15.31 kcal
Atomic # 7 Polarization: -39.73 SS G_CDS: 0.23 Total: -39.50 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -27.44 -8.22 -35.66 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000045061177.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.660 kcal
(2) G-P(sol) polarization free energy of solvation -27.435 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.996 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds