Wall clock time and date at job start Sun Mar 29 2020 21:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47096 * 2 1 4 4 C 1.36940 * 119.99718 * 269.59613 * 3 2 1 5 5 H 1.07993 * 120.00433 * 325.48353 * 4 3 2 6 6 C 1.38817 * 119.99697 * 145.48236 * 4 3 2 7 7 N 1.31624 * 120.00111 * 337.22953 * 6 4 3 8 8 Si 1.86796 * 119.99982 * 157.22620 * 6 4 3 9 9 H 1.48508 * 109.46904 * 60.00247 * 8 6 4 10 10 H 1.48498 * 109.47138 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47294 * 300.00681 * 8 6 4 12 12 C 1.46503 * 120.00057 * 89.60057 * 3 2 1 13 13 C 1.52993 * 109.47006 * 89.99971 * 12 3 2 14 14 C 1.53003 * 109.47347 * 64.99792 * 13 12 3 15 15 C 1.52999 * 109.46915 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47459 * 299.99977 * 15 14 13 17 17 C 1.53007 * 109.46788 * 60.00356 * 16 15 14 18 18 C 1.52996 * 109.47153 * 185.00107 * 13 12 3 19 19 H 1.09000 * 109.47232 * 300.00252 * 1 2 3 20 20 H 1.09002 * 109.47119 * 59.99974 * 1 2 3 21 21 H 1.08999 * 109.47482 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46764 * 239.99971 * 2 1 3 23 23 H 1.09002 * 109.47119 * 120.00025 * 2 1 3 24 24 H 0.96995 * 119.99832 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46725 * 329.99572 * 12 3 2 26 26 H 1.09000 * 109.46853 * 209.99935 * 12 3 2 27 27 H 1.09002 * 109.47178 * 304.99748 * 13 12 3 28 28 H 1.08996 * 109.47277 * 299.99604 * 14 13 12 29 29 H 1.09000 * 109.47082 * 60.00392 * 14 13 12 30 30 H 1.09004 * 109.47063 * 180.02562 * 15 14 13 31 31 H 1.09002 * 109.47201 * 60.00207 * 15 14 13 32 32 H 1.08993 * 109.46997 * 300.00385 * 16 15 14 33 33 H 1.09000 * 109.46916 * 179.97438 * 16 15 14 34 34 H 1.09003 * 109.46892 * 179.97438 * 17 16 15 35 35 H 1.08993 * 109.47327 * 60.00231 * 17 16 15 36 36 H 1.09002 * 109.46785 * 299.99881 * 18 13 12 37 37 H 1.09000 * 109.47655 * 59.99679 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2545 2.0239 -1.1859 5 1 2.6273 1.4706 -2.0351 6 6 2.0145 3.3867 -1.2966 7 7 1.1726 3.9756 -0.4739 8 14 2.8865 4.3848 -2.6129 9 1 2.5370 3.8490 -3.9531 10 1 2.4604 5.8043 -2.5213 11 1 4.3549 4.2942 -2.4113 12 6 2.2542 2.0748 1.2687 13 6 3.6962 1.8354 1.7204 14 6 4.6577 2.4817 0.7209 15 6 6.0997 2.2428 1.1731 16 6 6.3098 2.8620 2.5563 17 6 5.3483 2.2157 3.5557 18 6 3.9067 2.4541 3.1037 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.0052 4.9279 -0.5510 25 1 1.5684 1.6925 2.0247 26 1 2.0881 3.1437 1.1347 27 1 3.8887 0.7636 1.7687 28 1 4.5078 2.0408 -0.2645 29 1 4.4653 3.5535 0.6727 30 1 6.7847 2.7035 0.4613 31 1 6.2924 1.1710 1.2217 32 1 6.1171 3.9336 2.5077 33 1 7.3370 2.6913 2.8785 34 1 5.4983 2.6565 4.5413 35 1 5.5410 1.1440 3.6044 36 1 3.7143 3.5260 3.0554 37 1 3.2218 1.9938 3.8158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045061177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:57 Heat of formation + Delta-G solvation = -28.183586 kcal Electronic energy + Delta-G solvation = -15150.582034 eV Core-core repulsion = 12926.472888 eV Total energy + Delta-G solvation = -2224.109147 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.65267 -37.25769 -33.72400 -32.66351 -31.48240 -30.06213 -27.18198 -25.09183 -23.26039 -22.66272 -21.37854 -20.36048 -18.53808 -16.78702 -16.10607 -15.77390 -15.68858 -14.92821 -14.88855 -14.54810 -14.25613 -13.87984 -13.22601 -13.07741 -12.94108 -12.71825 -12.64878 -12.46274 -12.32773 -12.02920 -11.89855 -11.79283 -11.50160 -11.48395 -11.16190 -10.78785 -10.73385 -10.38078 -8.50475 -7.74938 -5.31022 1.44019 1.47384 1.52425 2.54048 3.30232 3.73185 3.94573 4.08419 4.11711 4.44608 4.47409 4.53613 4.72875 4.75866 4.77209 4.78817 4.86138 4.91162 4.92884 5.03684 5.17306 5.20781 5.28128 5.30901 5.34382 5.40328 5.50824 5.56038 5.61473 5.66748 5.75160 5.85435 6.01899 6.53015 7.24573 7.96674 8.47569 9.20608 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.023252 B = 0.013488 C = 0.009933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.926564 B = 2075.482892 C = 2818.328819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.137 3.863 3 N -0.600 5.600 4 C -0.246 4.246 5 H 0.052 0.948 6 C -0.030 4.030 7 N -0.917 5.917 8 Si 0.936 3.064 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.277 1.277 12 C 0.149 3.851 13 C -0.089 4.089 14 C -0.093 4.093 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.109 4.109 18 C -0.110 4.110 19 H 0.030 0.970 20 H 0.025 0.975 21 H 0.066 0.934 22 H 0.043 0.957 23 H 0.052 0.948 24 H 0.248 0.752 25 H 0.016 0.984 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.574 -4.350 6.481 10.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.011 3.989 3 N -0.321 5.321 4 C -0.376 4.376 5 H 0.069 0.931 6 C -0.227 4.227 7 N -0.562 5.562 8 Si 0.764 3.236 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.203 1.203 12 C 0.023 3.977 13 C -0.109 4.109 14 C -0.131 4.131 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.147 4.147 18 C -0.148 4.148 19 H 0.049 0.951 20 H 0.044 0.956 21 H 0.085 0.915 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.034 0.966 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.509 -4.206 6.475 10.770 hybrid contribution -0.127 0.903 -0.947 1.314 sum 7.381 -3.304 5.528 9.796 Atomic orbital electron populations 1.22144 0.99207 0.99955 0.99742 1.20995 0.92354 0.86475 0.99068 1.44091 1.75095 1.10752 1.02138 1.19048 1.35589 0.91614 0.91373 0.93079 1.25511 0.98113 0.99385 0.99665 1.70105 1.34564 1.10028 1.41504 0.85827 0.79512 0.77901 0.80311 1.20418 1.22239 1.20309 1.20940 0.92160 0.99504 0.85093 1.21528 0.96815 0.98345 0.94247 1.21310 0.94310 0.98333 0.99139 1.21569 0.95908 1.00777 0.97137 1.21519 0.99655 0.99416 0.94625 1.21469 0.93678 1.01006 0.98508 1.21501 0.97465 0.99845 0.95990 0.95105 0.95572 0.91529 0.93867 0.92993 0.94315 0.96606 0.91683 0.93017 0.93067 0.95851 0.92701 0.91874 0.93144 0.90459 0.90810 0.91620 0.93808 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.06 10.24 71.98 0.74 -5.33 16 2 C 0.14 5.75 6.39 86.38 0.55 6.30 16 3 N -0.60 -29.72 2.32 -701.99 -1.63 -31.35 16 4 C -0.25 -13.34 7.42 84.03 0.62 -12.71 16 5 H 0.05 2.80 7.93 -2.91 -0.02 2.78 16 6 C -0.03 -1.66 4.95 84.86 0.42 -1.24 16 7 N -0.92 -53.90 11.34 21.65 0.25 -53.66 16 8 Si 0.94 44.98 29.61 68.60 2.03 47.01 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 10 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.15 7.05 4.80 86.38 0.41 7.46 16 13 C -0.09 -3.47 2.40 -10.80 -0.03 -3.50 16 14 C -0.09 -3.79 4.76 30.59 0.15 -3.64 16 15 C -0.12 -3.66 5.92 30.59 0.18 -3.48 16 16 C -0.11 -3.06 5.92 30.60 0.18 -2.88 16 17 C -0.11 -2.83 5.92 30.58 0.18 -2.65 16 18 C -0.11 -3.58 5.20 30.58 0.16 -3.42 16 19 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 20 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 22 H 0.04 1.77 8.04 -2.39 -0.02 1.75 16 23 H 0.05 1.95 8.08 -2.39 -0.02 1.94 16 24 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.02 0.72 8.07 -2.39 -0.02 0.70 16 26 H 0.07 3.58 5.34 -2.39 -0.01 3.56 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 2.36 6.35 -2.39 -0.02 2.35 16 29 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -59.46 286.47 5.20 -54.26 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.99 Total: 8.83 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 3.57 Total: -25.09 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -1.39 Total: -85.01 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -59.46 5.20 -54.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.073 kcal (2) G-P(sol) polarization free energy of solvation -59.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds