Wall clock time and date at job start Sun Mar 29 2020 21:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86800 * 119.99528 * 2 1 4 4 H 1.48497 * 109.47350 * 274.97899 * 3 2 1 5 5 H 1.48497 * 109.47171 * 34.98493 * 3 2 1 6 6 H 1.48507 * 109.46667 * 154.98204 * 3 2 1 7 7 C 1.40042 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99936 * 186.19814 * 7 2 1 9 9 C 1.46372 * 120.00353 * 6.20001 * 7 2 1 10 10 O 1.21693 * 119.99649 * 354.30098 * 9 7 2 11 11 N 1.34774 * 120.00283 * 174.02723 * 9 7 2 12 12 C 1.46506 * 119.99894 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.46952 * 179.97438 * 12 11 9 14 14 N 1.29022 * 124.91661 * 89.68849 * 13 12 11 15 15 C 1.31789 * 117.12468 * 179.81083 * 14 13 12 16 16 C 1.33634 * 114.49431 * 0.47666 * 15 14 13 17 17 S 1.70978 * 124.91368 * 269.99539 * 13 12 11 18 18 H 0.97004 * 120.00166 * 0.02562 * 1 2 3 19 19 H 0.96998 * 120.00026 * 359.97438 * 11 9 7 20 20 H 1.09005 * 109.46418 * 299.99375 * 12 11 9 21 21 H 1.08991 * 109.47281 * 59.99550 * 12 11 9 22 22 H 1.07998 * 122.75041 * 180.22926 * 15 14 13 23 23 H 1.08007 * 126.03464 * 179.71488 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4946 2.6200 0.8027 6 1 3.5869 1.4121 0.5921 7 6 2.0069 -1.2128 0.0005 8 1 3.0822 -1.2154 0.1015 9 6 1.2816 -2.4768 -0.1358 10 8 0.0647 -2.4820 -0.1453 11 7 1.9614 -3.6343 -0.2564 12 6 1.2353 -4.8994 -0.3934 13 6 2.2205 -6.0337 -0.5110 14 7 2.7042 -6.6979 0.4837 15 6 3.5547 -7.6650 0.2038 16 6 3.8096 -7.8188 -1.0990 17 16 2.8645 -6.6220 -1.9816 18 1 -0.4850 0.8401 -0.0004 19 1 2.9314 -3.6297 -0.2532 20 1 0.6059 -5.0537 0.4831 21 1 0.6121 -4.8657 -1.2869 22 1 4.0113 -8.2800 0.9651 23 1 4.4775 -8.5476 -1.5340 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049534642.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:01 Heat of formation + Delta-G solvation = 5.186730 kcal Electronic energy + Delta-G solvation = -11302.348377 eV Core-core repulsion = 9049.513952 eV Total energy + Delta-G solvation = -2252.834425 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.54970 -37.26176 -33.65103 -32.35973 -30.29591 -27.50647 -25.73247 -23.39201 -19.95414 -19.67630 -18.16988 -17.04421 -15.52088 -15.33815 -14.75315 -14.18761 -14.08749 -13.62676 -12.98054 -12.61859 -12.08162 -11.47912 -11.39890 -11.17707 -10.93440 -10.48626 -10.23769 -9.51122 -9.36390 -8.92170 -8.86447 -7.65749 -7.61857 -6.21830 -4.66073 0.75046 1.44665 1.85070 2.90329 3.14115 3.21380 3.25264 4.09794 4.28997 4.55804 4.98188 5.15576 5.23649 5.49223 5.70835 6.01981 6.27455 6.29030 7.42439 7.81663 7.86585 7.98119 8.29465 9.00393 9.44875 10.55542 10.73414 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.063231 B = 0.006710 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.716706 B = 4171.772699 C = 4305.647717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.579 6.579 11 N -0.760 5.760 12 C 0.206 3.794 13 C 0.054 3.946 14 N -0.468 5.468 15 C 0.038 3.962 16 C -0.272 4.272 17 S 0.130 5.870 18 H 0.269 0.731 19 H 0.382 0.618 20 H 0.081 0.919 21 H 0.073 0.927 22 H 0.173 0.827 23 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.720 -11.347 -3.553 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.361 3.639 10 O -0.461 6.461 11 N -0.418 5.418 12 C 0.078 3.922 13 C -0.224 4.224 14 N -0.183 5.183 15 C -0.113 4.113 16 C -0.412 4.412 17 S 0.384 5.616 18 H 0.080 0.920 19 H 0.214 0.786 20 H 0.099 0.901 21 H 0.091 0.909 22 H 0.190 0.810 23 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.311 -10.836 -4.066 13.183 hybrid contribution 1.461 0.056 0.666 1.607 sum 7.772 -10.780 -3.400 13.717 Atomic orbital electron populations 1.70024 1.07090 1.27382 1.35007 1.25711 0.94632 1.00340 0.92582 0.86326 0.80226 0.81333 0.78685 1.19767 1.20407 1.18872 1.20845 0.94170 0.89272 1.53668 0.91276 1.18261 0.87154 0.82027 0.76434 1.90610 1.13985 1.86118 1.55414 1.46215 1.08751 1.04510 1.82291 1.19445 0.90202 0.79899 1.02691 1.27525 1.02250 1.01776 0.90894 1.66347 1.11077 1.07069 1.33847 1.21844 0.97434 0.96965 0.95100 1.27095 1.09458 1.07011 0.97630 1.84115 1.37300 1.26961 1.13258 0.92026 0.78606 0.90080 0.90921 0.80968 0.80819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.93 11.85 55.55 0.66 -22.27 14 2 C 0.09 2.44 5.49 -17.37 -0.10 2.34 14 3 Si 0.91 20.11 29.56 -169.99 -5.03 15.08 14 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 14 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 14 6 H -0.26 -5.67 7.11 56.52 0.40 -5.27 14 7 C -0.54 -15.37 9.53 -35.63 -0.34 -15.71 14 8 H 0.07 1.80 7.86 -52.48 -0.41 1.39 14 9 C 0.56 15.90 7.74 -12.99 -0.10 15.80 14 10 O -0.58 -18.69 15.04 5.19 0.08 -18.61 14 11 N -0.76 -17.40 5.54 -62.90 -0.35 -17.74 14 12 C 0.21 4.09 6.25 -5.19 -0.03 4.06 14 13 C 0.05 0.89 6.76 -13.46 -0.09 0.80 14 14 N -0.47 -7.79 10.54 -11.86 -0.13 -7.91 14 15 C 0.04 0.49 11.35 -19.18 -0.22 0.28 14 16 C -0.27 -3.06 11.36 29.12 0.33 -2.73 14 17 S 0.13 1.71 23.18 -107.50 -2.49 -0.78 14 18 H 0.27 7.27 8.29 -40.82 -0.34 6.93 14 19 H 0.38 7.96 8.44 -40.82 -0.34 7.62 14 20 H 0.08 1.72 8.14 -51.93 -0.42 1.30 14 21 H 0.07 1.42 8.14 -51.93 -0.42 1.00 14 22 H 0.17 1.70 8.06 -52.49 -0.42 1.27 14 23 H 0.17 1.36 8.06 -52.48 -0.42 0.94 14 LS Contribution 232.53 15.07 3.50 3.50 Total: -1.00 -33.92 232.53 -5.88 -39.80 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -1.58 Total: 4.09 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.55 Total: 4.84 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.18 Total: -47.93 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.08 Total: -18.61 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.49 Total: -0.78 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -33.92 -5.88 -39.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049534642.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.986 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds