Wall clock time and date at job start Sun Mar 29 2020 21:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00136 * 2 1 4 4 C 1.53002 * 109.47115 * 293.95832 * 3 2 1 5 5 C 1.53004 * 109.46982 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46891 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00219 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99974 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99931 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00098 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47109 * 90.00092 * 10 8 6 12 12 H 1.48505 * 109.47330 * 209.99973 * 10 8 6 13 13 H 1.48493 * 109.47296 * 330.00328 * 10 8 6 14 14 C 1.46898 * 111.00447 * 123.95704 * 2 1 3 15 15 C 1.54967 * 110.92004 * 60.83686 * 14 2 1 16 16 C 1.54269 * 104.15760 * 156.29909 * 15 14 2 17 17 C 1.53876 * 106.64159 * 336.44567 * 16 15 14 18 18 C 1.54268 * 106.59599 * 359.97438 * 17 16 15 19 19 H 1.08998 * 109.46551 * 301.74218 * 1 2 3 20 20 H 1.08998 * 109.47435 * 61.74235 * 1 2 3 21 21 H 1.09004 * 109.46443 * 181.74339 * 1 2 3 22 22 H 1.09002 * 109.46771 * 53.95147 * 3 2 1 23 23 H 1.08993 * 109.47811 * 173.95573 * 3 2 1 24 24 H 1.08994 * 109.47434 * 299.99769 * 4 3 2 25 25 H 1.09008 * 109.47250 * 59.99602 * 4 3 2 26 26 H 1.08989 * 109.47318 * 299.99973 * 5 4 3 27 27 H 1.09001 * 109.46858 * 60.00487 * 5 4 3 28 28 H 0.97003 * 120.00249 * 179.97438 * 9 8 6 29 29 H 1.09003 * 110.66754 * 297.53450 * 14 2 1 30 30 H 1.08993 * 110.48155 * 37.64439 * 15 14 2 31 31 H 1.09006 * 110.53057 * 274.97153 * 15 14 2 32 32 H 1.08997 * 110.03061 * 217.13103 * 16 15 14 33 33 H 1.09005 * 110.03344 * 95.75400 * 16 15 14 34 34 H 1.08993 * 110.03307 * 119.25797 * 17 16 15 35 35 H 1.09002 * 110.03052 * 240.64422 * 17 16 15 36 36 H 1.08997 * 110.48526 * 142.29180 * 18 17 16 37 37 H 1.09001 * 110.48571 * 264.93178 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1793 3.4861 -1.3179 6 6 1.8212 4.1616 -2.6166 7 1 1.2595 3.6255 -3.3673 8 6 2.2116 5.4637 -2.8469 9 7 2.8969 6.1161 -1.9335 10 14 1.7684 6.3008 -4.4569 11 1 0.4560 6.9813 -4.3162 12 1 2.8110 7.3020 -4.7978 13 1 1.6858 5.2849 -5.5368 14 6 1.9956 -0.7660 1.1375 15 6 1.5354 -2.2442 1.0696 16 6 2.5946 -3.0072 1.8917 17 6 3.8671 -2.1422 1.8821 18 6 3.5377 -0.8831 1.0537 19 1 -0.3632 0.5407 0.8740 20 1 -0.3634 0.4865 -0.9052 21 1 -0.3632 -1.0273 0.0313 22 1 1.5611 1.9273 0.8309 23 1 3.0797 1.3445 0.1082 24 1 2.0657 1.5017 -2.1492 25 1 0.5471 2.0845 -1.4265 26 1 1.7447 4.0417 -0.4871 27 1 3.2635 3.4594 -1.2096 28 1 3.1719 7.0321 -2.0956 29 1 1.6933 -0.3109 2.0807 30 1 1.5285 -2.5945 0.0375 31 1 0.5489 -2.3585 1.5189 32 1 2.7974 -3.9749 1.4329 33 1 2.2448 -3.1454 2.9148 34 1 4.1344 -1.8598 2.9003 35 1 4.6878 -2.6904 1.4192 36 1 4.0114 -0.0042 1.4909 37 1 3.8548 -1.0135 0.0190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:03 Heat of formation + Delta-G solvation = -45.020808 kcal Electronic energy + Delta-G solvation = -14115.835773 eV Core-core repulsion = 11890.996510 eV Total energy + Delta-G solvation = -2224.839263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.96170 -37.06754 -35.36770 -33.10768 -29.99186 -29.00463 -28.26021 -26.08840 -23.83315 -21.72911 -20.86953 -20.75902 -18.46993 -17.23875 -16.64878 -16.44163 -16.08416 -15.51134 -14.93141 -14.36321 -14.26935 -14.13496 -13.63019 -13.35898 -12.93085 -12.68621 -12.63314 -12.51659 -12.29981 -11.93910 -11.80310 -11.77188 -11.68366 -11.39773 -11.29190 -11.21471 -11.02731 -10.55413 -9.26318 -8.20330 -6.31641 1.39822 1.41584 1.53026 2.40980 2.98107 3.12658 3.62690 3.81534 4.02001 4.17293 4.28375 4.46125 4.47772 4.58355 4.60862 4.69289 4.71986 4.78803 4.82566 4.94083 4.98402 5.04142 5.10420 5.12250 5.21671 5.26048 5.30993 5.36533 5.51825 5.52243 5.73332 5.85028 6.11194 6.25083 6.30024 6.84890 7.37642 8.91776 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.062350 B = 0.005278 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.969350 B = 5303.838798 C = 5545.909962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.542 5.542 3 C 0.067 3.933 4 C -0.089 4.089 5 C 0.026 3.974 6 C -0.543 4.543 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.967 3.033 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.070 3.930 15 C -0.110 4.110 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.121 4.121 19 H 0.020 0.980 20 H 0.062 0.938 21 H 0.086 0.914 22 H 0.019 0.981 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.050 0.950 26 H -0.011 1.011 27 H -0.009 1.009 28 H 0.264 0.736 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.022 -16.992 7.192 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.266 5.266 3 C -0.061 4.061 4 C -0.126 4.126 5 C -0.012 4.012 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.791 3.209 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.188 1.188 14 C -0.038 4.038 15 C -0.148 4.148 16 C -0.156 4.156 17 C -0.157 4.157 18 C -0.159 4.159 19 H 0.039 0.961 20 H 0.081 0.919 21 H 0.105 0.895 22 H 0.037 0.963 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.007 0.993 27 H 0.009 0.991 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.787 -17.075 6.804 18.467 hybrid contribution -0.283 1.452 0.083 1.482 sum -2.070 -15.623 6.886 17.198 Atomic orbital electron populations 1.22438 0.87044 1.02486 1.00540 1.62119 1.08430 1.13127 1.42932 1.22032 0.99620 0.87794 0.96651 1.21389 0.99750 0.95252 0.96256 1.18972 0.94621 0.92180 0.95405 1.21682 1.35054 0.98377 1.02981 0.92298 1.26000 0.94861 0.98249 1.00739 1.70101 1.39287 1.11762 1.36317 0.85423 0.78068 0.78212 0.79203 1.19673 1.20598 1.18752 1.22780 0.95512 0.94746 0.90792 1.22380 0.98933 0.92458 1.01001 1.22086 0.94347 0.98737 1.00447 1.22082 0.98399 0.95233 0.99998 1.22411 0.94374 0.98346 1.00721 0.96101 0.91902 0.89548 0.96286 0.91488 0.93066 0.93158 0.99299 0.99068 0.92744 0.94298 0.91165 0.91047 0.90609 0.90936 0.91321 0.90957 0.92789 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.13 127.69 1.17 1.79 16 2 N -0.54 -16.77 4.66 -889.31 -4.14 -20.91 16 3 C 0.07 2.49 4.83 86.30 0.42 2.91 16 4 C -0.09 -3.89 5.08 30.60 0.16 -3.74 16 5 C 0.03 1.42 4.97 29.85 0.15 1.57 16 6 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 7 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 8 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 9 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 10 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 14 C 0.07 1.79 2.58 46.23 0.12 1.91 16 15 C -0.11 -2.19 5.23 31.70 0.17 -2.03 16 16 C -0.12 -1.93 6.80 31.32 0.21 -1.72 16 17 C -0.12 -2.19 6.80 31.32 0.21 -1.98 16 18 C -0.12 -2.98 5.27 31.67 0.17 -2.81 16 19 H 0.02 0.56 8.13 -2.39 -0.02 0.54 16 20 H 0.06 1.85 6.55 -2.39 -0.02 1.84 16 21 H 0.09 1.92 6.80 -2.39 -0.02 1.91 16 22 H 0.02 0.73 8.11 -2.39 -0.02 0.71 16 23 H 0.07 2.52 6.64 -2.39 -0.02 2.50 16 24 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.05 2.15 6.59 -2.38 -0.02 2.14 16 26 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.26 7.84 -2.38 -0.02 1.24 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.40 7.72 -2.39 -0.02 1.39 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -64.47 289.91 2.62 -61.85 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 0.99 Total: 5.19 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 3.46 Total: -35.46 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -3.86 Total: -78.75 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -64.47 2.62 -61.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.831 kcal (2) G-P(sol) polarization free energy of solvation -64.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds