Wall clock time and date at job start Sun Mar 29 2020 21:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47431 * 2 1 4 4 N 1.46893 * 109.47118 * 185.24205 * 3 2 1 5 5 C 1.46900 * 111.00432 * 285.19214 * 4 3 2 6 6 C 1.52998 * 109.47301 * 170.00218 * 5 4 3 7 7 C 1.53001 * 109.46896 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47063 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99593 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99646 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00681 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99461 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47040 * 90.00069 * 12 10 8 14 14 H 1.48497 * 109.46956 * 209.99500 * 12 10 8 15 15 H 1.48495 * 109.47318 * 330.00181 * 12 10 8 16 16 C 1.46899 * 110.99944 * 161.23980 * 4 3 2 17 17 C 1.53005 * 117.49741 * 10.70852 * 16 4 3 18 18 C 1.53003 * 60.00213 * 252.50970 * 17 16 4 19 19 H 1.08999 * 109.47157 * 59.99612 * 1 2 3 20 20 H 1.08994 * 109.46955 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47081 * 300.00025 * 1 2 3 22 22 H 1.09003 * 109.47081 * 239.99975 * 2 1 3 23 23 H 1.08999 * 109.47157 * 120.00388 * 2 1 3 24 24 H 1.09002 * 109.46689 * 65.24208 * 3 2 1 25 25 H 1.09001 * 109.47208 * 305.24867 * 3 2 1 26 26 H 1.09006 * 109.46920 * 49.99876 * 5 4 3 27 27 H 1.09002 * 109.47126 * 290.00444 * 5 4 3 28 28 H 1.08996 * 109.46848 * 299.99575 * 6 5 4 29 29 H 1.08996 * 109.47119 * 60.00422 * 6 5 4 30 30 H 1.09002 * 109.47282 * 300.00074 * 7 6 5 31 31 H 1.09006 * 109.47169 * 59.99753 * 7 6 5 32 32 H 0.97000 * 120.00062 * 180.02562 * 11 10 8 33 33 H 1.09000 * 115.55704 * 156.41629 * 16 4 3 34 34 H 1.08998 * 117.49640 * 0.02562 * 17 16 4 35 35 H 1.09003 * 117.50041 * 145.01992 * 17 16 4 36 36 H 1.08991 * 117.49896 * 252.51587 * 18 17 16 37 37 H 1.08999 * 117.51507 * 107.47521 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5036 1.4443 -0.1265 5 6 4.1417 1.0455 1.1351 6 6 5.6363 0.8174 0.9009 7 6 6.3007 0.4014 2.2149 8 6 7.7728 0.1761 1.9841 9 1 8.1924 0.3154 0.9987 10 6 8.5837 -0.2087 3.0307 11 7 8.0726 -0.3787 4.2305 12 14 10.4083 -0.4886 2.7445 13 1 11.1448 0.7816 2.9669 14 1 10.9050 -1.5207 3.6896 15 1 10.6257 -0.9489 1.3495 16 6 3.9918 2.7564 -0.5715 17 6 2.9943 3.9166 -0.5773 18 6 3.4549 3.2972 -1.8984 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.7554 1.9284 0.9332 25 1 1.6021 1.9828 -0.8392 26 1 3.6858 0.1239 1.4973 27 1 4.0060 1.8335 1.8759 28 1 5.7719 0.0294 0.1602 29 1 6.0921 1.7389 0.5388 30 1 6.1651 1.1891 2.9560 31 1 5.8448 -0.5203 2.5767 32 1 8.6432 -0.6491 4.9669 33 1 5.0271 2.9837 -0.3175 34 1 1.9760 3.7063 -0.2505 35 1 3.3733 4.9074 -0.3269 36 1 4.1370 3.8804 -2.5169 37 1 2.7398 2.6791 -2.4411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579372.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:26 Heat of formation + Delta-G solvation = -10.306333 kcal Electronic energy + Delta-G solvation = -14065.167142 eV Core-core repulsion = 11841.833211 eV Total energy + Delta-G solvation = -2223.333931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.15228 -36.36294 -35.54310 -34.21783 -32.09321 -28.54266 -26.42182 -24.64429 -23.37133 -22.61244 -22.05465 -20.38293 -18.51012 -17.32239 -16.82479 -16.44261 -15.96161 -15.70482 -14.71711 -14.56144 -14.11584 -13.93817 -13.71085 -13.26801 -13.00216 -12.72187 -12.56599 -12.46280 -12.40708 -12.10494 -12.05934 -11.72596 -11.52176 -11.40363 -11.27084 -11.18964 -11.00077 -10.55091 -9.05662 -8.20311 -6.31497 1.39761 1.41416 1.52879 2.40826 2.72240 3.12432 3.12753 3.85673 3.94861 4.01894 4.11232 4.17751 4.30132 4.44867 4.51083 4.59496 4.70639 4.72536 4.76024 4.84557 4.94756 4.99481 5.08155 5.11830 5.22219 5.24345 5.26601 5.30682 5.43299 5.51832 5.73990 5.85282 6.13232 6.21404 6.28171 6.85054 7.37778 8.91763 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036532 B = 0.006021 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.277421 B = 4648.975026 C = 5151.349944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.051 3.949 4 N -0.514 5.514 5 C 0.070 3.930 6 C -0.087 4.087 7 C 0.026 3.974 8 C -0.543 4.543 9 H 0.058 0.942 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.966 3.034 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.264 1.264 16 C -0.005 4.005 17 C -0.212 4.212 18 C -0.158 4.158 19 H 0.064 0.936 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.023 0.977 28 H 0.050 0.950 29 H 0.049 0.951 30 H -0.011 1.011 31 H -0.008 1.008 32 H 0.264 0.736 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 5.513 -10.231 17.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.076 4.076 4 N -0.236 5.236 5 C -0.058 4.058 6 C -0.125 4.125 7 C -0.012 4.012 8 C -0.581 4.581 9 H 0.076 0.924 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.790 3.210 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.188 1.188 16 C -0.114 4.114 17 C -0.251 4.251 18 C -0.196 4.196 19 H 0.083 0.917 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.051 0.949 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.008 0.992 31 H 0.010 0.990 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.927 5.095 -10.412 17.363 hybrid contribution 0.854 0.314 1.024 1.370 sum -12.073 5.409 -9.388 16.222 Atomic orbital electron populations 1.21691 0.93877 1.02358 1.02217 1.21525 0.96667 0.95838 1.01888 1.22330 0.86719 0.97853 1.00701 1.61908 1.06202 1.25688 1.29753 1.22019 0.95036 0.99266 0.89465 1.21384 0.93263 1.00068 0.97787 1.18972 0.94632 0.94496 0.93059 1.21680 0.94883 1.45988 0.95526 0.92354 1.25989 1.04010 0.95012 0.94798 1.70098 1.37562 1.48466 1.01323 0.85436 0.79004 0.78158 0.78391 1.19672 1.20592 1.18790 1.22779 0.98092 0.87756 1.02817 1.23599 1.00515 0.98434 1.02564 1.23098 1.03601 1.02549 0.90340 0.91705 0.91926 0.92624 0.91762 0.93399 0.94922 0.89307 0.91301 0.95882 0.93169 0.93251 0.99218 0.99008 0.92739 0.87533 0.87897 0.88231 0.87410 0.88180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.91 71.98 0.71 -1.81 16 2 C -0.12 -2.84 5.95 30.60 0.18 -2.66 16 3 C 0.05 1.26 3.62 86.30 0.31 1.58 16 4 N -0.51 -15.75 4.66 -870.97 -4.06 -19.81 16 5 C 0.07 2.56 4.79 86.30 0.41 2.97 16 6 C -0.09 -3.81 5.15 30.59 0.16 -3.65 16 7 C 0.03 1.43 4.97 29.85 0.15 1.58 16 8 C -0.54 -31.92 9.11 25.60 0.23 -31.68 16 9 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 10 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 11 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 12 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 16 C -0.01 -0.15 5.83 44.92 0.26 0.12 16 17 C -0.21 -4.67 9.56 30.60 0.29 -4.38 16 18 C -0.16 -3.42 9.91 30.60 0.30 -3.12 16 19 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 21 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.26 6.92 -2.39 -0.02 1.25 16 24 H 0.03 0.82 7.82 -2.39 -0.02 0.80 16 25 H 0.09 1.89 5.60 -2.39 -0.01 1.88 16 26 H 0.07 2.55 6.66 -2.38 -0.02 2.53 16 27 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 28 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 2.11 6.40 -2.39 -0.02 2.10 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 32 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.11 3.34 6.34 -2.39 -0.02 3.33 16 34 H 0.10 2.11 6.03 -2.39 -0.01 2.09 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.10 2.04 7.46 -2.39 -0.02 2.02 16 Total: -1.00 -64.16 293.74 2.74 -61.42 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.01 Total: 9.58 kcal Atomic # 6 Polarization: -44.11 SS G_CDS: 3.48 Total: -40.63 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -3.77 Total: -77.50 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -64.16 2.74 -61.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579372.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -64.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds