Wall clock time and date at job start Sun Mar 29 2020 21:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52995 * 117.50095 * 128.62334 * 4 2 1 6 6 C 1.52996 * 117.49906 * 59.99887 * 4 2 1 7 7 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 8 8 C 1.46903 * 111.00408 * 176.04515 * 7 2 1 9 9 C 1.46897 * 111.00175 * 300.00375 * 7 2 1 10 10 C 1.53005 * 109.47498 * 169.99794 * 9 7 2 11 11 C 1.53000 * 109.47165 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00205 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00121 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99545 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47006 * 90.00511 * 16 14 12 18 18 H 1.48503 * 109.46868 * 210.00186 * 16 14 12 19 19 H 1.48495 * 109.47061 * 330.00187 * 16 14 12 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 1.08998 * 115.54608 * 274.32570 * 4 2 1 24 24 H 1.09000 * 117.49885 * 359.97438 * 5 4 2 25 25 H 1.08994 * 117.50251 * 145.02269 * 5 4 2 26 26 H 1.09000 * 117.49556 * 214.98390 * 6 4 2 27 27 H 1.08998 * 117.49880 * 359.97438 * 6 4 2 28 28 H 1.08995 * 109.46799 * 60.00117 * 8 7 2 29 29 H 1.08994 * 109.47282 * 180.02562 * 8 7 2 30 30 H 1.08999 * 109.46910 * 300.00279 * 8 7 2 31 31 H 1.09004 * 109.47033 * 289.99910 * 9 7 2 32 32 H 1.08999 * 109.47167 * 49.99404 * 9 7 2 33 33 H 1.08997 * 109.46462 * 299.99915 * 10 9 7 34 34 H 1.08999 * 109.47230 * 59.99648 * 10 9 7 35 35 H 1.09001 * 109.46708 * 300.00001 * 11 10 9 36 36 H 1.08999 * 109.47334 * 59.99711 * 11 10 9 37 37 H 0.97002 * 119.99465 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.0741 0.0052 -2.1117 6 6 1.6357 -0.1493 -2.6096 7 7 2.0197 -0.6925 1.1993 8 6 3.4851 -0.7945 1.1869 9 6 1.5487 -0.0265 2.4210 10 6 1.8628 -0.9045 3.6341 11 6 1.3716 -0.2111 4.9064 12 6 1.6804 -1.0761 6.1011 13 1 2.1776 -2.0253 5.9664 14 6 1.3291 -0.6553 7.3662 15 7 0.7240 0.5008 7.5302 16 14 1.7125 -1.7273 8.8472 17 1 3.0565 -1.3801 9.3748 18 1 0.6923 -1.4978 9.9017 19 1 1.6933 -3.1559 8.4424 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 2.1267 -1.8044 -1.1643 24 1 3.3909 0.9971 -1.7893 25 1 3.8415 -0.6000 -2.5943 26 1 1.4568 -0.8564 -3.4197 27 1 1.0060 0.7403 -2.6145 28 1 3.9187 0.2051 1.1591 29 1 3.8210 -1.3117 2.0857 30 1 3.8030 -1.3531 0.3066 31 1 2.0519 0.9345 2.5280 32 1 0.4723 0.1323 2.3563 33 1 1.3596 -1.8654 3.5270 34 1 2.9392 -1.0633 3.6988 35 1 1.8744 0.7501 5.0135 36 1 0.2951 -0.0527 4.8415 37 1 0.4765 0.7967 8.4203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049579397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:02 Heat of formation + Delta-G solvation = 10.106657 kcal Electronic energy + Delta-G solvation = -14059.393412 eV Core-core repulsion = 11836.944655 eV Total energy + Delta-G solvation = -2222.448757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.91150 -36.18430 -33.54033 -31.47755 -30.26036 -27.06104 -24.83076 -23.92698 -22.39818 -21.61347 -19.76418 -19.58559 -16.37289 -16.17301 -15.06553 -14.72414 -14.59764 -14.23033 -13.71953 -13.22925 -12.81502 -12.22054 -12.12129 -11.82327 -11.59787 -11.54972 -11.31321 -11.20044 -10.87282 -10.61217 -10.55818 -10.42720 -10.30768 -9.91826 -9.51723 -9.26658 -9.00414 -8.30119 -7.97667 -5.95690 -3.97428 3.34907 3.40854 3.44927 3.69916 4.14638 4.50516 4.66822 4.84672 4.96172 5.30003 5.36952 5.40083 5.49663 5.51489 5.53719 5.73229 5.76595 5.84260 5.92392 5.99751 6.04055 6.10902 6.19574 6.22298 6.34193 6.48103 6.77261 6.87350 7.19191 7.46329 7.50308 7.73627 7.89176 8.05329 8.49037 9.09875 9.66301 11.15841 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.071033 B = 0.005110 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.089101 B = 5478.656968 C = 5674.500218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.110 3.890 3 H 0.035 0.965 4 C -0.137 4.137 5 C -0.185 4.185 6 C -0.178 4.178 7 N -0.536 5.536 8 C 0.025 3.975 9 C 0.051 3.949 10 C -0.104 4.104 11 C 0.021 3.979 12 C -0.517 4.517 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.110 0.890 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.018 0.982 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.405 -0.545 -17.439 17.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 H 0.053 0.947 4 C -0.156 4.156 5 C -0.222 4.222 6 C -0.216 4.216 7 N -0.261 5.261 8 C -0.123 4.123 9 C -0.076 4.076 10 C -0.142 4.142 11 C -0.016 4.016 12 C -0.555 4.555 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.129 0.871 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.134 -0.904 -17.305 17.459 hybrid contribution 0.577 0.362 0.890 1.121 sum 2.711 -0.542 -16.415 16.646 Atomic orbital electron populations 1.21870 0.94203 1.02747 1.01422 1.21154 0.95477 0.94345 0.88855 0.94737 1.22303 1.02704 0.99796 0.90749 1.23029 0.92526 1.02004 1.04657 1.22922 0.97943 1.03260 0.97448 1.62093 1.10140 1.52145 1.01699 1.22375 0.87731 0.99684 1.02504 1.22386 1.00236 0.95710 0.89228 1.21649 1.00128 0.98685 0.93751 1.19075 0.96389 0.95614 0.90538 1.21262 1.38016 1.04710 0.91549 0.92695 1.25031 0.95294 0.95151 0.99054 1.69975 1.41145 1.20141 1.22425 0.86601 0.77969 0.80930 0.82551 1.20731 1.21257 1.19850 0.92038 0.91663 0.92651 0.87146 0.89155 0.89036 0.88941 0.88940 0.96323 0.90860 0.91860 0.95593 0.90791 0.92645 0.93488 0.96900 0.96634 0.93087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.83 37.16 0.33 -1.49 16 2 C 0.11 1.46 2.30 -67.71 -0.16 1.31 16 3 H 0.03 0.48 7.90 -51.93 -0.41 0.07 16 4 C -0.14 -1.54 3.77 -90.62 -0.34 -1.89 16 5 C -0.19 -1.81 10.16 -26.73 -0.27 -2.08 16 6 C -0.18 -1.67 9.73 -26.73 -0.26 -1.93 16 7 N -0.54 -8.43 4.63 -234.89 -1.09 -9.52 16 8 C 0.03 0.37 9.06 60.07 0.54 0.91 16 9 C 0.05 0.93 4.77 -3.82 -0.02 0.92 16 10 C -0.10 -2.24 5.08 -26.73 -0.14 -2.38 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 13 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 15 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H 0.06 0.83 6.20 -51.93 -0.32 0.50 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.05 0.59 7.29 -51.93 -0.38 0.21 16 23 H 0.11 1.31 8.07 -51.93 -0.42 0.89 16 24 H 0.09 0.90 8.05 -51.93 -0.42 0.48 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.84 7.61 -51.93 -0.39 0.44 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 1.13 6.30 -51.93 -0.33 0.80 16 30 H 0.06 0.80 6.91 -51.93 -0.36 0.44 16 31 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 1.34 5.83 -51.93 -0.30 1.03 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -30.05 293.81 -8.39 -38.45 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.59 Total: -3.66 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -0.86 Total: -20.00 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.35 Total: -36.22 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.05 -8.39 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.555 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds