Wall clock time and date at job start Sun Mar 29 2020 21:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52995 * 117.50095 * 128.62334 * 4 2 1 6 6 C 1.52996 * 117.49906 * 59.99887 * 4 2 1 7 7 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 8 8 C 1.46903 * 111.00408 * 176.04515 * 7 2 1 9 9 C 1.46897 * 111.00175 * 300.00375 * 7 2 1 10 10 C 1.53005 * 109.47498 * 169.99794 * 9 7 2 11 11 C 1.53000 * 109.47165 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00205 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00121 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99545 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.47006 * 90.00511 * 16 14 12 18 18 H 1.48503 * 109.46868 * 210.00186 * 16 14 12 19 19 H 1.48495 * 109.47061 * 330.00187 * 16 14 12 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 1.08998 * 115.54608 * 274.32570 * 4 2 1 24 24 H 1.09000 * 117.49885 * 359.97438 * 5 4 2 25 25 H 1.08994 * 117.50251 * 145.02269 * 5 4 2 26 26 H 1.09000 * 117.49556 * 214.98390 * 6 4 2 27 27 H 1.08998 * 117.49880 * 359.97438 * 6 4 2 28 28 H 1.08995 * 109.46799 * 60.00117 * 8 7 2 29 29 H 1.08994 * 109.47282 * 180.02562 * 8 7 2 30 30 H 1.08999 * 109.46910 * 300.00279 * 8 7 2 31 31 H 1.09004 * 109.47033 * 289.99910 * 9 7 2 32 32 H 1.08999 * 109.47167 * 49.99404 * 9 7 2 33 33 H 1.08997 * 109.46462 * 299.99915 * 10 9 7 34 34 H 1.08999 * 109.47230 * 59.99648 * 10 9 7 35 35 H 1.09001 * 109.46708 * 300.00001 * 11 10 9 36 36 H 1.08999 * 109.47334 * 59.99711 * 11 10 9 37 37 H 0.97002 * 119.99465 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.0741 0.0052 -2.1117 6 6 1.6357 -0.1493 -2.6096 7 7 2.0197 -0.6925 1.1993 8 6 3.4851 -0.7945 1.1869 9 6 1.5487 -0.0265 2.4210 10 6 1.8628 -0.9045 3.6341 11 6 1.3716 -0.2111 4.9064 12 6 1.6804 -1.0761 6.1011 13 1 2.1776 -2.0253 5.9664 14 6 1.3291 -0.6553 7.3662 15 7 0.7240 0.5008 7.5302 16 14 1.7125 -1.7273 8.8472 17 1 3.0565 -1.3801 9.3748 18 1 0.6923 -1.4978 9.9017 19 1 1.6933 -3.1559 8.4424 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 2.1267 -1.8044 -1.1643 24 1 3.3909 0.9971 -1.7893 25 1 3.8415 -0.6000 -2.5943 26 1 1.4568 -0.8564 -3.4197 27 1 1.0060 0.7403 -2.6145 28 1 3.9187 0.2051 1.1591 29 1 3.8210 -1.3117 2.0857 30 1 3.8030 -1.3531 0.3066 31 1 2.0519 0.9345 2.5280 32 1 0.4723 0.1323 2.3563 33 1 1.3596 -1.8654 3.5270 34 1 2.9392 -1.0633 3.6988 35 1 1.8744 0.7501 5.0135 36 1 0.2951 -0.0527 4.8415 37 1 0.4765 0.7967 8.4203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049579397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:01 Heat of formation + Delta-G solvation = -7.436366 kcal Electronic energy + Delta-G solvation = -14060.154134 eV Core-core repulsion = 11836.944655 eV Total energy + Delta-G solvation = -2223.209480 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.98508 -37.36151 -35.51165 -33.29929 -31.47055 -28.84769 -26.28616 -25.28951 -23.23125 -23.12697 -21.45073 -20.59528 -18.46525 -17.38652 -16.54175 -16.19485 -15.99682 -15.54888 -15.02300 -14.54513 -14.25131 -13.87964 -13.62737 -13.23714 -12.99682 -12.75836 -12.68302 -12.46700 -12.43459 -12.20569 -12.16163 -11.78044 -11.46294 -11.28890 -11.24707 -10.95660 -10.78099 -10.54676 -9.24833 -8.19937 -6.31059 1.40114 1.41809 1.53269 2.41277 2.81945 3.05851 3.13088 3.75908 4.02765 4.09115 4.19498 4.28799 4.31147 4.39207 4.53323 4.61819 4.72306 4.75307 4.79578 4.87488 4.94102 4.99953 5.05552 5.07856 5.16868 5.24410 5.28612 5.33581 5.39897 5.52850 5.74230 5.85814 6.12786 6.24480 6.29780 6.85519 7.38145 8.92138 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.071033 B = 0.005110 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 394.089101 B = 5478.656968 C = 5674.500218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.110 3.890 3 H 0.030 0.970 4 C -0.151 4.151 5 C -0.180 4.180 6 C -0.165 4.165 7 N -0.542 5.542 8 C 0.027 3.973 9 C 0.063 3.937 10 C -0.089 4.089 11 C 0.026 3.974 12 C -0.543 4.543 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.263 1.263 20 H 0.046 0.954 21 H 0.060 0.940 22 H 0.077 0.923 23 H 0.106 0.894 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.049 0.951 35 H -0.011 1.011 36 H -0.008 1.008 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 -1.437 -18.462 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.002 3.998 3 H 0.048 0.952 4 C -0.169 4.169 5 C -0.217 4.217 6 C -0.202 4.202 7 N -0.267 5.267 8 C -0.121 4.121 9 C -0.065 4.065 10 C -0.127 4.127 11 C -0.012 4.012 12 C -0.581 4.581 13 H 0.077 0.923 14 C -0.198 4.198 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.188 1.188 20 H 0.065 0.935 21 H 0.079 0.921 22 H 0.095 0.905 23 H 0.124 0.876 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.007 0.993 36 H 0.010 0.990 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.718 -1.800 -18.350 18.638 hybrid contribution 0.387 0.674 1.162 1.398 sum 3.105 -1.127 -17.189 17.503 Atomic orbital electron populations 1.21864 0.93840 1.02539 1.01797 1.21222 0.95830 0.94155 0.88625 0.95177 1.22149 1.04764 0.99363 0.90641 1.23090 0.93047 1.01763 1.03831 1.23015 0.97597 1.03351 0.96265 1.62056 1.11009 1.52132 1.01471 1.22389 0.86910 0.99929 1.02894 1.22105 1.00250 0.94692 0.89422 1.21395 0.99894 0.98392 0.92977 1.18972 0.94678 0.94784 0.92747 1.21684 1.38378 1.05228 0.92783 0.92317 1.25999 0.94822 0.96550 1.02474 1.70107 1.41957 1.21932 1.23458 0.85428 0.78083 0.79198 0.78228 1.19706 1.20605 1.18756 0.93493 0.92108 0.90452 0.87619 0.89408 0.87790 0.87462 0.88488 0.96189 0.92084 0.89746 0.96309 0.90890 0.93022 0.93197 0.99301 0.98971 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.83 71.98 0.64 -2.81 16 2 C 0.11 2.78 2.30 44.92 0.10 2.89 16 3 H 0.03 0.80 7.90 -2.39 -0.02 0.78 16 4 C -0.15 -3.08 3.77 -10.79 -0.04 -3.12 16 5 C -0.18 -3.06 10.16 30.59 0.31 -2.75 16 6 C -0.16 -2.62 9.73 30.59 0.30 -2.32 16 7 N -0.54 -16.69 4.63 -897.06 -4.15 -20.85 16 8 C 0.03 0.75 9.06 127.69 1.16 1.90 16 9 C 0.06 2.32 4.77 86.31 0.41 2.73 16 10 C -0.09 -3.88 5.08 30.60 0.16 -3.73 16 11 C 0.03 1.42 4.97 29.85 0.15 1.56 16 12 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 15 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 16 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 20 H 0.05 1.25 6.20 -2.39 -0.01 1.24 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.08 1.49 7.29 -2.38 -0.02 1.48 16 23 H 0.11 2.29 8.07 -2.39 -0.02 2.27 16 24 H 0.09 1.55 8.05 -2.39 -0.02 1.53 16 25 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.10 1.47 7.61 -2.39 -0.02 1.45 16 28 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 1.84 6.30 -2.39 -0.02 1.82 16 30 H 0.08 1.99 6.91 -2.39 -0.02 1.97 16 31 H 0.02 0.71 8.12 -2.38 -0.02 0.69 16 32 H 0.07 2.69 5.83 -2.39 -0.01 2.68 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.05 2.13 6.47 -2.39 -0.02 2.12 16 35 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -64.12 293.81 3.04 -61.08 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.00 Total: 7.27 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 3.88 Total: -36.92 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -3.87 Total: -78.54 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.12 3.04 -61.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049579397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.647 kcal (2) G-P(sol) polarization free energy of solvation -64.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds