Wall clock time and date at job start Sun Mar 29 2020 21:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.53516 * 2 1 4 4 C 1.53121 * 109.50012 * 239.90702 * 2 1 3 5 5 C 1.53123 * 109.15709 * 182.40199 * 4 2 1 6 6 C 1.53036 * 109.27910 * 57.65405 * 5 4 2 7 7 N 1.46848 * 109.52325 * 300.81822 * 6 5 4 8 8 C 1.46901 * 111.00109 * 185.83663 * 7 6 5 9 9 C 1.53000 * 109.46769 * 45.79389 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99711 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00219 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46794 * 90.00022 * 14 12 10 16 16 H 1.48502 * 109.47140 * 210.00005 * 14 12 10 17 17 H 1.48501 * 109.46982 * 330.00118 * 14 12 10 18 18 C 1.46849 * 111.19595 * 61.74468 * 7 6 5 19 19 H 1.09003 * 109.46322 * 178.24309 * 18 7 6 20 20 C 1.52997 * 109.46674 * 58.26093 * 18 7 6 21 21 H 1.08999 * 109.47017 * 299.89959 * 1 2 3 22 22 H 1.08997 * 109.47449 * 59.89817 * 1 2 3 23 23 H 1.08995 * 109.47139 * 179.89829 * 1 2 3 24 24 H 1.09001 * 109.52047 * 302.30305 * 4 2 1 25 25 H 1.09000 * 109.52774 * 62.50053 * 4 2 1 26 26 H 1.09005 * 109.50464 * 177.59262 * 5 4 2 27 27 H 1.09000 * 109.50386 * 297.67051 * 5 4 2 28 28 H 1.08997 * 109.46297 * 180.80471 * 6 5 4 29 29 H 1.09006 * 109.46210 * 60.83495 * 6 5 4 30 30 H 1.09002 * 109.47401 * 285.79096 * 8 7 6 31 31 H 1.09001 * 109.46874 * 165.79109 * 8 7 6 32 32 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 33 33 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 34 34 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.46952 * 60.00139 * 20 18 7 36 36 H 1.08998 * 109.47270 * 179.97438 * 20 18 7 37 37 H 1.08997 * 109.47441 * 300.00455 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2488 5 6 3.5712 -0.7718 -1.2109 6 6 4.0230 -1.4729 0.0722 7 7 3.5094 -0.7421 1.2378 8 6 4.0373 -1.3059 2.4873 9 6 5.5425 -1.5405 2.3449 10 6 6.0841 -2.1195 3.6266 11 1 5.4211 -2.3015 4.4594 12 6 7.4260 -2.4169 3.7358 13 7 7.8987 -2.9217 4.8544 14 14 8.5726 -2.1027 2.2949 15 1 9.1238 -0.7272 2.3918 16 1 9.6857 -3.0853 2.3247 17 1 7.8198 -2.2458 1.0229 18 6 2.0410 -0.7235 1.2480 19 1 1.6906 -0.2024 2.1389 20 6 1.5130 -2.1594 1.2565 21 1 -0.3633 0.5123 0.8909 22 1 -0.3634 0.5154 -0.8890 23 1 -0.3633 -1.0276 -0.0018 24 1 1.6452 -1.7391 -1.2690 25 1 1.7157 -0.1869 -2.1399 26 1 3.9395 -1.3233 -2.0759 27 1 3.9678 0.2433 -1.2306 28 1 5.1121 -1.4961 0.1092 29 1 3.6375 -2.4925 0.0840 30 1 3.5402 -2.2530 2.6972 31 1 3.8539 -0.6100 3.3059 32 1 5.7260 -2.2364 1.5262 33 1 6.0396 -0.5935 2.1350 34 1 8.8426 -3.1312 4.9311 35 1 1.8761 -2.6747 2.1457 36 1 0.4231 -2.1458 1.2646 37 1 1.8636 -2.6809 0.3659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050564728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:38 Heat of formation + Delta-G solvation = -14.690634 kcal Electronic energy + Delta-G solvation = -14826.320683 eV Core-core repulsion = 12602.796635 eV Total energy + Delta-G solvation = -2223.524048 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61898 -34.88427 -32.64391 -32.25141 -30.10944 -27.79216 -26.04152 -24.80148 -22.25451 -22.06034 -19.55424 -18.11016 -16.95510 -15.54323 -15.38417 -14.43688 -14.16046 -14.01238 -13.87752 -12.87991 -12.79350 -12.64499 -12.46880 -12.29129 -12.03824 -11.44615 -11.34582 -11.23168 -10.97565 -10.58020 -10.46757 -10.26246 -10.06126 -9.87358 -9.70225 -9.55622 -9.10367 -8.51569 -7.65910 -6.03184 -4.00952 3.32824 3.39609 3.43236 4.39842 4.46730 4.80671 4.98437 5.07294 5.28255 5.31816 5.46291 5.51453 5.54234 5.70956 5.73765 5.81077 5.89119 5.93919 5.99035 6.08142 6.12675 6.18585 6.26745 6.33028 6.40185 6.46276 6.52614 6.70455 6.80919 7.21061 7.39217 7.63892 7.74758 7.89787 8.55147 9.01299 9.59393 11.10315 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050478 B = 0.007747 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.564835 B = 3613.478498 C = 3976.350273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 H 0.075 0.925 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.045 3.955 7 N -0.536 5.536 8 C 0.067 3.933 9 C -0.014 4.014 10 C -0.520 4.520 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.266 1.266 18 C 0.085 3.915 19 H 0.076 0.924 20 C -0.191 4.191 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.517 4.205 -11.910 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.093 0.907 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.083 4.083 7 N -0.259 5.259 8 C -0.059 4.059 9 C -0.052 4.052 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.543 5.543 14 Si 0.708 3.292 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.191 1.191 18 C -0.024 4.024 19 H 0.094 0.906 20 C -0.250 4.250 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.178 4.627 -11.849 17.610 hybrid contribution 0.452 -0.770 -0.495 1.021 sum -11.727 3.857 -12.343 17.457 Atomic orbital electron populations 1.21874 0.95552 1.01707 1.01335 1.21145 0.94558 0.99992 0.94514 0.90681 1.21658 0.96047 1.00299 0.97222 1.21605 0.95362 1.01458 0.97077 1.22203 1.01119 0.95025 0.89919 1.62260 1.05969 1.54334 1.03375 1.22150 0.97315 0.96944 0.89521 1.19715 0.91239 0.96550 0.97655 1.21092 0.94224 1.41619 0.98885 0.91122 1.25001 0.98148 0.94586 0.95661 1.69916 1.14292 1.44303 1.25814 0.86759 0.80531 0.78196 0.83674 1.20222 1.21471 1.19069 1.21620 0.88425 0.94562 0.97745 0.90551 1.22556 1.01044 0.98951 1.02414 0.92758 0.92974 0.92559 0.92227 0.92521 0.92182 0.91428 0.89764 0.94925 0.95131 0.91550 0.96374 0.96238 0.92755 0.92177 0.92426 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.82 37.16 0.33 -1.15 16 2 C -0.08 -1.02 2.66 -90.54 -0.24 -1.27 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.36 4.98 -26.61 -0.13 -1.50 16 5 C -0.12 -1.59 6.09 -26.65 -0.16 -1.75 16 6 C 0.05 0.76 4.55 -3.83 -0.02 0.74 16 7 N -0.54 -9.50 4.75 -226.69 -1.08 -10.58 16 8 C 0.07 1.40 5.09 -3.82 -0.02 1.38 16 9 C -0.01 -0.34 3.29 -27.88 -0.09 -0.44 16 10 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 11 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 13 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 14 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 18 C 0.09 1.25 2.47 -67.72 -0.17 1.08 16 19 H 0.08 1.13 8.12 -51.93 -0.42 0.71 16 20 C -0.19 -2.64 7.83 37.16 0.29 -2.35 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.55 6.41 -51.93 -0.33 0.22 16 24 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.58 5.81 -51.93 -0.30 1.28 16 29 H 0.03 0.55 6.19 -51.93 -0.32 0.23 16 30 H 0.03 0.64 6.07 -51.93 -0.32 0.33 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 32 H 0.02 0.44 5.26 -51.93 -0.27 0.17 16 33 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.06 0.92 6.36 -51.93 -0.33 0.59 16 36 H 0.06 0.68 6.41 -51.93 -0.33 0.35 16 37 H 0.06 0.83 4.80 -51.93 -0.25 0.59 16 LS Contribution 270.70 15.07 4.08 4.08 Total: -1.00 -30.09 270.70 -7.69 -37.78 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -6.16 Total: -2.53 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.64 Total: -18.74 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.30 Total: -38.01 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.09 -7.69 -37.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.094 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds