Wall clock time and date at job start Sun Mar 29 2020 21:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.53516 * 2 1 4 4 C 1.53121 * 109.50012 * 239.90702 * 2 1 3 5 5 C 1.53123 * 109.15709 * 182.40199 * 4 2 1 6 6 C 1.53036 * 109.27910 * 57.65405 * 5 4 2 7 7 N 1.46848 * 109.52325 * 300.81822 * 6 5 4 8 8 C 1.46901 * 111.00109 * 185.83663 * 7 6 5 9 9 C 1.53000 * 109.46769 * 45.79389 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99711 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00219 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.46794 * 90.00022 * 14 12 10 16 16 H 1.48502 * 109.47140 * 210.00005 * 14 12 10 17 17 H 1.48501 * 109.46982 * 330.00118 * 14 12 10 18 18 C 1.46849 * 111.19595 * 61.74468 * 7 6 5 19 19 H 1.09003 * 109.46322 * 178.24309 * 18 7 6 20 20 C 1.52997 * 109.46674 * 58.26093 * 18 7 6 21 21 H 1.08999 * 109.47017 * 299.89959 * 1 2 3 22 22 H 1.08997 * 109.47449 * 59.89817 * 1 2 3 23 23 H 1.08995 * 109.47139 * 179.89829 * 1 2 3 24 24 H 1.09001 * 109.52047 * 302.30305 * 4 2 1 25 25 H 1.09000 * 109.52774 * 62.50053 * 4 2 1 26 26 H 1.09005 * 109.50464 * 177.59262 * 5 4 2 27 27 H 1.09000 * 109.50386 * 297.67051 * 5 4 2 28 28 H 1.08997 * 109.46297 * 180.80471 * 6 5 4 29 29 H 1.09006 * 109.46210 * 60.83495 * 6 5 4 30 30 H 1.09002 * 109.47401 * 285.79096 * 8 7 6 31 31 H 1.09001 * 109.46874 * 165.79109 * 8 7 6 32 32 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 33 33 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 34 34 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.46952 * 60.00139 * 20 18 7 36 36 H 1.08998 * 109.47270 * 179.97438 * 20 18 7 37 37 H 1.08997 * 109.47441 * 300.00455 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2488 5 6 3.5712 -0.7718 -1.2109 6 6 4.0230 -1.4729 0.0722 7 7 3.5094 -0.7421 1.2378 8 6 4.0373 -1.3059 2.4873 9 6 5.5425 -1.5405 2.3449 10 6 6.0841 -2.1195 3.6266 11 1 5.4211 -2.3015 4.4594 12 6 7.4260 -2.4169 3.7358 13 7 7.8987 -2.9217 4.8544 14 14 8.5726 -2.1027 2.2949 15 1 9.1238 -0.7272 2.3918 16 1 9.6857 -3.0853 2.3247 17 1 7.8198 -2.2458 1.0229 18 6 2.0410 -0.7235 1.2480 19 1 1.6906 -0.2024 2.1389 20 6 1.5130 -2.1594 1.2565 21 1 -0.3633 0.5123 0.8909 22 1 -0.3634 0.5154 -0.8890 23 1 -0.3633 -1.0276 -0.0018 24 1 1.6452 -1.7391 -1.2690 25 1 1.7157 -0.1869 -2.1399 26 1 3.9395 -1.3233 -2.0759 27 1 3.9678 0.2433 -1.2306 28 1 5.1121 -1.4961 0.1092 29 1 3.6375 -2.4925 0.0840 30 1 3.5402 -2.2530 2.6972 31 1 3.8539 -0.6100 3.3059 32 1 5.7260 -2.2364 1.5262 33 1 6.0396 -0.5935 2.1350 34 1 8.8426 -3.1312 4.9311 35 1 1.8761 -2.6747 2.1457 36 1 0.4231 -2.1458 1.2646 37 1 1.8636 -2.6809 0.3659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050564728.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:37 Heat of formation + Delta-G solvation = -34.035453 kcal Electronic energy + Delta-G solvation = -14827.159537 eV Core-core repulsion = 12602.796635 eV Total energy + Delta-G solvation = -2224.362903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.84083 -36.39515 -34.65148 -33.36367 -31.86911 -29.08514 -27.14934 -26.49434 -23.78628 -23.23734 -21.16176 -19.29089 -19.04485 -16.91450 -16.70960 -16.10941 -15.78724 -15.44079 -14.93917 -14.69477 -14.30306 -13.93369 -13.70750 -13.45544 -13.26479 -12.90712 -12.81379 -12.49480 -12.46480 -12.00077 -11.86228 -11.76083 -11.55961 -11.46493 -11.27217 -10.96313 -10.90661 -10.75290 -9.08401 -8.32199 -6.36512 1.34259 1.35389 1.47665 2.34010 3.02952 3.05989 3.78151 3.95893 4.02288 4.18256 4.35695 4.41067 4.46957 4.51278 4.59381 4.61336 4.69062 4.84154 4.90706 4.91166 5.00750 5.02117 5.08162 5.16399 5.20562 5.27421 5.31465 5.41458 5.45734 5.47185 5.62053 5.66542 6.16005 6.30888 6.38852 6.71174 7.28083 8.84655 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050478 B = 0.007747 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.564835 B = 3613.478498 C = 3976.350273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.112 4.112 6 C 0.042 3.958 7 N -0.541 5.541 8 C 0.079 3.921 9 C -0.004 4.004 10 C -0.534 4.534 11 H 0.031 0.969 12 C 0.007 3.993 13 N -0.950 5.950 14 Si 0.952 3.048 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.248 1.248 18 C 0.080 3.920 19 H 0.071 0.929 20 C -0.185 4.185 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.023 0.977 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.018 0.982 34 H 0.267 0.733 35 H 0.036 0.964 36 H 0.081 0.919 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.431 4.923 -14.710 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.086 4.086 7 N -0.265 5.265 8 C -0.049 4.049 9 C -0.042 4.042 10 C -0.573 4.573 11 H 0.049 0.951 12 C -0.190 4.190 13 N -0.590 5.590 14 Si 0.775 3.225 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.171 1.171 18 C -0.028 4.028 19 H 0.089 0.911 20 C -0.243 4.243 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.120 5.351 -14.658 20.387 hybrid contribution 0.678 -1.005 0.465 1.299 sum -12.442 4.346 -14.193 19.368 Atomic orbital electron populations 1.21832 0.93457 1.02336 1.02324 1.21126 0.96204 0.99183 0.93272 0.91301 1.21659 0.94547 1.00851 0.97798 1.21586 0.96801 1.01007 0.95604 1.22243 0.99773 0.95462 0.91093 1.62238 1.08167 1.53966 1.02111 1.21840 0.95245 0.96556 0.91233 1.19572 0.93415 0.95947 0.95244 1.21414 0.94202 1.41929 0.99704 0.95101 1.25981 1.00047 0.94147 0.98821 1.70063 1.15043 1.45622 1.28315 0.85638 0.78153 0.78502 0.80237 1.19196 1.20675 1.17134 1.21778 0.86340 0.95492 0.99219 0.91095 1.22490 1.02540 0.97949 1.01319 0.92557 0.91301 0.92071 0.91780 0.90208 0.90409 0.91739 0.92031 0.95156 0.95892 0.92629 0.95837 0.96389 0.92391 0.94457 0.89998 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.82 71.98 0.64 -1.72 16 2 C -0.08 -1.72 2.66 -10.74 -0.03 -1.75 16 3 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 4 C -0.11 -2.24 4.98 30.68 0.15 -2.09 16 5 C -0.11 -2.73 6.09 30.65 0.19 -2.54 16 6 C 0.04 1.35 4.55 86.33 0.39 1.75 16 7 N -0.54 -18.82 4.75 -871.10 -4.14 -22.96 16 8 C 0.08 3.35 5.09 86.30 0.44 3.78 16 9 C 0.00 -0.21 3.29 29.85 0.10 -0.11 16 10 C -0.53 -31.91 9.66 25.60 0.25 -31.67 16 11 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 12 C 0.01 0.42 5.47 84.66 0.46 0.88 16 13 N -0.95 -60.73 13.96 21.45 0.30 -60.44 16 14 Si 0.95 45.44 27.47 68.60 1.88 47.33 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 17 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 18 C 0.08 2.24 2.47 44.94 0.11 2.35 16 19 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 20 C -0.18 -4.84 7.83 71.98 0.56 -4.27 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.97 6.41 -2.39 -0.02 0.95 16 24 H 0.06 1.26 6.56 -2.39 -0.02 1.25 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 2.24 5.81 -2.39 -0.01 2.23 16 29 H 0.03 0.98 6.19 -2.38 -0.01 0.97 16 30 H 0.02 1.00 6.07 -2.39 -0.01 0.98 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.02 1.13 5.26 -2.39 -0.01 1.12 16 33 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 34 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 35 H 0.04 1.13 6.36 -2.39 -0.02 1.12 16 36 H 0.08 1.73 6.41 -2.39 -0.02 1.71 16 37 H 0.06 1.59 4.80 -2.39 -0.01 1.58 16 Total: -1.00 -65.80 270.70 2.27 -63.53 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.97 Total: 7.94 kcal Atomic # 6 Polarization: -38.65 SS G_CDS: 3.26 Total: -35.39 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -3.84 Total: -83.40 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.88 Total: 47.33 kcal Total: -65.80 2.27 -63.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564728.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.492 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds