Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53037 * 109.46362 * 240.02403 * 2 1 3 5 5 H 1.08994 * 109.50700 * 300.74895 * 4 2 1 6 6 C 1.53007 * 109.50160 * 60.86295 * 4 2 1 7 7 C 1.53124 * 109.28194 * 180.79009 * 4 2 1 8 8 C 1.53117 * 109.14511 * 57.67189 * 7 4 2 9 9 C 1.53033 * 109.28084 * 302.33710 * 8 7 4 10 10 N 1.46840 * 109.52095 * 59.18404 * 9 8 7 11 11 C 1.46900 * 110.99929 * 174.15885 * 10 9 8 12 12 C 1.53002 * 109.47525 * 314.20793 * 11 10 9 13 13 C 1.50694 * 109.47197 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00684 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99758 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99977 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99968 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47007 * 60.00254 * 17 15 13 19 19 H 1.48504 * 109.47025 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47248 * 300.00238 * 17 15 13 21 21 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 24 24 H 1.09005 * 109.47185 * 60.00202 * 6 4 2 25 25 H 1.09002 * 109.47008 * 180.02562 * 6 4 2 26 26 H 1.08996 * 109.47117 * 299.99921 * 6 4 2 27 27 H 1.08998 * 109.53034 * 297.76622 * 7 4 2 28 28 H 1.08993 * 109.57184 * 177.60202 * 7 4 2 29 29 H 1.09003 * 109.49712 * 182.39649 * 8 7 4 30 30 H 1.09000 * 109.50804 * 62.28558 * 8 7 4 31 31 H 1.08996 * 109.46552 * 299.16475 * 9 8 7 32 32 H 1.09001 * 109.45614 * 179.19261 * 9 8 7 33 33 H 1.09001 * 109.47308 * 74.21254 * 11 10 9 34 34 H 1.09006 * 109.47211 * 194.20987 * 11 10 9 35 35 H 1.08999 * 109.46748 * 300.00270 * 12 11 10 36 36 H 1.08999 * 109.46358 * 59.99970 * 12 11 10 37 37 H 0.96994 * 120.00079 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 1 1.6659 -1.7447 -1.2576 6 6 1.5480 0.0128 -2.4992 7 6 3.5710 -0.7358 -1.2358 8 6 4.0548 -1.4187 0.0464 9 6 3.4865 -0.6778 1.2589 10 7 2.0194 -0.6919 1.1992 11 6 1.4374 -0.1109 2.4165 12 6 2.1498 -0.6809 3.6447 13 6 1.5531 -0.0844 4.8933 14 1 0.7463 0.6295 4.8186 15 6 2.0367 -0.4509 6.1315 16 7 3.0189 -1.3207 6.2227 17 14 1.2967 0.2879 7.6793 18 1 -0.1486 -0.0466 7.7453 19 1 1.9882 -0.2653 8.8714 20 1 1.4625 1.7634 7.6518 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.9240 1.0359 -2.4914 25 1 1.9111 -0.5014 -3.3891 26 1 0.4581 0.0263 -2.5071 27 1 3.9456 0.2873 -1.2673 28 1 3.9388 -1.2853 -2.1022 29 1 5.1439 -1.3946 0.0828 30 1 3.7126 -2.4535 0.0591 31 1 3.8404 0.3531 1.2532 32 1 3.8175 -1.1703 2.1732 33 1 1.5588 0.9721 2.3961 34 1 0.3765 -0.3568 2.4651 35 1 2.0283 -1.7639 3.6650 36 1 3.2106 -0.4351 3.5960 37 1 3.3594 -1.5783 7.0936 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050564729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = -22.806872 kcal Electronic energy + Delta-G solvation = -14666.232920 eV Core-core repulsion = 12442.356925 eV Total energy + Delta-G solvation = -2223.875995 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.18087 -34.72994 -32.74125 -32.65911 -29.59432 -27.52862 -25.81620 -24.70446 -22.41661 -20.99876 -19.66426 -19.18140 -16.45448 -15.10724 -14.86688 -14.49430 -14.39434 -14.22416 -13.57685 -12.99369 -12.63879 -12.30272 -12.13962 -11.94218 -11.70110 -11.49667 -11.35460 -10.99385 -10.90370 -10.58889 -10.53084 -10.49508 -10.05881 -9.88658 -9.67226 -9.22373 -9.02334 -8.31532 -7.57651 -5.98215 -4.00345 3.34583 3.38773 3.41311 4.39958 4.55487 4.94071 4.98475 5.14237 5.37366 5.40427 5.59461 5.64818 5.66307 5.76066 5.78159 5.91104 6.00180 6.04431 6.14280 6.16557 6.26503 6.29620 6.41366 6.47083 6.49165 6.54893 6.69862 6.74349 7.00970 7.60182 7.70175 7.89081 7.90356 8.09523 8.46272 9.06265 9.63097 11.13211 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052432 B = 0.006930 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.893670 B = 4039.559281 C = 4458.629658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.086 3.914 3 H 0.031 0.969 4 C -0.084 4.084 5 H 0.076 0.924 6 C -0.147 4.147 7 C -0.114 4.114 8 C -0.117 4.117 9 C 0.051 3.949 10 N -0.535 5.535 11 C 0.063 3.937 12 C 0.021 3.979 13 C -0.521 4.521 14 H 0.053 0.947 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.278 1.278 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.023 0.977 32 H 0.093 0.907 33 H 0.016 0.984 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 1.687 -14.528 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 H 0.049 0.951 4 C -0.103 4.103 5 H 0.094 0.906 6 C -0.204 4.204 7 C -0.152 4.152 8 C -0.155 4.155 9 C -0.077 4.077 10 N -0.260 5.260 11 C -0.064 4.064 12 C -0.017 4.017 13 C -0.560 4.560 14 H 0.071 0.929 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.111 0.889 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.859 1.110 -14.419 14.488 hybrid contribution -0.080 1.274 1.012 1.629 sum -0.939 2.385 -13.407 13.650 Atomic orbital electron populations 1.21931 0.94936 1.02321 1.01292 1.21582 0.95079 0.94896 0.90724 0.95141 1.21183 0.95222 1.00191 0.93701 0.90565 1.21877 1.01169 1.00154 0.97227 1.21635 0.95411 1.00336 0.97797 1.21611 0.99275 1.00322 0.94282 1.22174 0.88041 0.98366 0.99110 1.62047 1.06790 1.54976 1.02219 1.22316 0.99264 0.95481 0.89304 1.19247 0.95480 0.96941 0.89985 1.21161 1.18568 1.25150 0.91142 0.92862 1.24989 0.95079 0.95137 0.99078 1.69953 1.26403 1.32608 1.24396 0.86656 0.79363 0.79395 0.82567 1.20216 1.21270 1.20325 0.92303 0.92017 0.92745 0.93080 0.92964 0.92401 0.92690 0.92443 0.92121 0.91349 0.95865 0.88888 0.96531 0.91784 0.95737 0.96211 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.45 37.16 0.31 -1.80 16 2 C 0.09 1.35 1.92 -67.73 -0.13 1.22 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.08 -1.12 2.40 -90.53 -0.22 -1.33 16 5 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.15 -1.58 8.87 37.16 0.33 -1.25 16 7 C -0.11 -1.47 5.29 -26.61 -0.14 -1.62 16 8 C -0.12 -1.72 6.09 -26.65 -0.16 -1.89 16 9 C 0.05 0.93 4.85 -3.84 -0.02 0.91 16 10 N -0.54 -10.15 4.64 -226.70 -1.05 -11.21 16 11 C 0.06 1.38 4.30 -3.82 -0.02 1.36 16 12 C 0.02 0.54 4.22 -27.88 -0.12 0.43 16 13 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H 0.06 0.90 6.55 -51.93 -0.34 0.56 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.05 0.65 6.45 -51.93 -0.33 0.32 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.59 6.45 -51.93 -0.34 0.25 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.93 5.81 -51.93 -0.30 1.63 16 33 H 0.02 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.06 1.39 6.84 -51.93 -0.36 1.04 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.02 0.54 6.21 -51.93 -0.32 0.22 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 281.75 15.07 4.25 4.25 Total: -1.00 -29.61 281.75 -8.26 -37.87 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -6.60 Total: -3.75 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -0.57 Total: -17.66 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: -0.32 Total: -37.55 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.61 -8.26 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.066 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds