Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46374 * 2 1 4 4 C 1.53037 * 109.46362 * 240.02403 * 2 1 3 5 5 H 1.08994 * 109.50700 * 300.74895 * 4 2 1 6 6 C 1.53007 * 109.50160 * 60.86295 * 4 2 1 7 7 C 1.53124 * 109.28194 * 180.79009 * 4 2 1 8 8 C 1.53117 * 109.14511 * 57.67189 * 7 4 2 9 9 C 1.53033 * 109.28084 * 302.33710 * 8 7 4 10 10 N 1.46840 * 109.52095 * 59.18404 * 9 8 7 11 11 C 1.46900 * 110.99929 * 174.15885 * 10 9 8 12 12 C 1.53002 * 109.47525 * 314.20793 * 11 10 9 13 13 C 1.50694 * 109.47197 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00684 * 0.02562 * 13 12 11 15 15 C 1.37883 * 119.99758 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99977 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99968 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47007 * 60.00254 * 17 15 13 19 19 H 1.48504 * 109.47025 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47248 * 300.00238 * 17 15 13 21 21 H 1.09002 * 109.47153 * 299.99534 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99707 * 1 2 3 24 24 H 1.09005 * 109.47185 * 60.00202 * 6 4 2 25 25 H 1.09002 * 109.47008 * 180.02562 * 6 4 2 26 26 H 1.08996 * 109.47117 * 299.99921 * 6 4 2 27 27 H 1.08998 * 109.53034 * 297.76622 * 7 4 2 28 28 H 1.08993 * 109.57184 * 177.60202 * 7 4 2 29 29 H 1.09003 * 109.49712 * 182.39649 * 8 7 4 30 30 H 1.09000 * 109.50804 * 62.28558 * 8 7 4 31 31 H 1.08996 * 109.46552 * 299.16475 * 9 8 7 32 32 H 1.09001 * 109.45614 * 179.19261 * 9 8 7 33 33 H 1.09001 * 109.47308 * 74.21254 * 11 10 9 34 34 H 1.09006 * 109.47211 * 194.20987 * 11 10 9 35 35 H 1.08999 * 109.46748 * 300.00270 * 12 11 10 36 36 H 1.08999 * 109.46358 * 59.99970 * 12 11 10 37 37 H 0.96994 * 120.00079 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 1 1.6659 -1.7447 -1.2576 6 6 1.5480 0.0128 -2.4992 7 6 3.5710 -0.7358 -1.2358 8 6 4.0548 -1.4187 0.0464 9 6 3.4865 -0.6778 1.2589 10 7 2.0194 -0.6919 1.1992 11 6 1.4374 -0.1109 2.4165 12 6 2.1498 -0.6809 3.6447 13 6 1.5531 -0.0844 4.8933 14 1 0.7463 0.6295 4.8186 15 6 2.0367 -0.4509 6.1315 16 7 3.0189 -1.3207 6.2227 17 14 1.2967 0.2879 7.6793 18 1 -0.1486 -0.0466 7.7453 19 1 1.9882 -0.2653 8.8714 20 1 1.4625 1.7634 7.6518 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.9240 1.0359 -2.4914 25 1 1.9111 -0.5014 -3.3891 26 1 0.4581 0.0263 -2.5071 27 1 3.9456 0.2873 -1.2673 28 1 3.9388 -1.2853 -2.1022 29 1 5.1439 -1.3946 0.0828 30 1 3.7126 -2.4535 0.0591 31 1 3.8404 0.3531 1.2532 32 1 3.8175 -1.1703 2.1732 33 1 1.5588 0.9721 2.3961 34 1 0.3765 -0.3568 2.4651 35 1 2.0283 -1.7639 3.6650 36 1 3.2106 -0.4351 3.5960 37 1 3.3594 -1.5783 7.0936 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050564729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = -40.867775 kcal Electronic energy + Delta-G solvation = -14667.016099 eV Core-core repulsion = 12442.356925 eV Total energy + Delta-G solvation = -2224.659174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52139 -36.33594 -34.64421 -33.96492 -31.39808 -28.85352 -27.07521 -26.51699 -24.07412 -22.25414 -21.24791 -20.50507 -18.60752 -16.68892 -16.38321 -16.25749 -15.82560 -15.45575 -14.88103 -14.52596 -14.30880 -13.84313 -13.44420 -13.25150 -13.03099 -12.88875 -12.76413 -12.65377 -12.48817 -12.34384 -11.98726 -11.78958 -11.59031 -11.39795 -11.27983 -10.90178 -10.88198 -10.53918 -9.13960 -8.21520 -6.33219 1.38775 1.42292 1.50282 2.39236 3.05433 3.11525 3.83415 3.89303 3.97893 4.18068 4.39501 4.42859 4.47165 4.56514 4.58602 4.69926 4.74347 4.85085 4.92754 4.97953 5.01656 5.03934 5.08808 5.16268 5.22586 5.30342 5.36522 5.42067 5.48772 5.58261 5.65952 5.78318 6.10613 6.35162 6.41615 6.83007 7.35776 8.90393 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052432 B = 0.006930 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.893670 B = 4039.559281 C = 4458.629658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.081 3.919 3 H 0.025 0.975 4 C -0.081 4.081 5 H 0.071 0.929 6 C -0.140 4.140 7 C -0.110 4.110 8 C -0.111 4.111 9 C 0.051 3.949 10 N -0.543 5.543 11 C 0.080 3.920 12 C 0.031 3.969 13 C -0.548 4.548 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.267 1.267 21 H 0.043 0.957 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.017 0.983 32 H 0.056 0.944 33 H 0.012 0.988 34 H 0.065 0.935 35 H -0.008 1.008 36 H -0.001 1.001 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 2.459 -15.892 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.043 0.957 4 C -0.100 4.100 5 H 0.089 0.911 6 C -0.198 4.198 7 C -0.148 4.148 8 C -0.149 4.149 9 C -0.077 4.077 10 N -0.268 5.268 11 C -0.047 4.047 12 C -0.007 4.007 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.192 1.192 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.102 0.898 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.083 0.917 35 H 0.010 0.990 36 H 0.017 0.983 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.592 1.886 -15.807 15.999 hybrid contribution 0.181 1.007 1.418 1.749 sum -1.411 2.893 -14.389 14.745 Atomic orbital electron populations 1.21919 0.93821 1.02354 1.02030 1.21781 0.96075 0.94620 0.90236 0.95689 1.21181 0.95457 0.99888 0.93452 0.91083 1.21829 1.01648 1.00090 0.96231 1.21637 0.95166 1.00629 0.97338 1.21578 1.00081 0.99624 0.93618 1.22125 0.87921 0.98101 0.99524 1.62053 1.07094 1.55353 1.02294 1.21961 0.98778 0.94811 0.89149 1.19061 0.94749 0.94907 0.91940 1.21593 1.19012 1.25604 0.92383 0.92347 1.25966 0.95352 0.95388 1.02854 1.70095 1.27707 1.33834 1.25474 0.85475 0.78783 0.78824 0.77805 1.19090 1.20627 1.19216 0.93818 0.92296 0.89778 0.92770 0.91166 0.91677 0.92370 0.89808 0.90577 0.91797 0.96493 0.92534 0.96990 0.91674 0.98966 0.98291 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.45 71.98 0.61 -3.31 16 2 C 0.08 2.46 1.92 44.94 0.09 2.55 16 3 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.08 -1.95 2.40 -10.74 -0.03 -1.98 16 5 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 6 C -0.14 -2.51 8.87 71.98 0.64 -1.87 16 7 C -0.11 -2.57 5.29 30.67 0.16 -2.41 16 8 C -0.11 -3.19 6.09 30.64 0.19 -3.00 16 9 C 0.05 1.94 4.85 86.33 0.42 2.35 16 10 N -0.54 -20.94 4.64 -871.14 -4.04 -24.98 16 11 C 0.08 3.63 4.30 86.30 0.37 4.00 16 12 C 0.03 1.70 4.22 29.85 0.13 1.83 16 13 C -0.55 -32.23 9.11 25.60 0.23 -31.99 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.00 0.15 5.46 84.66 0.46 0.61 16 16 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 17 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H 0.04 1.31 6.55 -2.39 -0.02 1.29 16 22 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.08 1.78 6.45 -2.38 -0.02 1.76 16 24 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 1.08 6.45 -2.39 -0.02 1.06 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.06 2.51 5.81 -2.39 -0.01 2.50 16 33 H 0.01 0.54 8.08 -2.39 -0.02 0.52 16 34 H 0.06 2.90 6.84 -2.38 -0.02 2.88 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.00 -0.07 6.21 -2.39 -0.01 -0.08 16 37 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -64.92 281.75 2.54 -62.38 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 1.00 Total: 6.32 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 3.27 Total: -33.23 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -3.76 Total: -82.50 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.92 2.54 -62.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050564729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.511 kcal (2) G-P(sol) polarization free energy of solvation -64.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds