Wall clock time and date at job start Sun Mar 29 2020 21:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.52563 * 2 1 4 4 C 1.53119 * 109.52432 * 239.87074 * 2 1 3 5 5 C 1.53043 * 109.27960 * 182.44508 * 4 2 1 6 6 N 1.46847 * 109.52410 * 59.17697 * 5 4 2 7 7 C 1.46901 * 110.99723 * 174.16265 * 6 5 4 8 8 C 1.53000 * 109.47093 * 314.21164 * 7 6 5 9 9 C 1.50699 * 109.46818 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00522 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99935 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00246 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00104 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47047 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47155 * 119.99895 * 13 11 9 16 16 H 1.48500 * 109.46947 * 239.99746 * 13 11 9 17 17 C 1.46847 * 111.19846 * 298.26001 * 6 5 4 18 18 H 1.09002 * 109.46448 * 301.72463 * 17 6 5 19 19 C 1.53005 * 109.46191 * 181.74532 * 17 6 5 20 20 C 1.53044 * 109.51335 * 61.73741 * 17 6 5 21 21 H 1.08995 * 109.47236 * 180.12247 * 1 2 3 22 22 H 1.08998 * 109.47418 * 300.13091 * 1 2 3 23 23 H 1.09011 * 109.46975 * 60.12452 * 1 2 3 24 24 H 1.09000 * 109.50319 * 62.50380 * 4 2 1 25 25 H 1.08998 * 109.50623 * 302.38155 * 4 2 1 26 26 H 1.09004 * 109.45911 * 299.16296 * 5 4 2 27 27 H 1.08994 * 109.45457 * 179.19516 * 5 4 2 28 28 H 1.08995 * 109.47335 * 74.21485 * 7 6 5 29 29 H 1.09004 * 109.46599 * 194.21169 * 7 6 5 30 30 H 1.09003 * 109.46948 * 299.99779 * 8 7 6 31 31 H 1.08990 * 109.47443 * 60.00337 * 8 7 6 32 32 H 0.96994 * 120.00066 * 180.02562 * 12 11 9 33 33 H 1.09003 * 109.46665 * 59.98015 * 19 17 6 34 34 H 1.08991 * 109.47182 * 179.97438 * 19 17 6 35 35 H 1.09002 * 109.46761 * 299.98067 * 19 17 6 36 36 H 1.09001 * 109.49858 * 60.76701 * 20 17 6 37 37 H 1.09000 * 109.49965 * 180.88251 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7244 -1.2482 5 6 3.5708 -0.7746 -1.2120 6 7 4.0102 -1.4790 -0.0007 7 6 5.4670 -1.6679 -0.0007 8 6 5.9158 -2.1723 -1.3737 9 6 7.4102 -2.3666 -1.3736 10 1 7.9827 -2.1515 -0.4835 11 6 8.0468 -2.8181 -2.5102 12 7 7.3499 -3.0787 -3.5947 13 14 9.8993 -3.0583 -2.5103 14 1 10.4455 -2.6960 -1.1778 15 1 10.2142 -4.4793 -2.8051 16 1 10.5110 -2.1901 -3.5482 17 6 3.5707 -0.7759 1.2113 18 1 3.9674 0.2394 1.2062 19 6 4.0855 -1.5181 2.4463 20 6 2.0415 -0.7258 1.2472 21 1 -0.3633 -1.0276 0.0022 22 1 -0.3634 0.5158 0.8888 23 1 -0.3633 0.5120 -0.8912 24 1 1.7162 -0.1879 -2.1394 25 1 1.6447 -1.7393 -1.2684 26 1 3.9675 0.2407 -1.2057 27 1 3.9377 -1.3024 -2.0923 28 1 5.9565 -0.7183 0.2153 29 1 5.7386 -2.3984 0.7614 30 1 5.4263 -3.1219 -1.5897 31 1 5.6442 -1.4419 -2.1357 32 1 7.7977 -3.3966 -4.3942 33 1 5.1747 -1.5536 2.4210 34 1 3.7598 -0.9961 3.3459 35 1 3.6889 -2.5334 2.4514 36 1 1.6446 -1.7407 1.2663 37 1 1.7159 -0.1901 2.1389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051731799.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:32 Heat of formation + Delta-G solvation = -42.845209 kcal Electronic energy + Delta-G solvation = -14585.576186 eV Core-core repulsion = 12360.831264 eV Total energy + Delta-G solvation = -2224.744922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.43550 -36.42719 -34.91712 -33.49925 -31.45863 -28.81644 -27.61352 -25.98644 -24.25389 -22.19058 -21.19706 -20.53386 -18.60869 -16.65559 -16.51555 -16.22927 -15.71699 -15.37116 -15.01479 -14.63481 -14.22594 -13.70472 -13.52103 -13.14436 -13.10105 -12.82472 -12.73609 -12.67169 -12.51806 -12.30644 -12.04860 -11.83446 -11.57864 -11.43913 -11.26528 -10.94431 -10.88261 -10.54260 -9.13589 -8.21872 -6.33317 1.38914 1.39436 1.52912 2.39110 3.06944 3.11458 3.84713 3.89827 3.92048 4.19889 4.36460 4.42199 4.45885 4.57527 4.59658 4.74117 4.81677 4.83180 4.89130 4.97546 4.99468 5.05738 5.08801 5.18791 5.25292 5.30632 5.35535 5.41234 5.45113 5.58031 5.66353 5.78400 6.10676 6.35257 6.41704 6.83398 7.35877 8.90493 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.050829 B = 0.006805 C = 0.006148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.734483 B = 4113.454186 C = 4553.338504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.064 0.936 4 C -0.104 4.104 5 C 0.052 3.948 6 N -0.542 5.542 7 C 0.080 3.920 8 C 0.030 3.970 9 C -0.545 4.545 10 H 0.058 0.942 11 C 0.002 3.998 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.262 1.262 15 H -0.276 1.276 16 H -0.277 1.277 17 C 0.073 3.927 18 H 0.027 0.973 19 C -0.142 4.142 20 C -0.097 4.097 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.017 0.983 27 H 0.056 0.944 28 H 0.012 0.988 29 H 0.065 0.935 30 H -0.008 1.008 31 H -0.001 1.001 32 H 0.264 0.736 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.425 6.176 9.296 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 H 0.082 0.918 4 C -0.142 4.142 5 C -0.076 4.076 6 N -0.267 5.267 7 C -0.047 4.047 8 C -0.008 4.008 9 C -0.583 4.583 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.572 5.572 13 Si 0.791 3.209 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.035 4.035 18 H 0.045 0.955 19 C -0.199 4.199 20 C -0.135 4.135 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.031 0.969 29 H 0.084 0.916 30 H 0.010 0.990 31 H 0.017 0.983 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.638 5.662 9.141 15.845 hybrid contribution 1.585 0.474 -0.588 1.755 sum -10.054 6.136 8.553 14.556 Atomic orbital electron populations 1.21743 0.93326 1.02106 1.02305 1.21186 0.96883 0.98712 0.94355 0.91802 1.21633 0.92800 1.01126 0.98630 1.22120 0.96876 0.95267 0.93359 1.62072 1.12585 1.49697 1.02368 1.21965 0.86130 0.97882 0.98772 1.19074 0.94753 0.94756 0.92169 1.21647 0.93906 1.44515 0.98240 0.92345 1.25965 1.03730 0.94879 0.95025 1.70110 1.37737 1.46336 1.03012 0.85369 0.79016 0.77958 0.78516 1.18615 1.20197 1.20275 1.21791 0.96835 0.94759 0.90098 0.95525 1.21852 1.00565 1.00964 0.96552 1.21655 0.92448 1.01249 0.98125 0.92622 0.91481 0.92267 0.90857 0.91855 0.96467 0.92528 0.96935 0.91638 0.98958 0.98272 0.92707 0.93734 0.90021 0.92231 0.91552 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.20 71.98 0.66 -1.80 16 2 C -0.09 -2.17 2.79 -10.72 -0.03 -2.20 16 3 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.10 -3.00 5.38 30.65 0.16 -2.83 16 5 C 0.05 1.95 4.85 86.33 0.42 2.37 16 6 N -0.54 -20.79 4.64 -871.07 -4.04 -24.83 16 7 C 0.08 3.59 4.30 86.30 0.37 3.96 16 8 C 0.03 1.64 4.22 29.85 0.13 1.77 16 9 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 10 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 11 C 0.00 0.11 5.46 84.65 0.46 0.57 16 12 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 13 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 14 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 16 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 17 C 0.07 2.21 2.40 44.94 0.11 2.32 16 18 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 19 C -0.14 -3.82 8.78 71.98 0.63 -3.19 16 20 C -0.10 -2.32 4.66 30.64 0.14 -2.18 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 2.51 5.81 -2.39 -0.01 2.50 16 28 H 0.01 0.56 8.08 -2.39 -0.02 0.54 16 29 H 0.07 2.90 6.84 -2.38 -0.02 2.88 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.00 -0.06 6.21 -2.39 -0.01 -0.07 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.04 1.32 6.55 -2.39 -0.02 1.30 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -64.79 285.33 2.55 -62.24 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.00 Total: 6.05 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 3.29 Total: -32.98 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -3.76 Total: -82.35 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.79 2.55 -62.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051731799.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.390 kcal (2) G-P(sol) polarization free energy of solvation -64.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds