Wall clock time and date at job start Sun Mar 29 2020 21:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47371 * 2 1 4 4 C 1.53004 * 109.47062 * 240.00465 * 2 1 3 5 5 C 1.52999 * 109.46955 * 299.99738 * 4 2 1 6 6 C 1.52998 * 109.47197 * 300.00017 * 5 4 2 7 7 C 1.53004 * 109.47182 * 60.00122 * 6 5 4 8 8 C 1.52998 * 109.47315 * 120.00311 * 2 1 3 9 9 H 1.09006 * 109.47095 * 179.97438 * 8 2 1 10 10 N 1.46893 * 109.47045 * 299.99856 * 8 2 1 11 11 C 1.46901 * 111.00360 * 303.95182 * 10 8 2 12 12 C 1.46906 * 110.99932 * 179.97438 * 10 8 2 13 13 C 1.50703 * 109.47109 * 190.00029 * 12 10 8 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99989 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46926 * 299.99488 * 17 15 13 21 21 H 1.09000 * 109.46749 * 299.99731 * 1 2 3 22 22 H 1.09003 * 109.47532 * 59.99631 * 1 2 3 23 23 H 1.09000 * 109.47371 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47025 * 59.99594 * 4 2 1 25 25 H 1.08997 * 109.47316 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.47288 * 60.00247 * 5 4 2 27 27 H 1.09000 * 109.47271 * 179.97438 * 5 4 2 28 28 H 1.08998 * 109.47191 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.47252 * 299.99769 * 6 5 4 30 30 H 1.08993 * 109.47018 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.46921 * 60.00005 * 7 6 5 32 32 H 1.08995 * 109.47046 * 296.04847 * 11 10 8 33 33 H 1.09008 * 109.46903 * 56.04730 * 11 10 8 34 34 H 1.08999 * 109.47457 * 176.04446 * 11 10 8 35 35 H 1.08992 * 109.47459 * 309.99948 * 12 10 8 36 36 H 1.09004 * 109.47040 * 70.00098 * 12 10 8 37 37 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0002 7 6 1.5300 -2.1638 1.2491 8 6 2.0400 -0.7213 1.2492 9 1 3.1301 -0.7217 1.2489 10 7 1.5504 -0.0289 2.4486 11 6 1.9427 1.3867 2.4363 12 6 2.0210 -0.6954 3.6702 13 6 1.3088 -0.1155 4.8651 14 1 0.5792 0.6694 4.7303 15 6 1.5886 -0.5870 6.1301 16 7 2.4766 -1.5431 6.2941 17 14 0.7053 0.1313 7.6111 18 1 -0.7575 -0.0791 7.4651 19 1 1.1810 -0.5424 8.8460 20 1 0.9897 1.5862 7.6994 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6765 -0.2073 -2.1393 25 1 3.1299 -0.7216 -1.2492 26 1 0.4400 -2.1637 -1.2494 27 1 1.8929 -2.6774 -2.1396 28 1 1.6771 -3.9128 -0.0005 29 1 3.1300 -2.8850 -0.0002 30 1 1.8938 -2.6774 2.1390 31 1 0.4400 -2.1639 1.2491 32 1 3.0291 1.4631 2.4793 33 1 1.5813 1.8560 1.5212 34 1 1.5085 1.8916 3.2993 35 1 1.8115 -1.7631 3.6053 36 1 3.0948 -0.5417 3.7774 37 1 2.6732 -1.8750 7.1841 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055386495.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:54 Heat of formation + Delta-G solvation = -17.497246 kcal Electronic energy + Delta-G solvation = -14969.642715 eV Core-core repulsion = 12745.996963 eV Total energy + Delta-G solvation = -2223.645752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.22946 -35.32953 -32.50000 -31.56828 -29.42996 -27.13106 -26.37389 -24.37107 -22.40221 -21.40409 -19.99250 -17.96883 -16.47909 -15.58394 -14.80774 -14.49615 -14.04930 -13.84496 -13.25174 -12.96806 -12.79479 -12.34027 -12.14049 -11.71949 -11.46374 -11.16308 -11.03238 -10.82609 -10.75172 -10.64891 -10.58919 -10.44255 -10.12175 -9.89751 -9.62145 -9.22043 -9.10195 -8.36254 -7.10874 -5.98023 -3.98592 3.35820 3.39610 3.42728 4.45730 4.87352 5.01781 5.05247 5.33122 5.38516 5.54868 5.66879 5.67722 5.80030 5.89213 5.91483 6.01249 6.11907 6.16801 6.30664 6.33113 6.35283 6.41321 6.44357 6.48458 6.69614 6.75902 6.84861 6.85582 6.99395 7.41611 7.43545 7.86703 8.18628 8.30830 8.64938 9.09125 9.65025 11.12864 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048417 B = 0.007947 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.172929 B = 3522.496760 C = 3795.479530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.065 0.935 4 C -0.112 4.112 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.115 4.115 8 C 0.092 3.908 9 H 0.024 0.976 10 N -0.534 5.534 11 C 0.036 3.964 12 C 0.189 3.811 13 C -0.505 4.505 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 H 0.068 0.932 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.008 0.992 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.036 0.964 36 H -0.013 1.013 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 0.647 -13.025 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.017 4.017 9 H 0.042 0.958 10 N -0.258 5.258 11 C -0.113 4.113 12 C 0.064 3.936 13 C -0.544 4.544 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.204 1.204 21 H 0.087 0.913 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.004 0.996 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.745 0.514 -12.869 12.997 hybrid contribution 0.601 0.365 0.960 1.190 sum -1.144 0.879 -11.909 11.996 Atomic orbital electron populations 1.21779 0.94817 1.01843 1.01030 1.21177 0.96792 0.98692 0.93862 0.91692 1.21558 1.00122 0.95801 0.97558 1.21562 1.01012 0.95613 0.97436 1.21532 1.00398 0.98612 0.94981 1.21652 1.01580 0.94800 0.97180 1.21497 0.95654 0.93861 0.90721 0.95804 1.62130 1.59697 1.01590 1.02422 1.22248 0.97092 0.90989 1.00977 1.19795 0.93365 0.95046 0.85360 1.21156 1.22502 1.20148 0.90550 0.92024 1.24985 0.95429 0.95260 0.99008 1.69953 1.33446 1.27909 1.22690 0.86582 0.80032 0.79103 0.81795 1.20212 1.21410 1.20361 0.91255 0.94458 0.92518 0.92512 0.92577 0.91721 0.92891 0.92385 0.92566 0.91196 0.91131 0.97382 0.93325 0.91102 0.94567 0.99564 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.34 37.16 0.31 -1.72 16 2 C -0.09 -1.31 2.23 -90.62 -0.20 -1.51 16 3 H 0.06 0.99 6.26 -51.93 -0.33 0.66 16 4 C -0.11 -1.44 5.45 -26.73 -0.15 -1.59 16 5 C -0.12 -1.47 5.65 -26.73 -0.15 -1.62 16 6 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 7 C -0.11 -2.01 4.72 -26.73 -0.13 -2.14 16 8 C 0.09 1.69 1.64 -67.72 -0.11 1.58 16 9 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 10 N -0.53 -11.66 3.86 -236.33 -0.91 -12.57 16 11 C 0.04 0.71 8.99 60.07 0.54 1.25 16 12 C 0.19 5.01 4.54 -4.97 -0.02 4.98 16 13 C -0.50 -14.39 8.51 -34.44 -0.29 -14.68 16 14 H 0.06 1.74 7.10 -52.48 -0.37 1.36 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 21 H 0.07 1.16 7.60 -51.93 -0.39 0.77 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.83 4.81 -51.93 -0.25 0.58 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.40 6.20 -51.93 -0.32 1.08 16 31 H 0.07 1.26 6.43 -51.93 -0.33 0.92 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.05 0.83 6.01 -51.92 -0.31 0.52 16 34 H 0.07 1.51 6.86 -51.93 -0.36 1.15 16 35 H 0.04 1.01 5.83 -51.93 -0.30 0.71 16 36 H -0.01 -0.39 8.12 -51.93 -0.42 -0.81 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 274.55 15.07 4.14 4.14 Total: -1.00 -29.34 274.55 -7.76 -37.10 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.24 Total: -3.42 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.46 Total: -15.79 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.17 Total: -38.93 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.34 -7.76 -37.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055386495.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.598 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds