Wall clock time and date at job start Sun Mar 29 2020 21:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47371 * 2 1 4 4 C 1.53004 * 109.47062 * 240.00465 * 2 1 3 5 5 C 1.52999 * 109.46955 * 299.99738 * 4 2 1 6 6 C 1.52998 * 109.47197 * 300.00017 * 5 4 2 7 7 C 1.53004 * 109.47182 * 60.00122 * 6 5 4 8 8 C 1.52998 * 109.47315 * 120.00311 * 2 1 3 9 9 H 1.09006 * 109.47095 * 179.97438 * 8 2 1 10 10 N 1.46893 * 109.47045 * 299.99856 * 8 2 1 11 11 C 1.46901 * 111.00360 * 303.95182 * 10 8 2 12 12 C 1.46906 * 110.99932 * 179.97438 * 10 8 2 13 13 C 1.50703 * 109.47109 * 190.00029 * 12 10 8 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 12 10 15 15 C 1.37875 * 119.99989 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47454 * 59.99696 * 17 15 13 19 19 H 1.48506 * 109.47297 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46926 * 299.99488 * 17 15 13 21 21 H 1.09000 * 109.46749 * 299.99731 * 1 2 3 22 22 H 1.09003 * 109.47532 * 59.99631 * 1 2 3 23 23 H 1.09000 * 109.47371 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47025 * 59.99594 * 4 2 1 25 25 H 1.08997 * 109.47316 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.47288 * 60.00247 * 5 4 2 27 27 H 1.09000 * 109.47271 * 179.97438 * 5 4 2 28 28 H 1.08998 * 109.47191 * 180.02562 * 6 5 4 29 29 H 1.08997 * 109.47252 * 299.99769 * 6 5 4 30 30 H 1.08993 * 109.47018 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.46921 * 60.00005 * 7 6 5 32 32 H 1.08995 * 109.47046 * 296.04847 * 11 10 8 33 33 H 1.09008 * 109.46903 * 56.04730 * 11 10 8 34 34 H 1.08999 * 109.47457 * 176.04446 * 11 10 8 35 35 H 1.08992 * 109.47459 * 309.99948 * 12 10 8 36 36 H 1.09004 * 109.47040 * 70.00098 * 12 10 8 37 37 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2494 6 6 2.0400 -2.8850 -0.0002 7 6 1.5300 -2.1638 1.2491 8 6 2.0400 -0.7213 1.2492 9 1 3.1301 -0.7217 1.2489 10 7 1.5504 -0.0289 2.4486 11 6 1.9427 1.3867 2.4363 12 6 2.0210 -0.6954 3.6702 13 6 1.3088 -0.1155 4.8651 14 1 0.5792 0.6694 4.7303 15 6 1.5886 -0.5870 6.1301 16 7 2.4766 -1.5431 6.2941 17 14 0.7053 0.1313 7.6111 18 1 -0.7575 -0.0791 7.4651 19 1 1.1810 -0.5424 8.8460 20 1 0.9897 1.5862 7.6994 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6765 -0.2073 -2.1393 25 1 3.1299 -0.7216 -1.2492 26 1 0.4400 -2.1637 -1.2494 27 1 1.8929 -2.6774 -2.1396 28 1 1.6771 -3.9128 -0.0005 29 1 3.1300 -2.8850 -0.0002 30 1 1.8938 -2.6774 2.1390 31 1 0.4400 -2.1639 1.2491 32 1 3.0291 1.4631 2.4793 33 1 1.5813 1.8560 1.5212 34 1 1.5085 1.8916 3.2993 35 1 1.8115 -1.7631 3.6053 36 1 3.0948 -0.5417 3.7774 37 1 2.6732 -1.8750 7.1841 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055386495.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:54 Heat of formation + Delta-G solvation = -35.059539 kcal Electronic energy + Delta-G solvation = -14970.404274 eV Core-core repulsion = 12745.996963 eV Total energy + Delta-G solvation = -2224.407310 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61083 -36.97119 -34.58676 -32.87371 -30.82025 -29.13825 -27.66952 -26.12927 -24.03229 -22.73490 -21.56069 -19.31648 -18.53896 -17.09377 -16.69591 -15.99168 -15.54149 -15.38054 -14.67926 -14.54420 -14.20060 -13.92986 -13.68072 -13.35734 -12.91670 -12.82876 -12.65823 -12.48284 -12.30208 -12.11402 -12.02360 -11.95433 -11.83698 -11.30800 -11.11153 -10.88165 -10.67762 -10.52191 -8.95429 -8.20048 -6.30090 1.39479 1.43165 1.51007 2.39874 3.11762 3.31811 3.79918 3.86480 4.12420 4.35561 4.39590 4.43036 4.54698 4.56782 4.62745 4.70600 4.75007 4.89404 5.01579 5.03439 5.11918 5.14779 5.18136 5.23721 5.26184 5.30285 5.38891 5.48397 5.50612 5.54459 5.66321 5.76878 6.08629 6.39591 6.71131 6.86878 7.39367 8.90915 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048417 B = 0.007947 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.172929 B = 3522.496760 C = 3795.479530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.068 0.932 4 C -0.109 4.109 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.111 4.111 8 C 0.088 3.912 9 H 0.007 0.993 10 N -0.538 5.538 11 C 0.039 3.961 12 C 0.206 3.794 13 C -0.524 4.524 14 H 0.062 0.938 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.268 1.268 21 H 0.044 0.956 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.001 0.999 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.014 0.986 36 H -0.051 1.051 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 1.388 -14.640 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.021 4.021 9 H 0.025 0.975 10 N -0.261 5.261 11 C -0.109 4.109 12 C 0.080 3.920 13 C -0.562 4.562 14 H 0.081 0.919 15 C -0.198 4.198 16 N -0.577 5.577 17 Si 0.794 3.206 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.193 1.193 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.019 0.981 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.032 0.968 36 H -0.033 1.033 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.819 1.265 -14.509 14.835 hybrid contribution 0.962 0.115 1.431 1.728 sum -1.857 1.380 -13.078 13.281 Atomic orbital electron populations 1.21732 0.94197 1.01889 1.01203 1.21167 0.97195 0.98632 0.93026 0.91415 1.21556 1.00212 0.95967 0.96910 1.21556 1.01322 0.95248 0.97037 1.21509 1.00261 0.99156 0.94139 1.21597 1.01186 0.94427 0.97687 1.21672 0.94754 0.94699 0.90946 0.97535 1.62086 1.59617 1.02458 1.01978 1.22249 0.96615 0.89973 1.02077 1.19432 0.90940 0.94211 0.87462 1.21478 1.22723 1.20348 0.91642 0.91949 1.25940 0.96094 0.95483 1.02304 1.70093 1.34829 1.29177 1.23582 0.85430 0.78914 0.78618 0.77609 1.19263 1.20796 1.19256 0.93657 0.91646 0.92586 0.89840 0.92545 0.91193 0.90306 0.91118 0.92773 0.94989 0.91510 0.98083 0.89773 0.92669 0.96804 1.03302 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 8.34 71.98 0.60 -3.02 16 2 C -0.08 -2.31 2.23 -10.79 -0.02 -2.33 16 3 H 0.07 1.89 6.26 -2.39 -0.01 1.87 16 4 C -0.11 -2.41 5.45 30.60 0.17 -2.25 16 5 C -0.11 -2.45 5.65 30.59 0.17 -2.28 16 6 C -0.11 -3.04 5.92 30.60 0.18 -2.86 16 7 C -0.11 -4.00 4.72 30.60 0.14 -3.85 16 8 C 0.09 3.28 1.64 44.92 0.07 3.35 16 9 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 10 N -0.54 -24.12 3.86 -901.61 -3.48 -27.59 16 11 C 0.04 1.58 8.99 127.69 1.15 2.73 16 12 C 0.21 11.46 4.54 85.56 0.39 11.85 16 13 C -0.52 -30.68 8.51 25.60 0.22 -30.46 16 14 H 0.06 3.57 7.10 -2.91 -0.02 3.55 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 16 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 17 Si 0.97 45.31 29.54 68.60 2.03 47.34 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 21 H 0.04 1.44 7.60 -2.39 -0.02 1.43 16 22 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.52 4.81 -2.39 -0.01 1.51 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.46 6.43 -2.39 -0.02 1.45 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.03 1.36 6.20 -2.39 -0.01 1.34 16 31 H 0.07 2.41 6.43 -2.39 -0.02 2.40 16 32 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.08 2.78 6.01 -2.38 -0.01 2.76 16 34 H 0.05 2.38 6.86 -2.39 -0.02 2.36 16 35 H 0.01 0.83 5.83 -2.39 -0.01 0.82 16 36 H -0.05 -3.12 8.12 -2.38 -0.02 -3.14 16 37 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -65.00 274.55 3.39 -61.61 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.02 Total: 5.00 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 3.53 Total: -28.69 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -3.19 Total: -85.26 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -65.00 3.39 -61.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055386495.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.553 kcal (2) G-P(sol) polarization free energy of solvation -64.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds