Wall clock time and date at job start Sun Mar 29 2020 21:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47135 * 2 1 4 4 C 1.52999 * 109.47082 * 120.00629 * 2 1 3 5 5 C 1.53009 * 109.46782 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47053 * 300.00114 * 5 4 2 7 7 C 1.52996 * 109.47644 * 59.99982 * 6 5 4 8 8 C 1.52999 * 109.46606 * 240.00430 * 2 1 3 9 9 H 1.08996 * 109.47537 * 299.99720 * 8 2 1 10 10 N 1.46896 * 109.47705 * 60.00052 * 8 2 1 11 11 C 1.46894 * 111.00737 * 192.89379 * 10 8 2 12 12 C 1.46901 * 110.99967 * 68.93627 * 10 8 2 13 13 C 1.50700 * 109.47242 * 190.00669 * 12 10 8 14 14 H 1.07997 * 119.99860 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00133 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00008 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99920 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47429 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47248 * 120.00103 * 17 15 13 20 20 H 1.48508 * 109.47004 * 239.99808 * 17 15 13 21 21 H 1.09001 * 109.46979 * 294.84808 * 1 2 3 22 22 H 1.08995 * 109.47332 * 54.84932 * 1 2 3 23 23 H 1.09000 * 109.46993 * 174.85246 * 1 2 3 24 24 H 1.08996 * 109.47325 * 60.00118 * 4 2 1 25 25 H 1.08999 * 109.47172 * 299.99481 * 4 2 1 26 26 H 1.09006 * 109.46885 * 60.00122 * 5 4 2 27 27 H 1.09001 * 109.46926 * 179.97438 * 5 4 2 28 28 H 1.09000 * 109.46948 * 180.02562 * 6 5 4 29 29 H 1.09008 * 109.46766 * 299.99685 * 6 5 4 30 30 H 1.08996 * 109.46973 * 59.99668 * 7 6 5 31 31 H 1.08999 * 109.47397 * 180.02562 * 7 6 5 32 32 H 1.09005 * 109.46649 * 54.40159 * 11 10 8 33 33 H 1.08996 * 109.47862 * 174.40311 * 11 10 8 34 34 H 1.09001 * 109.46681 * 294.40958 * 11 10 8 35 35 H 1.08997 * 109.47490 * 310.00227 * 12 10 8 36 36 H 1.09000 * 109.47035 * 70.00450 * 12 10 8 37 37 H 0.97005 * 120.00343 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5701 -0.7219 1.2488 6 6 4.0795 -1.4433 -0.0005 7 6 3.5695 -0.7220 -1.2497 8 6 2.0399 -0.7212 -1.2493 9 1 1.6766 -1.7488 -1.2494 10 7 1.5503 -0.0287 -2.4487 11 6 1.7550 -0.8483 -3.6504 12 6 2.1875 1.2869 -2.5940 13 6 1.4918 2.0647 -3.6812 14 1 0.6598 1.6255 -4.2116 15 6 1.9181 3.3367 -3.9996 16 7 2.9315 3.8714 -3.3542 17 14 1.0562 4.3005 -5.3479 18 1 -0.0446 3.4814 -5.9156 19 1 0.4989 5.5547 -4.7808 20 1 2.0297 4.6315 -6.4194 21 1 -0.3633 0.4318 0.9325 22 1 -0.3634 0.5916 -0.8402 23 1 -0.3633 -1.0235 -0.0922 24 1 1.6767 -1.7490 1.2491 25 1 1.6768 -0.2076 2.1392 26 1 3.9338 0.3057 1.2487 27 1 3.9335 -1.2354 2.1389 28 1 5.1695 -1.4441 -0.0006 29 1 3.7158 -2.4709 -0.0003 30 1 3.9331 0.3055 -1.2498 31 1 3.9321 -1.2363 -2.1397 32 1 1.2982 -1.8272 -3.5047 33 1 1.2954 -0.3570 -4.5080 34 1 2.8233 -0.9690 -3.8302 35 1 2.1137 1.8323 -1.6532 36 1 3.2372 1.1552 -2.8562 37 1 3.2312 4.7664 -3.5779 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055386499.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:56 Heat of formation + Delta-G solvation = -23.821952 kcal Electronic energy + Delta-G solvation = -15041.541772 eV Core-core repulsion = 12817.621760 eV Total energy + Delta-G solvation = -2223.920012 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.05641 -35.17858 -32.43984 -32.08462 -29.17904 -27.21962 -25.87429 -24.29154 -22.55314 -20.86055 -20.31779 -18.55825 -16.34963 -15.13586 -14.60635 -14.15205 -14.10701 -13.86523 -13.50088 -13.10299 -12.53124 -12.27429 -11.94155 -11.80018 -11.44481 -11.20223 -10.95610 -10.91303 -10.81049 -10.63301 -10.50233 -10.22972 -10.11077 -9.82798 -9.63892 -9.51635 -9.03478 -8.37521 -7.05129 -5.98296 -3.98598 3.32809 3.40276 3.45233 4.46291 4.93168 5.08045 5.14553 5.36636 5.42660 5.55686 5.60952 5.85691 5.87946 5.93069 5.96003 6.05402 6.19800 6.22102 6.28101 6.35389 6.42656 6.43982 6.47646 6.60779 6.71697 6.77982 6.82059 7.00602 7.03513 7.41709 7.46309 7.87074 8.18726 8.31065 8.65591 9.09950 9.65259 11.12469 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038780 B = 0.008556 C = 0.008496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.854215 B = 3271.856149 C = 3294.809796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.075 0.925 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.154 4.154 8 C 0.094 3.906 9 H 0.062 0.938 10 N -0.534 5.534 11 C 0.039 3.961 12 C 0.191 3.809 13 C -0.505 4.505 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.899 5.899 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 H 0.038 0.962 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.012 0.988 35 H 0.032 0.968 36 H -0.007 1.007 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -9.293 6.777 11.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.193 4.193 8 C -0.016 4.016 9 H 0.080 0.920 10 N -0.257 5.257 11 C -0.110 4.110 12 C 0.066 3.934 13 C -0.543 4.543 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.212 1.212 21 H 0.057 0.943 22 H 0.091 0.909 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.030 0.970 35 H 0.050 0.950 36 H 0.011 0.989 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.605 -9.048 6.818 11.345 hybrid contribution 0.617 0.524 -0.866 1.186 sum 0.012 -8.523 5.952 10.396 Atomic orbital electron populations 1.21636 0.95010 1.01035 1.01240 1.21120 0.96062 1.00009 0.92934 0.90673 1.21595 0.95107 1.00286 0.97947 1.21536 0.96141 1.00798 0.97206 1.21459 0.99519 0.98910 0.95136 1.22249 0.98484 1.01645 0.96906 1.21637 0.91390 0.96864 0.91689 0.92009 1.62304 1.58124 1.04613 1.00629 1.22177 0.98078 0.95991 0.94760 1.19763 0.92366 0.83917 0.97358 1.21259 1.15659 0.99316 1.18109 0.91989 1.24978 0.95233 0.97677 0.96791 1.69967 1.26459 1.15855 1.41627 0.86494 0.79513 0.79945 0.81779 1.19720 1.21078 1.21218 0.94321 0.90860 0.93935 0.92569 0.92420 0.91982 0.92777 0.92807 0.92699 0.90837 0.92666 0.94032 0.91109 0.96979 0.94967 0.98946 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.96 37.16 0.33 -1.85 16 2 C -0.08 -1.41 2.11 -90.62 -0.19 -1.61 16 3 H 0.07 1.50 6.47 -51.93 -0.34 1.16 16 4 C -0.11 -1.56 5.20 -26.73 -0.14 -1.70 16 5 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 6 C -0.11 -1.59 5.92 -26.74 -0.16 -1.75 16 7 C -0.15 -2.70 4.42 -26.75 -0.12 -2.82 16 8 C 0.09 1.70 1.62 -67.74 -0.11 1.59 16 9 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 10 N -0.53 -11.53 4.01 -236.37 -0.95 -12.48 16 11 C 0.04 0.77 9.06 60.06 0.54 1.31 16 12 C 0.19 4.94 3.57 -4.98 -0.02 4.92 16 13 C -0.50 -14.25 8.54 -34.44 -0.29 -14.55 16 14 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.83 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.07 1.41 7.77 -51.93 -0.40 1.00 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.07 1.49 6.54 -51.93 -0.34 1.15 16 31 H 0.05 0.98 6.92 -51.93 -0.36 0.62 16 32 H 0.04 0.71 7.99 -51.93 -0.41 0.29 16 33 H 0.07 1.49 6.90 -51.93 -0.36 1.13 16 34 H 0.01 0.23 6.96 -51.93 -0.36 -0.13 16 35 H 0.03 0.89 6.23 -51.93 -0.32 0.57 16 36 H -0.01 -0.20 6.82 -51.93 -0.35 -0.55 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 280.03 15.07 4.22 4.22 Total: -1.00 -28.97 280.03 -7.97 -36.94 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -6.55 Total: -2.63 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -0.41 Total: -16.77 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.21 Total: -38.60 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.97 -7.97 -36.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055386499.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.117 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds