Wall clock time and date at job start Sun Mar 29 2020 21:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47152 * 2 1 4 4 C 1.52996 * 109.47169 * 239.99424 * 2 1 3 5 5 C 1.53001 * 109.47269 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47499 * 60.00045 * 5 4 2 7 7 C 1.53005 * 109.46994 * 300.00288 * 6 5 4 8 8 C 1.53004 * 109.46838 * 119.99689 * 2 1 3 9 9 H 1.08998 * 109.46995 * 60.00215 * 8 2 1 10 10 N 1.46903 * 109.47346 * 299.99520 * 8 2 1 11 11 C 1.46893 * 111.00134 * 298.95689 * 10 8 2 12 12 C 1.46895 * 110.99739 * 175.00058 * 10 8 2 13 13 C 1.50702 * 109.46770 * 190.00200 * 12 10 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72214 * 13 12 10 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 H 1.09005 * 109.47014 * 300.00319 * 1 2 3 22 22 H 1.09004 * 109.47017 * 59.99972 * 1 2 3 23 23 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47039 * 60.00410 * 4 2 1 25 25 H 1.08998 * 109.47554 * 300.00330 * 4 2 1 26 26 H 1.08999 * 109.46963 * 299.99913 * 5 4 2 27 27 H 1.09003 * 109.47571 * 180.02562 * 5 4 2 28 28 H 1.08993 * 109.47462 * 180.02562 * 6 5 4 29 29 H 1.08999 * 109.47121 * 59.99964 * 6 5 4 30 30 H 1.08999 * 109.46922 * 299.99798 * 7 6 5 31 31 H 1.08997 * 109.47210 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.47470 * 296.04461 * 11 10 8 33 33 H 1.09011 * 109.47216 * 56.04379 * 11 10 8 34 34 H 1.09000 * 109.46850 * 176.04189 * 11 10 8 35 35 H 1.09004 * 109.47258 * 70.00524 * 12 10 8 36 36 H 1.08994 * 109.47601 * 310.00116 * 12 10 8 37 37 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2496 8 6 2.0399 -0.7212 1.2493 9 1 1.6766 -1.7489 1.2493 10 7 1.5503 -0.0286 2.4488 11 6 2.0417 1.3549 2.4952 12 6 1.9213 -0.7602 3.6673 13 6 1.2021 -0.1638 4.8498 14 1 0.5358 0.6746 4.7100 15 6 1.3899 -0.6925 6.1093 16 7 0.7581 -0.1755 7.1404 17 14 2.5419 -2.1430 6.3511 18 1 3.9136 -1.6451 6.6264 19 1 2.0730 -2.9616 7.4980 20 1 2.5548 -2.9753 5.1213 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6767 -0.2076 -2.1391 25 1 1.6766 -1.7490 -1.2491 26 1 3.9336 0.3056 -1.2487 27 1 3.9334 -1.2355 -2.1390 28 1 5.1695 -1.4434 0.0009 29 1 3.7158 -2.4709 0.0003 30 1 3.9332 0.3055 1.2497 31 1 3.9321 -1.2363 2.1396 32 1 3.1280 1.3519 2.5840 33 1 1.7533 1.8739 1.5809 34 1 1.6083 1.8657 3.3550 35 1 2.9978 -0.6866 3.8219 36 1 1.6402 -1.8080 3.5619 37 1 0.8906 -0.5472 8.0265 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055386503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:57 Heat of formation + Delta-G solvation = -18.612837 kcal Electronic energy + Delta-G solvation = -14979.802271 eV Core-core repulsion = 12756.108143 eV Total energy + Delta-G solvation = -2223.694128 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.29430 -35.35789 -32.54175 -32.17259 -29.43781 -27.62367 -26.15316 -24.58393 -22.41978 -20.89542 -20.12155 -18.86241 -16.86455 -15.23412 -14.74274 -14.39031 -14.20745 -14.06639 -13.66737 -13.19818 -12.65976 -12.45457 -12.23227 -11.95281 -11.67449 -11.32644 -11.18941 -11.11057 -10.78196 -10.75921 -10.68858 -10.24483 -10.11219 -10.02608 -9.80687 -9.52751 -9.22359 -8.54356 -7.21514 -6.02343 -3.98762 3.29457 3.37149 3.39657 4.44453 4.74002 4.87577 4.95981 5.22385 5.30230 5.34877 5.41389 5.67220 5.68162 5.72694 5.77611 5.89321 6.02757 6.08812 6.14395 6.20973 6.26688 6.28919 6.32397 6.41888 6.49530 6.53700 6.75849 6.77955 6.83591 6.94497 7.08679 7.66207 7.99229 8.14671 8.71350 9.06921 9.60100 11.10989 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040420 B = 0.008973 C = 0.008004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.565991 B = 3119.769470 C = 3497.594162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.155 4.155 8 C 0.088 3.912 9 H 0.073 0.927 10 N -0.521 5.521 11 C 0.032 3.968 12 C 0.162 3.838 13 C -0.506 4.506 14 H 0.080 0.920 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.014 0.986 33 H 0.049 0.951 34 H 0.075 0.925 35 H -0.015 1.015 36 H 0.025 0.975 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -1.234 -15.386 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.195 4.195 8 C -0.022 4.022 9 H 0.091 0.909 10 N -0.243 5.243 11 C -0.116 4.116 12 C 0.035 3.965 13 C -0.545 4.545 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.192 1.192 21 H 0.091 0.909 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.002 0.998 36 H 0.043 0.957 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.328 -1.238 -15.187 15.840 hybrid contribution 1.588 -0.854 0.413 1.849 sum 5.916 -2.092 -14.774 16.051 Atomic orbital electron populations 1.21689 0.94697 1.01563 1.01454 1.21161 0.96287 0.99240 0.93475 0.91438 1.21598 0.95098 1.00728 0.97670 1.21528 0.96091 1.00457 0.97449 1.21473 0.99589 0.99387 0.94794 1.22263 0.98642 1.00828 0.97720 1.21746 0.91249 0.98164 0.90995 0.90931 1.62166 1.58289 1.02006 1.01881 1.22298 0.96928 0.91013 1.01400 1.20175 0.93780 0.94309 0.88199 1.21077 1.26603 1.17178 0.89623 0.90176 1.24902 0.95766 0.96748 0.95988 1.69895 1.42971 1.41856 0.99414 0.86880 0.81438 0.83514 0.78025 1.20432 1.21195 1.19184 0.90888 0.94180 0.93310 0.92348 0.92159 0.92326 0.92589 0.92695 0.92251 0.91890 0.91882 0.96773 0.93196 0.90633 0.99751 0.95673 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.04 37.16 0.34 -1.64 16 2 C -0.08 -1.19 1.91 -90.62 -0.17 -1.36 16 3 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 4 C -0.11 -1.35 5.20 -26.73 -0.14 -1.49 16 5 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 6 C -0.11 -1.47 5.92 -26.73 -0.16 -1.63 16 7 C -0.16 -2.47 4.51 -26.75 -0.12 -2.59 16 8 C 0.09 1.51 1.67 -67.73 -0.11 1.39 16 9 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 10 N -0.52 -10.88 3.98 -236.36 -0.94 -11.82 16 11 C 0.03 0.62 8.55 60.06 0.51 1.13 16 12 C 0.16 3.96 3.23 -4.98 -0.02 3.95 16 13 C -0.51 -14.54 9.07 -34.44 -0.31 -14.85 16 14 H 0.08 2.50 7.35 -52.49 -0.39 2.11 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 17 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.07 16 21 H 0.07 1.22 7.60 -51.93 -0.39 0.82 16 22 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.00 6.47 -51.93 -0.34 0.66 16 31 H 0.06 1.11 6.75 -51.93 -0.35 0.76 16 32 H 0.01 0.26 6.51 -51.93 -0.34 -0.07 16 33 H 0.05 0.83 6.13 -51.92 -0.32 0.51 16 34 H 0.07 1.63 6.86 -51.93 -0.36 1.27 16 35 H -0.02 -0.37 6.37 -51.93 -0.33 -0.70 16 36 H 0.03 0.63 7.05 -51.93 -0.37 0.27 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 275.55 15.07 4.15 4.15 Total: -1.00 -29.73 275.55 -7.59 -37.33 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -6.47 Total: -2.95 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -0.44 Total: -16.72 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.17 Total: -38.97 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.73 -7.59 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055386503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.713 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds