Wall clock time and date at job start Sun Mar 29 2020 21:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47152 * 2 1 4 4 C 1.52996 * 109.47169 * 239.99424 * 2 1 3 5 5 C 1.53001 * 109.47269 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47499 * 60.00045 * 5 4 2 7 7 C 1.53005 * 109.46994 * 300.00288 * 6 5 4 8 8 C 1.53004 * 109.46838 * 119.99689 * 2 1 3 9 9 H 1.08998 * 109.46995 * 60.00215 * 8 2 1 10 10 N 1.46903 * 109.47346 * 299.99520 * 8 2 1 11 11 C 1.46893 * 111.00134 * 298.95689 * 10 8 2 12 12 C 1.46895 * 110.99739 * 175.00058 * 10 8 2 13 13 C 1.50702 * 109.46770 * 190.00200 * 12 10 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72214 * 13 12 10 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 H 1.09005 * 109.47014 * 300.00319 * 1 2 3 22 22 H 1.09004 * 109.47017 * 59.99972 * 1 2 3 23 23 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47039 * 60.00410 * 4 2 1 25 25 H 1.08998 * 109.47554 * 300.00330 * 4 2 1 26 26 H 1.08999 * 109.46963 * 299.99913 * 5 4 2 27 27 H 1.09003 * 109.47571 * 180.02562 * 5 4 2 28 28 H 1.08993 * 109.47462 * 180.02562 * 6 5 4 29 29 H 1.08999 * 109.47121 * 59.99964 * 6 5 4 30 30 H 1.08999 * 109.46922 * 299.99798 * 7 6 5 31 31 H 1.08997 * 109.47210 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.47470 * 296.04461 * 11 10 8 33 33 H 1.09011 * 109.47216 * 56.04379 * 11 10 8 34 34 H 1.09000 * 109.46850 * 176.04189 * 11 10 8 35 35 H 1.09004 * 109.47258 * 70.00524 * 12 10 8 36 36 H 1.08994 * 109.47601 * 310.00116 * 12 10 8 37 37 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2496 8 6 2.0399 -0.7212 1.2493 9 1 1.6766 -1.7489 1.2493 10 7 1.5503 -0.0286 2.4488 11 6 2.0417 1.3549 2.4952 12 6 1.9213 -0.7602 3.6673 13 6 1.2021 -0.1638 4.8498 14 1 0.5358 0.6746 4.7100 15 6 1.3899 -0.6925 6.1093 16 7 0.7581 -0.1755 7.1404 17 14 2.5419 -2.1430 6.3511 18 1 3.9136 -1.6451 6.6264 19 1 2.0730 -2.9616 7.4980 20 1 2.5548 -2.9753 5.1213 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6767 -0.2076 -2.1391 25 1 1.6766 -1.7490 -1.2491 26 1 3.9336 0.3056 -1.2487 27 1 3.9334 -1.2355 -2.1390 28 1 5.1695 -1.4434 0.0009 29 1 3.7158 -2.4709 0.0003 30 1 3.9332 0.3055 1.2497 31 1 3.9321 -1.2363 2.1396 32 1 3.1280 1.3519 2.5840 33 1 1.7533 1.8739 1.5809 34 1 1.6083 1.8657 3.3550 35 1 2.9978 -0.6866 3.8219 36 1 1.6402 -1.8080 3.5619 37 1 0.8906 -0.5472 8.0265 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055386503.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:57 Heat of formation + Delta-G solvation = -37.133685 kcal Electronic energy + Delta-G solvation = -14980.605395 eV Core-core repulsion = 12756.108143 eV Total energy + Delta-G solvation = -2224.497252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60082 -36.85000 -34.56976 -33.42582 -30.89038 -29.42438 -27.45862 -26.13393 -23.97423 -22.07430 -21.56570 -20.17062 -19.01709 -16.68597 -16.56123 -15.87026 -15.45709 -15.38583 -15.05953 -14.77032 -14.32590 -13.93409 -13.72372 -13.31652 -13.00962 -12.81063 -12.73785 -12.53731 -12.40305 -12.14552 -11.97261 -11.82816 -11.61250 -11.41863 -11.20671 -11.15015 -10.84628 -10.74949 -8.86459 -8.29514 -6.32016 1.31110 1.33172 1.44195 2.32482 3.03346 3.29324 3.74558 3.89102 4.09836 4.25237 4.28141 4.46708 4.52655 4.58263 4.63613 4.65896 4.71598 4.87108 4.87266 4.93313 5.03039 5.10136 5.13154 5.20046 5.24847 5.28073 5.34320 5.38481 5.47007 5.54695 5.60280 5.66965 6.03219 6.43053 6.71131 6.75167 7.31602 8.87283 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040420 B = 0.008973 C = 0.008004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.565991 B = 3119.769470 C = 3497.594162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 H 0.068 0.932 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.111 4.111 7 C -0.152 4.152 8 C 0.086 3.914 9 H 0.062 0.938 10 N -0.537 5.537 11 C 0.040 3.960 12 C 0.175 3.825 13 C -0.515 4.515 14 H 0.038 0.962 15 C 0.008 3.992 16 N -0.948 5.948 17 Si 0.945 3.055 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.252 1.252 21 H 0.043 0.957 22 H 0.064 0.936 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.019 0.981 33 H 0.079 0.921 34 H 0.042 0.958 35 H -0.014 1.014 36 H 0.021 0.979 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.433 -2.332 -17.814 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 H 0.087 0.913 4 C -0.146 4.146 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.191 4.191 8 C -0.023 4.023 9 H 0.081 0.919 10 N -0.259 5.259 11 C -0.108 4.108 12 C 0.048 3.952 13 C -0.553 4.553 14 H 0.056 0.944 15 C -0.190 4.190 16 N -0.589 5.589 17 Si 0.768 3.232 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.176 1.176 21 H 0.062 0.938 22 H 0.083 0.917 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.004 0.996 36 H 0.039 0.961 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.873 -2.330 -17.645 18.742 hybrid contribution 1.026 -0.429 1.147 1.598 sum 6.899 -2.759 -16.498 18.094 Atomic orbital electron populations 1.21652 0.94955 1.01346 1.01194 1.21147 0.96028 0.99251 0.93254 0.91323 1.21573 0.95611 1.00657 0.96745 1.21522 0.95446 1.00775 0.97406 1.21462 1.00395 0.99170 0.93839 1.22202 0.97351 1.00990 0.98601 1.21856 0.92424 0.97593 0.90407 0.91931 1.62051 1.59351 1.02585 1.01950 1.22204 0.96904 0.90294 1.01414 1.19872 0.92970 0.93947 0.88403 1.21318 1.26164 1.16179 0.91673 0.94382 1.25833 0.97609 0.99995 0.95520 1.70048 1.44927 1.43827 1.00110 0.85748 0.79155 0.79666 0.78590 1.19308 1.20487 1.17560 0.93829 0.91730 0.93529 0.90282 0.92003 0.91964 0.90290 0.91387 0.92110 0.91954 0.94124 0.96226 0.90291 0.93922 0.99644 0.96116 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.04 71.98 0.65 -3.01 16 2 C -0.08 -2.06 1.91 -10.80 -0.02 -2.08 16 3 H 0.07 1.81 6.34 -2.39 -0.02 1.79 16 4 C -0.11 -2.17 5.20 30.59 0.16 -2.02 16 5 C -0.11 -2.13 5.92 30.59 0.18 -1.95 16 6 C -0.11 -2.49 5.92 30.59 0.18 -2.31 16 7 C -0.15 -4.57 4.51 30.58 0.14 -4.43 16 8 C 0.09 2.84 1.67 44.90 0.07 2.92 16 9 H 0.06 2.19 8.03 -2.39 -0.02 2.17 16 10 N -0.54 -22.58 3.98 -901.70 -3.58 -26.17 16 11 C 0.04 1.56 8.55 127.69 1.09 2.65 16 12 C 0.18 8.68 3.23 85.56 0.28 8.95 16 13 C -0.51 -30.62 9.07 25.60 0.23 -30.39 16 14 H 0.04 2.52 7.35 -2.91 -0.02 2.49 16 15 C 0.01 0.45 5.47 84.66 0.46 0.91 16 16 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 17 Si 0.94 45.21 27.47 68.60 1.88 47.10 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 21 H 0.04 1.44 7.60 -2.38 -0.02 1.42 16 22 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.86 6.47 -2.39 -0.02 1.84 16 31 H 0.04 1.38 6.75 -2.39 -0.02 1.37 16 32 H 0.02 0.73 6.51 -2.39 -0.02 0.71 16 33 H 0.08 2.58 6.13 -2.38 -0.01 2.56 16 34 H 0.04 1.92 6.86 -2.39 -0.02 1.90 16 35 H -0.01 -0.69 6.37 -2.38 -0.02 -0.70 16 36 H 0.02 1.04 7.05 -2.39 -0.02 1.02 16 37 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -65.72 275.55 2.98 -62.74 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 0.95 Total: 7.21 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.43 Total: -30.76 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -3.29 Total: -86.29 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.88 Total: 47.10 kcal Total: -65.72 2.98 -62.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055386503.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.605 kcal (2) G-P(sol) polarization free energy of solvation -65.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds