Wall clock time and date at job start Sun Mar 29 2020 21:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47160 * 2 1 4 4 C 1.53000 * 109.47236 * 120.00206 * 2 1 3 5 5 C 1.52994 * 109.47197 * 60.00036 * 4 2 1 6 6 C 1.53003 * 109.47263 * 59.99862 * 5 4 2 7 7 C 1.53000 * 109.47126 * 300.00181 * 6 5 4 8 8 C 1.52995 * 109.47093 * 240.00306 * 2 1 3 9 9 H 1.09003 * 109.47619 * 179.97438 * 8 2 1 10 10 N 1.46904 * 109.47545 * 59.99809 * 8 2 1 11 11 C 1.46894 * 111.00290 * 189.06830 * 10 8 2 12 12 C 1.46899 * 110.99964 * 65.11007 * 10 8 2 13 13 C 1.50701 * 109.47359 * 190.00467 * 12 10 8 14 14 H 1.07997 * 119.99701 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99799 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99356 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00187 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47372 * 89.99979 * 17 15 13 19 19 H 1.48502 * 109.47130 * 210.00137 * 17 15 13 20 20 H 1.48502 * 109.47066 * 329.99818 * 17 15 13 21 21 H 1.08994 * 109.47627 * 180.86462 * 1 2 3 22 22 H 1.09002 * 109.47141 * 300.86355 * 1 2 3 23 23 H 1.09002 * 109.47098 * 60.85759 * 1 2 3 24 24 H 1.09005 * 109.46957 * 180.02562 * 4 2 1 25 25 H 1.09007 * 109.46885 * 299.99725 * 4 2 1 26 26 H 1.08998 * 109.47187 * 180.02562 * 5 4 2 27 27 H 1.09005 * 109.47225 * 299.99907 * 5 4 2 28 28 H 1.08993 * 109.46690 * 60.00239 * 6 5 4 29 29 H 1.08996 * 109.46795 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.46896 * 300.00251 * 7 6 5 31 31 H 1.08996 * 109.47278 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47098 * 66.31753 * 11 10 8 33 33 H 1.09004 * 109.46873 * 186.32128 * 11 10 8 34 34 H 1.09004 * 109.46914 * 306.31676 * 11 10 8 35 35 H 1.09007 * 109.47029 * 310.00731 * 12 10 8 36 36 H 1.09006 * 109.47122 * 70.00282 * 12 10 8 37 37 H 0.97000 * 119.99223 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1637 -1.2493 8 6 2.0399 -0.7212 -1.2492 9 1 3.1300 -0.7208 -1.2496 10 7 1.5503 -0.0287 -2.4487 11 6 1.8367 -0.8081 -3.6604 12 6 2.1184 1.3225 -2.5453 13 6 1.4150 2.0864 -3.6375 14 1 0.6253 1.6150 -4.2036 15 6 1.7806 3.3866 -3.9147 16 7 1.1670 4.0530 -4.8683 17 14 3.1481 4.2011 -2.9371 18 1 4.4501 3.9547 -3.6072 19 1 2.8993 5.6632 -2.8613 20 1 3.1819 3.6330 -1.5654 21 1 -0.3634 -1.0275 0.0155 22 1 -0.3633 0.5272 0.8822 23 1 -0.3633 0.5005 -0.8976 24 1 3.1300 -0.7209 1.2494 25 1 1.6767 -0.2074 2.1392 26 1 1.8930 -2.6775 2.1393 27 1 0.4400 -2.1638 1.2492 28 1 3.1299 -2.8850 -0.0001 29 1 1.6770 -3.9127 0.0002 30 1 0.4399 -2.1637 -1.2492 31 1 1.8929 -2.6777 -2.1393 32 1 1.2571 -1.7311 -3.6442 33 1 1.5660 -0.2244 -4.5403 34 1 2.8996 -1.0471 -3.6959 35 1 1.9858 1.8412 -1.5958 36 1 3.1815 1.2540 -2.7765 37 1 1.4245 4.9676 -5.0635 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055386507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:59 Heat of formation + Delta-G solvation = -14.650433 kcal Electronic energy + Delta-G solvation = -15054.701396 eV Core-core repulsion = 12831.179091 eV Total energy + Delta-G solvation = -2223.522305 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.31695 -35.48884 -32.42452 -31.71234 -29.65790 -27.60990 -26.28308 -24.68575 -22.07110 -21.43725 -19.99766 -18.06053 -16.90980 -15.65765 -14.86885 -14.48856 -14.27617 -13.80094 -13.41711 -12.93642 -12.74333 -12.46527 -12.39064 -11.98907 -11.56860 -11.36353 -11.22194 -10.94452 -10.76821 -10.67671 -10.62762 -10.38870 -10.03947 -9.82674 -9.67676 -9.42377 -9.16139 -8.53912 -7.27012 -6.02580 -3.98781 3.29485 3.37143 3.39610 4.44364 4.70962 4.94296 4.96478 5.22465 5.31143 5.47129 5.59110 5.64086 5.69017 5.74194 5.84620 5.95971 6.09747 6.12582 6.17891 6.22609 6.27603 6.34385 6.36123 6.39002 6.62817 6.65254 6.74471 6.82109 6.94804 7.03214 7.07732 7.67443 7.99871 8.15195 8.71220 9.06652 9.59995 11.10706 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041183 B = 0.009134 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.729888 B = 3064.598876 C = 3335.948456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.116 4.116 8 C 0.089 3.911 9 H 0.025 0.975 10 N -0.524 5.524 11 C 0.034 3.966 12 C 0.159 3.841 13 C -0.506 4.506 14 H 0.081 0.919 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.874 3.126 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.267 1.267 21 H 0.050 0.950 22 H 0.038 0.962 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.007 0.993 35 H 0.032 0.968 36 H -0.021 1.021 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -11.413 10.600 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.153 4.153 8 C -0.020 4.020 9 H 0.043 0.957 10 N -0.248 5.248 11 C -0.115 4.115 12 C 0.033 3.967 13 C -0.544 4.544 14 H 0.099 0.901 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.701 3.299 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.192 1.192 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.026 0.974 35 H 0.050 0.950 36 H -0.003 1.003 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.414 -11.179 10.539 15.428 hybrid contribution 1.743 0.553 0.335 1.859 sum 3.156 -10.625 10.873 15.527 Atomic orbital electron populations 1.21769 0.94621 1.01125 1.01936 1.21115 0.97053 0.99169 0.93020 0.91114 1.21578 1.00080 0.95574 0.97947 1.21559 1.01136 0.95746 0.97206 1.21513 1.00371 0.98455 0.95096 1.21691 1.01773 0.94931 0.96947 1.21571 0.95703 0.93123 0.91601 0.95663 1.61972 1.59075 1.03259 1.00487 1.22290 0.96930 0.97487 0.94777 1.20228 0.92441 0.86027 0.98011 1.21061 1.19701 0.97162 1.16468 0.90139 1.24896 0.96324 0.97141 0.95022 1.69899 1.41992 1.11169 1.31046 0.86884 0.82850 0.78859 0.81294 1.20454 1.21186 1.19191 0.93076 0.94316 0.90528 0.92627 0.92267 0.92808 0.91583 0.92563 0.92425 0.90898 0.92225 0.93083 0.90199 0.97436 0.95020 1.00291 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.35 37.16 0.31 -1.89 16 2 C -0.08 -1.39 2.51 -90.62 -0.23 -1.62 16 3 H 0.07 1.31 6.33 -51.93 -0.33 0.99 16 4 C -0.11 -1.51 5.45 -26.73 -0.15 -1.65 16 5 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16 6 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 7 C -0.12 -1.68 4.39 -26.73 -0.12 -1.80 16 8 C 0.09 1.56 1.63 -67.71 -0.11 1.45 16 9 H 0.03 0.47 8.13 -51.93 -0.42 0.04 16 10 N -0.52 -11.04 3.84 -236.32 -0.91 -11.95 16 11 C 0.03 0.66 8.62 60.06 0.52 1.17 16 12 C 0.16 3.92 3.65 -4.98 -0.02 3.90 16 13 C -0.51 -14.47 8.92 -34.44 -0.31 -14.78 16 14 H 0.08 2.50 7.43 -52.49 -0.39 2.11 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 17 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 H 0.05 0.74 4.81 -51.93 -0.25 0.49 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.77 6.41 -51.93 -0.33 0.44 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.08 6.45 -51.93 -0.33 0.75 16 31 H 0.06 0.85 6.45 -51.93 -0.34 0.52 16 32 H 0.05 0.86 6.61 -51.93 -0.34 0.52 16 33 H 0.08 1.74 6.64 -51.93 -0.34 1.40 16 34 H 0.01 0.14 8.12 -51.93 -0.42 -0.29 16 35 H 0.03 0.79 5.10 -51.92 -0.26 0.53 16 36 H -0.02 -0.52 7.55 -51.93 -0.39 -0.91 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 271.35 15.07 4.09 4.09 Total: -1.00 -29.72 271.35 -7.47 -37.20 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -6.26 Total: -2.99 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.51 Total: -16.45 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.13 Total: -39.01 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.72 -7.47 -37.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055386507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.545 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds