Wall clock time and date at job start Sun Mar 29 2020 21:33:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09004 * 109.47160 * 2 1
4 4 C 1.53000 * 109.47236 * 120.00206 * 2 1 3
5 5 C 1.52994 * 109.47197 * 60.00036 * 4 2 1
6 6 C 1.53003 * 109.47263 * 59.99862 * 5 4 2
7 7 C 1.53000 * 109.47126 * 300.00181 * 6 5 4
8 8 C 1.52995 * 109.47093 * 240.00306 * 2 1 3
9 9 H 1.09003 * 109.47619 * 179.97438 * 8 2 1
10 10 N 1.46904 * 109.47545 * 59.99809 * 8 2 1
11 11 C 1.46894 * 111.00290 * 189.06830 * 10 8 2
12 12 C 1.46899 * 110.99964 * 65.11007 * 10 8 2
13 13 C 1.50701 * 109.47359 * 190.00467 * 12 10 8
14 14 H 1.07997 * 119.99701 * 359.97438 * 13 12 10
15 15 C 1.37880 * 119.99799 * 180.02562 * 13 12 10
16 16 N 1.31516 * 119.99356 * 179.97438 * 15 13 12
17 17 Si 1.86795 * 120.00187 * 0.02562 * 15 13 12
18 18 H 1.48494 * 109.47372 * 89.99979 * 17 15 13
19 19 H 1.48502 * 109.47130 * 210.00137 * 17 15 13
20 20 H 1.48502 * 109.47066 * 329.99818 * 17 15 13
21 21 H 1.08994 * 109.47627 * 180.86462 * 1 2 3
22 22 H 1.09002 * 109.47141 * 300.86355 * 1 2 3
23 23 H 1.09002 * 109.47098 * 60.85759 * 1 2 3
24 24 H 1.09005 * 109.46957 * 180.02562 * 4 2 1
25 25 H 1.09007 * 109.46885 * 299.99725 * 4 2 1
26 26 H 1.08998 * 109.47187 * 180.02562 * 5 4 2
27 27 H 1.09005 * 109.47225 * 299.99907 * 5 4 2
28 28 H 1.08993 * 109.46690 * 60.00239 * 6 5 4
29 29 H 1.08996 * 109.46795 * 179.97438 * 6 5 4
30 30 H 1.09003 * 109.46896 * 300.00251 * 7 6 5
31 31 H 1.08996 * 109.47278 * 180.02562 * 7 6 5
32 32 H 1.09000 * 109.47098 * 66.31753 * 11 10 8
33 33 H 1.09004 * 109.46873 * 186.32128 * 11 10 8
34 34 H 1.09004 * 109.46914 * 306.31676 * 11 10 8
35 35 H 1.09007 * 109.47029 * 310.00731 * 12 10 8
36 36 H 1.09006 * 109.47122 * 70.00282 * 12 10 8
37 37 H 0.97000 * 119.99223 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.5300 -2.1637 1.2492
6 6 2.0400 -2.8850 -0.0001
7 6 1.5300 -2.1637 -1.2493
8 6 2.0399 -0.7212 -1.2492
9 1 3.1300 -0.7208 -1.2496
10 7 1.5503 -0.0287 -2.4487
11 6 1.8367 -0.8081 -3.6604
12 6 2.1184 1.3225 -2.5453
13 6 1.4150 2.0864 -3.6375
14 1 0.6253 1.6150 -4.2036
15 6 1.7806 3.3866 -3.9147
16 7 1.1670 4.0530 -4.8683
17 14 3.1481 4.2011 -2.9371
18 1 4.4501 3.9547 -3.6072
19 1 2.8993 5.6632 -2.8613
20 1 3.1819 3.6330 -1.5654
21 1 -0.3634 -1.0275 0.0155
22 1 -0.3633 0.5272 0.8822
23 1 -0.3633 0.5005 -0.8976
24 1 3.1300 -0.7209 1.2494
25 1 1.6767 -0.2074 2.1392
26 1 1.8930 -2.6775 2.1393
27 1 0.4400 -2.1638 1.2492
28 1 3.1299 -2.8850 -0.0001
29 1 1.6770 -3.9127 0.0002
30 1 0.4399 -2.1637 -1.2492
31 1 1.8929 -2.6777 -2.1393
32 1 1.2571 -1.7311 -3.6442
33 1 1.5660 -0.2244 -4.5403
34 1 2.8996 -1.0471 -3.6959
35 1 1.9858 1.8412 -1.5958
36 1 3.1815 1.2540 -2.7765
37 1 1.4245 4.9676 -5.0635
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000055386507.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:33:59
Heat of formation + Delta-G solvation = -14.650433 kcal
Electronic energy + Delta-G solvation = -15054.701396 eV
Core-core repulsion = 12831.179091 eV
Total energy + Delta-G solvation = -2223.522305 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 211.163 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-39.31695 -35.48884 -32.42452 -31.71234 -29.65790 -27.60990 -26.28308 -24.68575
-22.07110 -21.43725 -19.99766 -18.06053 -16.90980 -15.65765 -14.86885 -14.48856
-14.27617 -13.80094 -13.41711 -12.93642 -12.74333 -12.46527 -12.39064 -11.98907
-11.56860 -11.36353 -11.22194 -10.94452 -10.76821 -10.67671 -10.62762 -10.38870
-10.03947 -9.82674 -9.67676 -9.42377 -9.16139 -8.53912 -7.27012 -6.02580
-3.98781 3.29485 3.37143 3.39610 4.44364 4.70962 4.94296 4.96478
5.22465 5.31143 5.47129 5.59110 5.64086 5.69017 5.74194 5.84620
5.95971 6.09747 6.12582 6.17891 6.22609 6.27603 6.34385 6.36123
6.39002 6.62817 6.65254 6.74471 6.82109 6.94804 7.03214 7.07732
7.67443 7.99871 8.15195 8.71220 9.06652 9.59995 11.10706
Molecular weight = 211.16amu
Principal moments of inertia in cm(-1)
A = 0.041183 B = 0.009134 C = 0.008391
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 679.729888 B = 3064.598876 C = 3335.948456
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.085 4.085
3 H 0.071 0.929
4 C -0.114 4.114
5 C -0.119 4.119
6 C -0.116 4.116
7 C -0.116 4.116
8 C 0.089 3.911
9 H 0.025 0.975
10 N -0.524 5.524
11 C 0.034 3.966
12 C 0.159 3.841
13 C -0.506 4.506
14 H 0.081 0.919
15 C 0.067 3.933
16 N -0.902 5.902
17 Si 0.874 3.126
18 H -0.279 1.279
19 H -0.286 1.286
20 H -0.267 1.267
21 H 0.050 0.950
22 H 0.038 0.962
23 H 0.076 0.924
24 H 0.055 0.945
25 H 0.059 0.941
26 H 0.053 0.947
27 H 0.066 0.934
28 H 0.056 0.944
29 H 0.057 0.943
30 H 0.072 0.928
31 H 0.059 0.941
32 H 0.050 0.950
33 H 0.079 0.921
34 H 0.007 0.993
35 H 0.032 0.968
36 H -0.021 1.021
37 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.929 -11.413 10.600 15.695
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.104 4.104
3 H 0.089 0.911
4 C -0.152 4.152
5 C -0.156 4.156
6 C -0.154 4.154
7 C -0.153 4.153
8 C -0.020 4.020
9 H 0.043 0.957
10 N -0.248 5.248
11 C -0.115 4.115
12 C 0.033 3.967
13 C -0.544 4.544
14 H 0.099 0.901
15 C -0.134 4.134
16 N -0.541 5.541
17 Si 0.701 3.299
18 H -0.205 1.205
19 H -0.212 1.212
20 H -0.192 1.192
21 H 0.069 0.931
22 H 0.057 0.943
23 H 0.095 0.905
24 H 0.074 0.926
25 H 0.077 0.923
26 H 0.072 0.928
27 H 0.084 0.916
28 H 0.074 0.926
29 H 0.076 0.924
30 H 0.091 0.909
31 H 0.078 0.922
32 H 0.069 0.931
33 H 0.098 0.902
34 H 0.026 0.974
35 H 0.050 0.950
36 H -0.003 1.003
37 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 1.414 -11.179 10.539 15.428
hybrid contribution 1.743 0.553 0.335 1.859
sum 3.156 -10.625 10.873 15.527
Atomic orbital electron populations
1.21769 0.94621 1.01125 1.01936 1.21115 0.97053 0.99169 0.93020
0.91114 1.21578 1.00080 0.95574 0.97947 1.21559 1.01136 0.95746
0.97206 1.21513 1.00371 0.98455 0.95096 1.21691 1.01773 0.94931
0.96947 1.21571 0.95703 0.93123 0.91601 0.95663 1.61972 1.59075
1.03259 1.00487 1.22290 0.96930 0.97487 0.94777 1.20228 0.92441
0.86027 0.98011 1.21061 1.19701 0.97162 1.16468 0.90139 1.24896
0.96324 0.97141 0.95022 1.69899 1.41992 1.11169 1.31046 0.86884
0.82850 0.78859 0.81294 1.20454 1.21186 1.19191 0.93076 0.94316
0.90528 0.92627 0.92267 0.92808 0.91583 0.92563 0.92425 0.90898
0.92225 0.93083 0.90199 0.97436 0.95020 1.00291 0.92745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.20 8.35 37.16 0.31 -1.89 16
2 C -0.08 -1.39 2.51 -90.62 -0.23 -1.62 16
3 H 0.07 1.31 6.33 -51.93 -0.33 0.99 16
4 C -0.11 -1.51 5.45 -26.73 -0.15 -1.65 16
5 C -0.12 -1.39 5.65 -26.73 -0.15 -1.54 16
6 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16
7 C -0.12 -1.68 4.39 -26.73 -0.12 -1.80 16
8 C 0.09 1.56 1.63 -67.71 -0.11 1.45 16
9 H 0.03 0.47 8.13 -51.93 -0.42 0.04 16
10 N -0.52 -11.04 3.84 -236.32 -0.91 -11.95 16
11 C 0.03 0.66 8.62 60.06 0.52 1.17 16
12 C 0.16 3.92 3.65 -4.98 -0.02 3.90 16
13 C -0.51 -14.47 8.92 -34.44 -0.31 -14.78 16
14 H 0.08 2.50 7.43 -52.49 -0.39 2.11 16
15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16
16 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16
17 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16
18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16
21 H 0.05 0.74 4.81 -51.93 -0.25 0.49 16
22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
23 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16
24 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16
25 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16
26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
27 H 0.07 0.77 6.41 -51.93 -0.33 0.44 16
28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.07 1.08 6.45 -51.93 -0.33 0.75 16
31 H 0.06 0.85 6.45 -51.93 -0.34 0.52 16
32 H 0.05 0.86 6.61 -51.93 -0.34 0.52 16
33 H 0.08 1.74 6.64 -51.93 -0.34 1.40 16
34 H 0.01 0.14 8.12 -51.93 -0.42 -0.29 16
35 H 0.03 0.79 5.10 -51.92 -0.26 0.53 16
36 H -0.02 -0.52 7.55 -51.93 -0.39 -0.91 16
37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
LS Contribution 271.35 15.07 4.09 4.09
Total: -1.00 -29.72 271.35 -7.47 -37.20
By element:
Atomic # 1 Polarization: 3.26 SS G_CDS: -6.26 Total: -2.99 kcal
Atomic # 6 Polarization: -15.94 SS G_CDS: -0.51 Total: -16.45 kcal
Atomic # 7 Polarization: -38.88 SS G_CDS: -0.13 Total: -39.01 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -29.72 -7.47 -37.20 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000055386507.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.545 kcal
(2) G-P(sol) polarization free energy of solvation -29.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.176 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds