Wall clock time and date at job start Sun Mar 29 2020 21:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47160 * 2 1 4 4 C 1.53000 * 109.47236 * 120.00206 * 2 1 3 5 5 C 1.52994 * 109.47197 * 60.00036 * 4 2 1 6 6 C 1.53003 * 109.47263 * 59.99862 * 5 4 2 7 7 C 1.53000 * 109.47126 * 300.00181 * 6 5 4 8 8 C 1.52995 * 109.47093 * 240.00306 * 2 1 3 9 9 H 1.09003 * 109.47619 * 179.97438 * 8 2 1 10 10 N 1.46904 * 109.47545 * 59.99809 * 8 2 1 11 11 C 1.46894 * 111.00290 * 189.06830 * 10 8 2 12 12 C 1.46899 * 110.99964 * 65.11007 * 10 8 2 13 13 C 1.50701 * 109.47359 * 190.00467 * 12 10 8 14 14 H 1.07997 * 119.99701 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99799 * 180.02562 * 13 12 10 16 16 N 1.31516 * 119.99356 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00187 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47372 * 89.99979 * 17 15 13 19 19 H 1.48502 * 109.47130 * 210.00137 * 17 15 13 20 20 H 1.48502 * 109.47066 * 329.99818 * 17 15 13 21 21 H 1.08994 * 109.47627 * 180.86462 * 1 2 3 22 22 H 1.09002 * 109.47141 * 300.86355 * 1 2 3 23 23 H 1.09002 * 109.47098 * 60.85759 * 1 2 3 24 24 H 1.09005 * 109.46957 * 180.02562 * 4 2 1 25 25 H 1.09007 * 109.46885 * 299.99725 * 4 2 1 26 26 H 1.08998 * 109.47187 * 180.02562 * 5 4 2 27 27 H 1.09005 * 109.47225 * 299.99907 * 5 4 2 28 28 H 1.08993 * 109.46690 * 60.00239 * 6 5 4 29 29 H 1.08996 * 109.46795 * 179.97438 * 6 5 4 30 30 H 1.09003 * 109.46896 * 300.00251 * 7 6 5 31 31 H 1.08996 * 109.47278 * 180.02562 * 7 6 5 32 32 H 1.09000 * 109.47098 * 66.31753 * 11 10 8 33 33 H 1.09004 * 109.46873 * 186.32128 * 11 10 8 34 34 H 1.09004 * 109.46914 * 306.31676 * 11 10 8 35 35 H 1.09007 * 109.47029 * 310.00731 * 12 10 8 36 36 H 1.09006 * 109.47122 * 70.00282 * 12 10 8 37 37 H 0.97000 * 119.99223 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1637 1.2492 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1637 -1.2493 8 6 2.0399 -0.7212 -1.2492 9 1 3.1300 -0.7208 -1.2496 10 7 1.5503 -0.0287 -2.4487 11 6 1.8367 -0.8081 -3.6604 12 6 2.1184 1.3225 -2.5453 13 6 1.4150 2.0864 -3.6375 14 1 0.6253 1.6150 -4.2036 15 6 1.7806 3.3866 -3.9147 16 7 1.1670 4.0530 -4.8683 17 14 3.1481 4.2011 -2.9371 18 1 4.4501 3.9547 -3.6072 19 1 2.8993 5.6632 -2.8613 20 1 3.1819 3.6330 -1.5654 21 1 -0.3634 -1.0275 0.0155 22 1 -0.3633 0.5272 0.8822 23 1 -0.3633 0.5005 -0.8976 24 1 3.1300 -0.7209 1.2494 25 1 1.6767 -0.2074 2.1392 26 1 1.8930 -2.6775 2.1393 27 1 0.4400 -2.1638 1.2492 28 1 3.1299 -2.8850 -0.0001 29 1 1.6770 -3.9127 0.0002 30 1 0.4399 -2.1637 -1.2492 31 1 1.8929 -2.6777 -2.1393 32 1 1.2571 -1.7311 -3.6442 33 1 1.5660 -0.2244 -4.5403 34 1 2.8996 -1.0471 -3.6959 35 1 1.9858 1.8412 -1.5958 36 1 3.1815 1.2540 -2.7765 37 1 1.4245 4.9676 -5.0635 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055386507.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:58 Heat of formation + Delta-G solvation = -33.210953 kcal Electronic energy + Delta-G solvation = -15055.506241 eV Core-core repulsion = 12831.179091 eV Total energy + Delta-G solvation = -2224.327150 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.62078 -37.03316 -34.58260 -32.87898 -31.12045 -29.37207 -27.65149 -26.29805 -23.57625 -22.71832 -21.52236 -19.38730 -18.96571 -17.05890 -16.57075 -16.17152 -15.63743 -15.31301 -14.72151 -14.44553 -14.33977 -14.15162 -13.66705 -13.39038 -13.23188 -12.93563 -12.64964 -12.40887 -12.19167 -12.07862 -12.06244 -11.83173 -11.78668 -11.40820 -11.12968 -10.89967 -10.81168 -10.62495 -8.96038 -8.29711 -6.31679 1.30504 1.32295 1.43329 2.32039 3.02957 3.23570 3.79865 3.87091 4.12445 4.35739 4.38896 4.43114 4.53029 4.55960 4.61669 4.65239 4.72304 4.86236 4.89880 4.97351 5.04631 5.11647 5.13663 5.21110 5.23519 5.30287 5.31505 5.45150 5.48334 5.57539 5.58999 5.74385 6.04032 6.42878 6.70335 6.74907 7.31564 8.87016 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.041183 B = 0.009134 C = 0.008391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.729888 B = 3064.598876 C = 3335.948456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 H 0.042 0.958 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.112 4.112 7 C -0.111 4.111 8 C 0.086 3.914 9 H 0.019 0.981 10 N -0.538 5.538 11 C 0.038 3.962 12 C 0.173 3.827 13 C -0.512 4.512 14 H 0.039 0.961 15 C 0.009 3.991 16 N -0.947 5.947 17 Si 0.943 3.057 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.252 1.252 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.037 0.963 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.031 0.969 36 H -0.025 1.025 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 -12.962 13.006 18.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.107 4.107 3 H 0.061 0.939 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.150 4.150 7 C -0.148 4.148 8 C -0.022 4.022 9 H 0.037 0.963 10 N -0.261 5.261 11 C -0.110 4.110 12 C 0.045 3.955 13 C -0.550 4.550 14 H 0.057 0.943 15 C -0.189 4.189 16 N -0.588 5.588 17 Si 0.766 3.234 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.176 1.176 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.049 0.951 36 H -0.007 1.007 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.499 -12.754 12.954 18.350 hybrid contribution 1.325 0.984 -0.471 1.717 sum 3.824 -11.770 12.483 17.578 Atomic orbital electron populations 1.21689 0.94474 1.01949 1.00658 1.21139 0.97172 0.98043 0.94327 0.93916 1.21544 1.00221 0.96540 0.96344 1.21564 1.01283 0.94498 0.97996 1.21505 1.00566 0.99248 0.93651 1.21663 1.01505 0.92874 0.98804 1.21734 0.95379 0.94874 0.90214 0.96320 1.61908 1.59428 1.02381 1.02426 1.22237 0.97917 0.97787 0.93045 1.19932 0.91533 0.87872 0.96128 1.21276 1.18892 0.97731 1.17139 0.94258 1.25805 0.99096 0.97835 0.96128 1.70047 1.44028 1.11784 1.32963 0.85777 0.79429 0.77884 0.80261 1.19432 1.20387 1.17628 0.91265 0.92922 0.94345 0.92384 0.91036 0.90417 0.91345 0.92267 0.90198 0.91229 0.91981 0.90176 0.93512 0.96548 0.95109 1.00741 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.35 71.98 0.60 -3.44 16 2 C -0.09 -2.77 2.51 -10.80 -0.03 -2.80 16 3 H 0.04 1.57 6.33 -2.38 -0.02 1.55 16 4 C -0.11 -2.54 5.45 30.59 0.17 -2.38 16 5 C -0.12 -2.23 5.65 30.59 0.17 -2.05 16 6 C -0.11 -2.25 5.92 30.60 0.18 -2.07 16 7 C -0.11 -2.93 4.39 30.60 0.13 -2.80 16 8 C 0.09 2.91 1.63 44.91 0.07 2.98 16 9 H 0.02 0.66 8.13 -2.39 -0.02 0.64 16 10 N -0.54 -22.80 3.84 -901.59 -3.46 -26.26 16 11 C 0.04 1.51 8.62 127.69 1.10 2.61 16 12 C 0.17 8.61 3.65 85.56 0.31 8.92 16 13 C -0.51 -30.42 8.92 25.60 0.23 -30.19 16 14 H 0.04 2.59 7.43 -2.91 -0.02 2.57 16 15 C 0.01 0.51 5.47 84.66 0.46 0.97 16 16 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 17 Si 0.94 45.35 27.47 68.60 1.88 47.23 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 21 H 0.07 1.86 4.81 -2.39 -0.01 1.85 16 22 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.04 1.47 7.58 -2.39 -0.02 1.45 16 24 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.30 6.41 -2.38 -0.02 1.29 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.89 6.45 -2.39 -0.02 1.88 16 31 H 0.06 1.60 6.45 -2.39 -0.02 1.59 16 32 H 0.08 2.64 6.61 -2.39 -0.02 2.63 16 33 H 0.05 2.12 6.64 -2.38 -0.02 2.11 16 34 H 0.02 0.60 8.12 -2.38 -0.02 0.58 16 35 H 0.03 1.55 5.10 -2.38 -0.01 1.54 16 36 H -0.03 -1.26 7.55 -2.38 -0.02 -1.28 16 37 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -65.91 271.35 3.09 -62.82 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.96 Total: 6.42 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 3.41 Total: -30.24 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -3.16 Total: -86.23 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -65.91 3.09 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055386507.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.608 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds