Wall clock time and date at job start Sun Mar 29 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47047 * 2 1 4 4 C 1.50702 * 109.46992 * 240.00306 * 2 1 3 5 5 H 1.08001 * 119.99323 * 240.00076 * 4 2 1 6 6 C 1.37874 * 120.00343 * 59.99845 * 4 2 1 7 7 N 1.31514 * 119.99853 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99841 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47244 * 60.00466 * 8 6 4 10 10 H 1.48504 * 109.47013 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47396 * 300.00246 * 8 6 4 12 12 N 1.46896 * 109.47058 * 120.00262 * 2 1 3 13 13 C 1.46898 * 111.00121 * 176.04784 * 12 2 1 14 14 C 1.46900 * 110.99901 * 300.00013 * 12 2 1 15 15 C 1.53002 * 109.47479 * 169.99825 * 14 12 2 16 16 C 1.55238 * 110.58012 * 289.87682 * 15 14 12 17 17 C 1.54894 * 102.58338 * 203.33342 * 16 15 14 18 18 C 1.54266 * 104.31305 * 37.93170 * 17 16 15 19 19 C 1.53869 * 106.60031 * 336.32486 * 18 17 16 20 20 H 1.09001 * 109.46989 * 60.00070 * 1 2 3 21 21 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47208 * 300.00257 * 1 2 3 23 23 H 0.96998 * 119.99471 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.47210 * 183.95215 * 13 12 2 25 25 H 1.08997 * 109.47100 * 303.95082 * 13 12 2 26 26 H 1.09001 * 109.47324 * 63.95381 * 13 12 2 27 27 H 1.09008 * 109.47245 * 49.99995 * 14 12 2 28 28 H 1.09000 * 109.47590 * 290.00296 * 14 12 2 29 29 H 1.09006 * 110.43291 * 52.45933 * 15 14 12 30 30 H 1.08996 * 110.89448 * 85.04906 * 16 15 14 31 31 H 1.08993 * 110.76342 * 321.56571 * 16 15 14 32 32 H 1.09002 * 110.48891 * 279.18596 * 17 16 15 33 33 H 1.08998 * 110.48494 * 156.67683 * 17 16 15 34 34 H 1.09001 * 110.03084 * 95.60669 * 18 17 16 35 35 H 1.08996 * 110.03108 * 216.98559 * 18 17 16 36 36 H 1.08999 * 110.04012 * 119.28327 * 19 18 17 37 37 H 1.09006 * 110.02998 * 240.67078 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2205 11 1 3.8075 -1.1190 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7946 1.1870 14 6 1.5486 -0.0265 2.4210 15 6 1.8625 -0.9044 3.6341 16 6 0.9655 -2.1713 3.6376 17 6 0.9628 -2.5789 5.1320 18 6 0.9190 -1.2377 5.8929 19 6 1.4910 -0.1730 4.9406 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7096 1.1618 -3.4844 24 1 3.8163 -1.3722 2.0500 25 1 3.8070 -1.2915 0.2719 26 1 3.9192 0.2043 1.2301 27 1 0.4721 0.1324 2.3563 28 1 2.0518 0.9345 2.5281 29 1 2.9163 -1.1834 3.6395 30 1 1.4023 -2.9587 3.0233 31 1 -0.0430 -1.9316 3.3007 32 1 1.8712 -3.1283 5.3792 33 1 0.0815 -3.1773 5.3626 34 1 -0.1098 -0.9903 6.1547 35 1 1.5287 -1.2997 6.7943 36 1 0.7400 0.5910 4.7401 37 1 2.3787 0.2824 5.3797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059951134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:08 Heat of formation + Delta-G solvation = -15.265745 kcal Electronic energy + Delta-G solvation = -14680.681217 eV Core-core repulsion = 12457.132230 eV Total energy + Delta-G solvation = -2223.548987 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.39070 -36.20518 -32.77240 -29.93507 -28.78989 -28.36456 -25.83930 -24.30697 -22.62386 -20.29688 -19.51058 -19.02558 -16.28272 -15.66887 -15.09378 -14.51480 -14.08409 -13.75055 -13.32660 -13.04342 -12.73380 -12.21667 -11.83694 -11.20844 -11.04307 -11.00967 -10.88105 -10.78537 -10.66405 -10.53087 -10.36336 -10.31705 -10.02644 -9.97932 -9.93959 -9.55358 -8.80024 -8.37936 -7.06268 -5.97311 -4.01568 3.34229 3.38364 3.41376 4.43488 4.79251 4.92478 4.95265 5.25653 5.35950 5.55868 5.67172 5.84669 5.86134 5.90407 5.97988 6.09202 6.11383 6.25127 6.30086 6.36509 6.42403 6.50477 6.58085 6.68286 6.79207 6.86774 6.95038 7.10983 7.22618 7.58749 7.80059 7.87222 8.28103 8.39043 8.68273 9.05230 9.63206 11.09575 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056216 B = 0.006998 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.963649 B = 4000.380708 C = 4101.794853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H -0.005 1.005 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.535 5.535 13 C 0.036 3.964 14 C 0.058 3.942 15 C -0.087 4.087 16 C -0.103 4.103 17 C -0.128 4.128 18 C -0.122 4.122 19 C -0.121 4.121 20 H 0.083 0.917 21 H 0.034 0.966 22 H 0.008 0.992 23 H 0.260 0.740 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.007 0.993 27 H 0.073 0.927 28 H 0.016 0.984 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.625 -3.053 12.434 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.013 0.987 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.259 5.259 13 C -0.113 4.113 14 C -0.070 4.070 15 C -0.106 4.106 16 C -0.141 4.141 17 C -0.166 4.166 18 C -0.160 4.160 19 C -0.160 4.160 20 H 0.102 0.898 21 H 0.053 0.947 22 H 0.027 0.973 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.093 0.907 26 H 0.026 0.974 27 H 0.091 0.909 28 H 0.034 0.966 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.346 -3.400 12.270 12.737 hybrid contribution 0.647 0.492 -0.856 1.181 sum 0.993 -2.908 11.414 11.820 Atomic orbital electron populations 1.21840 0.97832 0.99569 0.99744 1.19221 0.92268 0.91896 0.86086 0.98700 1.21140 1.30910 1.12203 0.89837 0.91936 1.24937 0.95268 0.95105 0.98999 1.69889 1.37028 1.23058 1.23423 0.86591 0.79047 0.79766 0.82161 1.20236 1.21391 1.20395 1.62096 1.08959 1.52688 1.02189 1.22238 0.89159 0.98563 1.01292 1.22178 1.00598 0.93994 0.90269 1.22078 0.99688 0.95571 0.93283 1.22426 0.99933 0.97365 0.94352 1.22411 1.00956 0.96648 0.96590 1.22103 1.00458 0.95425 0.97985 1.22183 1.00276 0.97928 0.95564 0.89794 0.94719 0.97342 0.92997 0.93795 0.90666 0.97448 0.90868 0.96572 0.91183 0.91229 0.91642 0.92213 0.92305 0.92292 0.92565 0.91956 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.76 37.16 0.33 -2.96 16 2 C 0.21 5.46 2.06 -68.86 -0.14 5.32 16 3 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 4 C -0.50 -13.95 7.88 -34.44 -0.27 -14.22 16 5 H 0.06 1.72 6.41 -52.49 -0.34 1.39 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.86 11.32 55.43 0.63 -25.23 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.74 4.51 -236.29 -1.07 -12.81 16 13 C 0.04 0.73 9.06 60.06 0.54 1.28 16 14 C 0.06 1.09 4.06 -3.82 -0.02 1.08 16 15 C -0.09 -1.35 2.81 -88.77 -0.25 -1.59 16 16 C -0.10 -1.53 6.26 -24.55 -0.15 -1.69 16 17 C -0.13 -1.55 6.82 -25.07 -0.17 -1.72 16 18 C -0.12 -1.40 6.80 -25.62 -0.17 -1.57 16 19 C -0.12 -1.58 6.37 -25.62 -0.16 -1.74 16 20 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 21 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.01 0.18 6.20 -51.93 -0.32 -0.15 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 24 H 0.04 0.77 6.35 -51.93 -0.33 0.44 16 25 H 0.07 1.63 6.10 -51.93 -0.32 1.31 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.07 1.41 5.72 -51.92 -0.30 1.11 16 28 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 29 H 0.07 1.10 6.31 -51.93 -0.33 0.77 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.81 7.84 -51.93 -0.41 0.41 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 281.57 15.07 4.24 4.24 Total: -1.00 -28.24 281.57 -8.21 -36.45 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.43 Total: -2.87 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -0.57 Total: -16.30 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: -0.44 Total: -38.04 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.24 -8.21 -36.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059951134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.187 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds