Wall clock time and date at job start Sun Mar 29 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47047 * 2 1 4 4 C 1.50702 * 109.46992 * 240.00306 * 2 1 3 5 5 H 1.08001 * 119.99323 * 240.00076 * 4 2 1 6 6 C 1.37874 * 120.00343 * 59.99845 * 4 2 1 7 7 N 1.31514 * 119.99853 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99841 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47244 * 60.00466 * 8 6 4 10 10 H 1.48504 * 109.47013 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47396 * 300.00246 * 8 6 4 12 12 N 1.46896 * 109.47058 * 120.00262 * 2 1 3 13 13 C 1.46898 * 111.00121 * 176.04784 * 12 2 1 14 14 C 1.46900 * 110.99901 * 300.00013 * 12 2 1 15 15 C 1.53002 * 109.47479 * 169.99825 * 14 12 2 16 16 C 1.55238 * 110.58012 * 289.87682 * 15 14 12 17 17 C 1.54894 * 102.58338 * 203.33342 * 16 15 14 18 18 C 1.54266 * 104.31305 * 37.93170 * 17 16 15 19 19 C 1.53869 * 106.60031 * 336.32486 * 18 17 16 20 20 H 1.09001 * 109.46989 * 60.00070 * 1 2 3 21 21 H 1.08997 * 109.46972 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47208 * 300.00257 * 1 2 3 23 23 H 0.96998 * 119.99471 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.47210 * 183.95215 * 13 12 2 25 25 H 1.08997 * 109.47100 * 303.95082 * 13 12 2 26 26 H 1.09001 * 109.47324 * 63.95381 * 13 12 2 27 27 H 1.09008 * 109.47245 * 49.99995 * 14 12 2 28 28 H 1.09000 * 109.47590 * 290.00296 * 14 12 2 29 29 H 1.09006 * 110.43291 * 52.45933 * 15 14 12 30 30 H 1.08996 * 110.89448 * 85.04906 * 16 15 14 31 31 H 1.08993 * 110.76342 * 321.56571 * 16 15 14 32 32 H 1.09002 * 110.48891 * 279.18596 * 17 16 15 33 33 H 1.08998 * 110.48494 * 156.67683 * 17 16 15 34 34 H 1.09001 * 110.03084 * 95.60669 * 18 17 16 35 35 H 1.08996 * 110.03108 * 216.98559 * 18 17 16 36 36 H 1.08999 * 110.04012 * 119.28327 * 19 18 17 37 37 H 1.09006 * 110.02998 * 240.67078 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2205 11 1 3.8075 -1.1190 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7946 1.1870 14 6 1.5486 -0.0265 2.4210 15 6 1.8625 -0.9044 3.6341 16 6 0.9655 -2.1713 3.6376 17 6 0.9628 -2.5789 5.1320 18 6 0.9190 -1.2377 5.8929 19 6 1.4910 -0.1730 4.9406 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.7096 1.1618 -3.4844 24 1 3.8163 -1.3722 2.0500 25 1 3.8070 -1.2915 0.2719 26 1 3.9192 0.2043 1.2301 27 1 0.4721 0.1324 2.3563 28 1 2.0518 0.9345 2.5281 29 1 2.9163 -1.1834 3.6395 30 1 1.4023 -2.9587 3.0233 31 1 -0.0430 -1.9316 3.3007 32 1 1.8712 -3.1283 5.3792 33 1 0.0815 -3.1773 5.3626 34 1 -0.1098 -0.9903 6.1547 35 1 1.5287 -1.2997 6.7943 36 1 0.7400 0.5910 4.7401 37 1 2.3787 0.2824 5.3797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059951134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:08 Heat of formation + Delta-G solvation = -31.433322 kcal Electronic energy + Delta-G solvation = -14681.382296 eV Core-core repulsion = 12457.132230 eV Total energy + Delta-G solvation = -2224.250066 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75145 -37.77981 -34.77249 -31.61200 -30.44157 -29.43508 -27.65316 -26.13870 -24.27119 -21.61122 -20.89805 -20.47482 -18.36844 -17.14657 -16.64570 -15.94051 -15.72621 -15.38703 -14.87171 -14.51471 -14.11280 -13.84718 -13.67117 -12.94810 -12.85058 -12.67181 -12.40945 -12.24084 -12.08333 -11.96599 -11.92976 -11.79725 -11.57262 -11.50532 -11.27951 -11.02511 -10.82872 -10.50405 -8.88525 -8.10961 -6.23004 1.42371 1.44444 1.51997 2.42548 3.16718 3.37021 3.84526 3.86615 3.97002 4.35407 4.52532 4.62026 4.64633 4.69234 4.73147 4.81051 4.88440 4.91261 4.99024 5.01742 5.05043 5.09686 5.17064 5.20468 5.26449 5.33865 5.48556 5.50880 5.58464 5.62228 5.73463 5.81236 6.26336 6.42461 6.77978 6.92402 7.46233 8.95133 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.056216 B = 0.006998 C = 0.006825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.963649 B = 4000.380708 C = 4101.794853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.215 3.785 3 H -0.043 1.043 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.539 5.539 13 C 0.040 3.960 14 C 0.060 3.940 15 C -0.083 4.083 16 C -0.106 4.106 17 C -0.122 4.122 18 C -0.118 4.118 19 C -0.119 4.119 20 H 0.059 0.941 21 H 0.031 0.969 22 H 0.028 0.972 23 H 0.261 0.739 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.002 0.998 27 H 0.065 0.935 28 H 0.010 0.990 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -4.085 13.745 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 H -0.026 1.026 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.263 5.263 13 C -0.108 4.108 14 C -0.068 4.068 15 C -0.102 4.102 16 C -0.143 4.143 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.157 4.157 20 H 0.078 0.922 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.020 0.980 27 H 0.083 0.917 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.765 -4.438 13.602 14.328 hybrid contribution 0.520 0.841 -1.231 1.579 sum 1.284 -3.596 12.371 12.947 Atomic orbital electron populations 1.21646 0.97368 0.99160 0.99525 1.19043 0.92643 0.89961 0.87599 1.02566 1.21425 1.31126 1.12306 0.90961 0.92144 1.25750 0.95384 0.95786 1.02010 1.70023 1.37856 1.24248 1.24097 0.85557 0.78705 0.78677 0.78362 1.19622 1.20952 1.19649 1.62063 1.09981 1.52286 1.02004 1.22224 0.88141 0.98560 1.01913 1.22245 0.99837 0.94408 0.90328 1.22037 0.99858 0.95493 0.92813 1.22398 0.98838 0.96656 0.96437 1.22374 1.02039 0.97324 0.94185 1.22095 1.01247 0.94156 0.98047 1.22171 1.00848 0.98199 0.94501 0.92249 0.95003 0.95294 0.92951 0.90584 0.92303 0.97985 0.91681 0.97215 0.91055 0.92641 0.92910 0.91293 0.91134 0.91518 0.90698 0.92305 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 8.76 71.98 0.63 -5.41 16 2 C 0.21 11.34 2.06 44.17 0.09 11.44 16 3 H -0.04 -2.56 8.14 -2.39 -0.02 -2.58 16 4 C -0.52 -29.28 7.88 25.60 0.20 -29.07 16 5 H 0.06 3.36 6.41 -2.91 -0.02 3.34 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -54.23 11.32 21.45 0.24 -53.99 16 8 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 N -0.54 -23.76 4.51 -901.47 -4.07 -27.83 16 13 C 0.04 1.61 9.06 127.69 1.16 2.77 16 14 C 0.06 2.23 4.06 86.30 0.35 2.58 16 15 C -0.08 -2.43 2.81 -9.60 -0.03 -2.45 16 16 C -0.11 -2.98 6.26 32.01 0.20 -2.78 16 17 C -0.12 -2.59 6.82 31.67 0.22 -2.37 16 18 C -0.12 -2.31 6.80 31.32 0.21 -2.09 16 19 C -0.12 -2.80 6.37 31.32 0.20 -2.60 16 20 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 21 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.03 1.30 6.20 -2.39 -0.01 1.28 16 23 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 24 H 0.08 2.55 6.35 -2.39 -0.02 2.53 16 25 H 0.06 2.55 6.10 -2.39 -0.01 2.53 16 26 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 27 H 0.06 2.50 5.72 -2.38 -0.01 2.49 16 28 H 0.01 0.37 8.12 -2.39 -0.02 0.35 16 29 H 0.07 2.07 6.31 -2.38 -0.02 2.05 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.60 7.98 -2.39 -0.02 1.59 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.42 7.84 -2.39 -0.02 1.40 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -60.48 281.57 2.89 -57.58 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.01 Total: 6.96 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.68 Total: -29.03 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -3.83 Total: -81.82 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -60.48 2.89 -57.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059951134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.152 kcal (2) G-P(sol) polarization free energy of solvation -60.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds