Wall clock time and date at job start Sun Mar 29 2020 21:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36955 * 119.99745 * 2 1 4 4 H 1.08007 * 119.99854 * 217.52939 * 3 2 1 5 5 C 1.38979 * 120.00205 * 37.53538 * 3 2 1 6 6 N 1.31410 * 119.99723 * 9.73461 * 5 3 2 7 7 Si 1.86800 * 120.00154 * 189.74544 * 5 3 2 8 8 H 1.48497 * 109.47582 * 89.99451 * 7 5 3 9 9 H 1.48501 * 109.46894 * 210.00036 * 7 5 3 10 10 H 1.48500 * 109.47036 * 329.99375 * 7 5 3 11 11 C 1.34771 * 120.00463 * 180.02562 * 2 1 3 12 12 O 1.21660 * 120.00472 * 174.72991 * 11 2 1 13 13 C 1.47182 * 119.99598 * 355.00363 * 11 2 1 14 14 C 1.35297 * 123.15083 * 185.35182 * 13 11 2 15 15 S 1.70941 * 108.82022 * 179.87041 * 14 13 11 16 16 C 1.70767 * 91.13466 * 0.32687 * 15 14 13 17 17 N 1.28647 * 110.57881 * 359.80552 * 16 15 14 18 18 H 1.09007 * 109.46996 * 240.09205 * 1 2 3 19 19 H 1.09000 * 109.47379 * 0.08970 * 1 2 3 20 20 H 1.09002 * 109.47496 * 120.09413 * 1 2 3 21 21 H 0.97006 * 119.99689 * 179.97438 * 6 5 3 22 22 H 1.07995 * 125.58935 * 359.97403 * 14 13 11 23 23 H 1.08000 * 124.71348 * 179.83096 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1861 0.0000 4 1 3.0621 1.2829 -0.5698 5 6 1.6706 2.2651 0.7333 6 7 0.6747 2.0977 1.5742 7 14 2.4419 3.9534 0.5232 8 1 1.7344 4.6904 -0.5545 9 1 2.3305 4.7103 1.7960 10 1 3.8741 3.8017 0.1613 11 6 2.1389 -1.1671 -0.0005 12 8 3.3516 -1.1693 -0.0973 13 6 1.4072 -2.4394 0.1099 14 6 2.0222 -3.6393 0.2213 15 16 0.8317 -4.8613 0.3284 16 6 -0.4170 -3.7026 0.2087 17 7 0.0738 -2.5181 0.1040 18 1 -0.3633 -0.5124 0.8909 19 1 -0.3634 1.0276 -0.0016 20 1 -0.3634 -0.5153 -0.8891 21 1 0.3406 2.8507 2.0863 22 1 3.0901 -3.7988 0.2412 23 1 -1.4722 -3.9323 0.2198 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062357322.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:55 Heat of formation + Delta-G solvation = 3.927014 kcal Electronic energy + Delta-G solvation = -11893.584346 eV Core-core repulsion = 9640.695296 eV Total energy + Delta-G solvation = -2252.889050 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.29551 -39.27840 -36.74512 -33.71801 -31.44712 -28.53399 -27.13500 -25.85738 -23.18209 -20.40833 -19.62434 -18.74313 -17.27992 -16.87127 -16.52244 -16.12196 -15.63703 -14.83448 -14.43271 -14.18804 -13.73873 -13.37483 -13.20826 -12.79207 -12.66876 -12.48174 -12.13101 -11.05133 -10.74417 -10.60385 -10.40127 -9.82329 -9.52722 -8.41168 -6.17424 -0.32444 0.48460 0.75478 1.19084 1.39267 1.46180 1.53928 2.25322 2.51124 3.00622 3.07956 3.43954 4.14701 4.30821 4.52749 4.88218 4.98066 5.01762 5.34996 5.41011 6.11887 6.38656 6.68722 7.05996 7.31733 7.92969 8.63274 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.070422 B = 0.008721 C = 0.007995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.508509 B = 3209.972492 C = 3501.138411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.438 5.438 3 C -0.353 4.353 4 H 0.071 0.929 5 C 0.000 4.000 6 N -0.891 5.891 7 Si 1.000 3.000 8 H -0.259 1.259 9 H -0.270 1.270 10 H -0.273 1.273 11 C 0.497 3.503 12 O -0.629 6.629 13 C 0.000 4.000 14 C -0.257 4.257 15 S 0.288 5.712 16 C -0.010 4.010 17 N -0.470 5.470 18 H 0.048 0.952 19 H 0.061 0.939 20 H 0.048 0.952 21 H 0.277 0.723 22 H 0.179 0.821 23 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.712 -11.530 -1.303 12.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.154 5.154 3 C -0.481 4.481 4 H 0.089 0.911 5 C -0.203 4.203 6 N -0.528 5.528 7 Si 0.821 3.179 8 H -0.184 1.184 9 H -0.195 1.195 10 H -0.198 1.198 11 C 0.285 3.715 12 O -0.517 6.517 13 C -0.135 4.135 14 C -0.400 4.400 15 S 0.543 5.457 16 C -0.308 4.308 17 N -0.186 5.186 18 H 0.067 0.933 19 H 0.080 0.920 20 H 0.066 0.934 21 H 0.087 0.913 22 H 0.197 0.803 23 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.672 -11.971 -1.160 13.298 hybrid contribution 0.912 1.801 -0.002 2.019 sum -4.760 -10.170 -1.162 11.289 Atomic orbital electron populations 1.21440 0.78955 1.00834 0.99412 1.43633 1.07085 1.04191 1.60485 1.19647 1.09680 0.88940 1.29844 0.91106 1.26402 0.96855 1.03982 0.93037 1.70028 1.26316 1.33467 1.22946 0.84865 0.78507 0.76053 0.78445 1.18395 1.19464 1.19758 1.17965 0.86403 0.83911 0.83239 1.90548 1.15053 1.87678 1.58429 1.20532 0.89379 0.94937 1.08617 1.26729 1.07895 0.96942 1.08390 1.82030 0.92830 1.08417 1.62441 1.29320 1.07634 0.90551 1.03309 1.67365 1.09806 1.25654 1.15754 0.93310 0.92020 0.93404 0.91315 0.80345 0.74073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.95 7.87 127.77 1.01 7.95 14 2 N -0.44 -25.49 2.94 -662.89 -1.95 -27.44 14 3 C -0.35 -21.50 8.99 84.07 0.76 -20.75 14 4 H 0.07 4.50 7.65 -2.91 -0.02 4.48 14 5 C 0.00 0.01 5.02 84.93 0.43 0.44 14 6 N -0.89 -50.21 11.29 21.67 0.24 -49.96 14 7 Si 1.00 43.74 29.56 68.60 2.03 45.76 14 8 H -0.26 -10.61 7.11 99.48 0.71 -9.90 14 9 H -0.27 -11.19 7.11 99.48 0.71 -10.48 14 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 14 11 C 0.50 28.19 7.59 86.59 0.66 28.85 14 12 O -0.63 -39.28 16.57 -4.22 -0.07 -39.35 14 13 C 0.00 -0.01 6.55 40.55 0.27 0.26 14 14 C -0.26 -8.93 10.62 67.14 0.71 -8.22 14 15 S 0.29 6.09 22.96 -56.49 -1.30 4.79 14 16 C -0.01 -0.24 12.17 130.71 1.59 1.35 14 17 N -0.47 -17.76 6.79 -193.04 -1.31 -19.07 14 18 H 0.05 2.46 7.01 -2.38 -0.02 2.44 14 19 H 0.06 3.27 6.13 -2.39 -0.01 3.26 14 20 H 0.05 2.21 7.32 -2.39 -0.02 2.19 14 21 H 0.28 14.38 8.31 -92.70 -0.77 13.61 14 22 H 0.18 6.15 8.04 -2.91 -0.02 6.12 14 23 H 0.24 3.47 8.06 -2.91 -0.02 3.44 14 Total: -1.00 -75.90 222.77 4.29 -71.61 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: 1.23 Total: 3.79 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 5.41 Total: 9.87 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -3.01 Total: -96.47 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.07 Total: -39.35 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 6.09 SS G_CDS: -1.30 Total: 4.79 kcal Total: -75.90 4.29 -71.61 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062357322.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.534 kcal (2) G-P(sol) polarization free energy of solvation -75.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds