Wall clock time and date at job start Sun Mar 29 2020 21:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99873 * 179.97438 * 10 9 7 12 12 O 1.21637 * 119.99895 * 0.02562 * 11 10 9 13 13 C 1.47266 * 120.00276 * 180.02562 * 11 10 9 14 14 C 1.35198 * 123.14438 * 179.73711 * 13 11 10 15 15 S 1.70942 * 108.82956 * 179.87148 * 14 13 11 16 16 C 1.70772 * 91.12667 * 0.32603 * 15 14 13 17 17 N 1.28643 * 110.55928 * 359.80555 * 16 15 14 18 18 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 20 20 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 21 21 H 0.96999 * 120.00080 * 0.02562 * 10 9 7 22 22 H 1.08008 * 125.58517 * 359.97438 * 14 13 11 23 23 H 1.08000 * 124.72043 * 179.84330 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 1.7542 -4.8833 0.0011 12 8 0.5583 -5.1056 0.0011 13 6 2.7112 -6.0026 0.0016 14 6 2.3312 -7.3000 0.0074 15 16 3.7288 -8.2843 0.0023 16 6 4.7394 -6.9077 0.0026 17 7 4.0357 -5.8308 0.0021 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5570 -0.8897 20 1 0.6243 -2.5567 0.8903 21 1 3.1570 -3.4352 0.0009 22 1 1.3116 -7.6563 0.0124 23 1 5.8190 -6.9371 0.0025 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062357363.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:56 Heat of formation + Delta-G solvation = -25.295236 kcal Electronic energy + Delta-G solvation = -11291.249138 eV Core-core repulsion = 9037.092916 eV Total energy + Delta-G solvation = -2254.156222 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.40712 -39.53596 -36.25495 -34.39157 -31.68903 -29.64356 -26.83131 -24.88288 -23.10568 -20.91082 -19.98562 -18.48751 -17.54863 -16.88829 -16.59298 -16.54522 -15.69626 -15.16491 -14.74409 -14.27720 -14.04569 -13.91141 -13.03952 -12.88374 -12.72954 -12.26106 -11.53765 -11.18638 -10.83732 -10.80699 -10.72171 -10.11363 -9.76997 -8.31789 -6.48966 -0.44442 0.35845 0.65373 1.00413 1.41873 1.45025 1.56610 2.30524 2.34179 2.53930 3.02582 3.22019 4.00751 4.17979 4.40937 4.85975 5.05487 5.16651 5.40113 5.60031 5.79048 6.42489 6.59501 6.83133 7.16309 7.31439 8.80557 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.069396 B = 0.006356 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.385466 B = 4404.342259 C = 4792.582801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.989 3.011 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.265 3.735 10 N -0.690 5.690 11 C 0.568 3.432 12 O -0.593 6.593 13 C -0.018 4.018 14 C -0.240 4.240 15 S 0.311 5.689 16 C -0.004 4.004 17 N -0.476 5.476 18 H 0.271 0.729 19 H -0.006 1.006 20 H -0.006 1.006 21 H 0.410 0.590 22 H 0.188 0.812 23 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.501 -16.105 0.012 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.598 4.598 8 H 0.097 0.903 9 C 0.142 3.858 10 N -0.338 5.338 11 C 0.352 3.648 12 O -0.476 6.476 13 C -0.153 4.153 14 C -0.383 4.383 15 S 0.566 5.434 16 C -0.303 4.303 17 N -0.192 5.192 18 H 0.079 0.921 19 H 0.011 0.989 20 H 0.012 0.988 21 H 0.246 0.754 22 H 0.205 0.795 23 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 11.988 -16.626 0.013 20.497 hybrid contribution -0.562 1.860 -0.009 1.943 sum 11.426 -14.766 0.004 18.670 Atomic orbital electron populations 1.70127 1.08194 1.28738 1.49638 1.26088 0.95881 1.03917 0.93611 0.85098 0.78385 0.76655 0.78719 1.19412 1.20495 1.18166 1.21565 0.94170 0.90563 1.53453 0.90265 1.18681 0.88562 0.83977 0.94565 1.46127 1.11673 1.05215 1.70770 1.17860 0.87104 0.83169 0.76625 1.90723 1.17392 1.85455 1.54025 1.20241 0.90304 0.93438 1.11348 1.26908 1.08714 0.96850 1.05869 1.82339 0.90810 1.08781 1.61432 1.29206 1.07393 0.90655 1.03054 1.66925 1.03320 1.33289 1.15642 0.92056 0.98855 0.98830 0.75376 0.79455 0.73846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.95 14 2 C 0.00 0.28 5.46 84.65 0.46 0.74 14 3 Si 0.99 43.68 29.54 68.60 2.03 45.71 14 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 14 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 14 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 14 7 C -0.56 -32.28 9.28 25.60 0.24 -32.04 14 8 H 0.08 4.23 7.60 -2.91 -0.02 4.21 14 9 C 0.26 15.54 5.43 85.63 0.46 16.00 14 10 N -0.69 -33.86 5.55 -470.23 -2.61 -36.47 14 11 C 0.57 26.54 7.80 86.62 0.68 27.21 14 12 O -0.59 -31.78 16.71 -4.15 -0.07 -31.85 14 13 C -0.02 -0.65 6.70 40.55 0.27 -0.38 14 14 C -0.24 -6.39 10.62 67.12 0.71 -5.68 14 15 S 0.31 4.50 22.97 -56.49 -1.30 3.20 14 16 C 0.00 -0.08 12.17 130.71 1.59 1.51 14 17 N -0.48 -14.18 10.12 -193.03 -1.95 -16.13 14 18 H 0.27 15.45 8.31 -92.71 -0.77 14.68 14 19 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 14 20 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 14 21 H 0.41 18.19 7.84 -92.71 -0.73 17.47 14 22 H 0.19 4.84 8.03 -2.91 -0.02 4.82 14 23 H 0.25 1.98 8.06 -2.91 -0.02 1.96 14 Total: -1.00 -76.25 233.06 1.31 -74.93 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.52 Total: 10.20 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 4.42 Total: 7.36 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -4.28 Total: -109.55 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.07 Total: -31.85 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.30 Total: 3.20 kcal Total: -76.25 1.31 -74.93 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062357363.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.637 kcal (2) G-P(sol) polarization free energy of solvation -76.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds