Wall clock time and date at job start Sun Mar 29 2020 21:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47071 * 2 1 4 4 C 1.50697 * 109.47179 * 119.99712 * 2 1 3 5 5 H 1.08002 * 120.00277 * 119.99917 * 4 2 1 6 6 C 1.37879 * 119.99986 * 300.00272 * 4 2 1 7 7 N 1.31514 * 119.99838 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99935 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47046 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47438 * 119.99800 * 8 6 4 11 11 H 1.48496 * 109.46991 * 239.99690 * 8 6 4 12 12 N 1.46500 * 109.46872 * 239.99487 * 2 1 3 13 13 C 1.46494 * 120.00382 * 300.00054 * 12 2 1 14 14 C 1.38608 * 119.99674 * 120.00139 * 12 2 1 15 15 N 1.29691 * 124.95290 * 0.27682 * 14 12 2 16 16 C 1.32117 * 116.87032 * 180.20837 * 15 14 12 17 17 C 1.33327 * 114.57651 * 359.52631 * 16 15 14 18 18 S 1.70968 * 124.95130 * 179.97438 * 14 12 2 19 19 H 1.08996 * 109.47304 * 300.00122 * 1 2 3 20 20 H 1.08999 * 109.47236 * 60.00041 * 1 2 3 21 21 H 1.09006 * 109.47325 * 180.02562 * 1 2 3 22 22 H 0.97008 * 119.99682 * 180.02562 * 7 6 4 23 23 H 1.09002 * 109.47207 * 270.00147 * 13 12 2 24 24 H 1.09004 * 109.47249 * 30.00149 * 13 12 2 25 25 H 1.09001 * 109.47453 * 150.00440 * 13 12 2 26 26 H 1.08002 * 122.71469 * 179.80156 * 16 15 14 27 27 H 1.08006 * 125.94886 * 180.26993 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6033 8 14 2.3225 -1.1193 4.0080 9 1 3.1475 -2.2861 3.6038 10 1 3.1473 -0.1856 4.8161 11 1 1.1679 -1.5864 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.8152 -0.0171 -2.1085 15 7 3.1902 1.2193 -1.9969 16 6 3.9479 1.7032 -2.9650 17 6 4.2332 0.8326 -3.9336 18 16 3.4530 -0.6974 -3.5415 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 0.7094 1.1620 3.4844 23 1 2.4157 -2.7378 -0.9715 24 1 0.6904 -2.3003 -0.9845 25 1 1.6238 -2.2854 -2.5001 26 1 4.3106 2.7205 -2.9693 27 1 4.8381 1.0306 -4.8063 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096182.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:03 Heat of formation + Delta-G solvation = 36.248135 kcal Electronic energy + Delta-G solvation = -12103.559130 eV Core-core repulsion = 9987.904723 eV Total energy + Delta-G solvation = -2115.654407 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.41850 -38.07841 -34.89768 -31.56425 -30.37000 -27.44640 -27.25287 -25.04516 -22.56073 -20.30657 -19.13484 -18.27050 -17.21710 -16.57480 -15.96605 -15.51880 -15.41652 -14.54613 -14.30640 -13.96780 -13.45452 -13.20954 -12.97092 -12.71914 -12.55689 -12.25784 -12.11574 -12.08793 -11.30800 -10.69654 -10.55478 -10.21394 -10.01294 -8.36764 -8.05734 -6.30854 0.26277 0.37408 1.06135 1.40176 1.42179 1.53237 2.23106 2.28759 2.45221 3.13222 3.89082 4.33063 4.56109 4.62898 4.70674 4.83345 4.88036 4.95621 5.05759 5.29256 5.47715 5.58483 5.83894 6.09787 6.24092 6.48877 6.78868 7.30406 7.40756 8.89350 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.044771 B = 0.009085 C = 0.008873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.250644 B = 3081.191770 C = 3154.945688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.278 3.722 3 H 0.023 0.977 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.269 1.269 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.572 5.572 13 C 0.097 3.903 14 C 0.307 3.693 15 N -0.609 5.609 16 C 0.069 3.931 17 C -0.312 4.312 18 S 0.091 5.909 19 H 0.070 0.930 20 H 0.019 0.981 21 H 0.045 0.955 22 H 0.265 0.735 23 H 0.054 0.946 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.187 0.813 27 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -4.361 -10.615 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.175 3.825 3 H 0.041 0.959 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.288 5.288 13 C -0.045 4.045 14 C -0.062 4.062 15 N -0.338 5.338 16 C -0.080 4.080 17 C -0.454 4.454 18 S 0.338 5.662 19 H 0.089 0.911 20 H 0.038 0.962 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.204 0.796 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.797 -5.051 -10.360 11.860 hybrid contribution 0.486 0.867 1.108 1.488 sum 3.283 -4.184 -9.252 10.672 Atomic orbital electron populations 1.21931 0.97426 1.00000 0.99989 1.18611 0.91210 0.92323 0.80376 0.95906 1.21619 1.31814 1.13011 0.91319 0.92676 1.25673 0.95057 0.95630 1.01783 1.70018 1.37291 1.23765 1.24373 0.85430 0.78221 0.78448 0.79032 1.19284 1.21012 1.19928 1.46733 1.49318 1.11575 1.21158 1.21746 1.01965 0.79486 1.01328 1.24159 0.95505 0.91909 0.94652 1.66455 1.23183 1.11885 1.32230 1.21765 0.95579 1.01944 0.88727 1.26661 1.15168 0.94822 1.08748 1.83241 1.49180 1.16521 1.17291 0.91110 0.96188 0.93601 0.92597 0.92700 0.89845 0.90213 0.79622 0.78030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 8.95 71.98 0.64 -5.90 15 2 C 0.28 14.52 2.71 44.25 0.12 14.64 15 3 H 0.02 1.39 7.12 -2.39 -0.02 1.38 15 4 C -0.54 -29.57 8.37 25.60 0.21 -29.36 15 5 H 0.06 3.00 7.65 -2.91 -0.02 2.97 15 6 C 0.02 1.00 5.30 84.66 0.45 1.45 15 7 N -0.92 -52.53 11.32 21.45 0.24 -52.28 15 8 Si 0.96 43.31 29.54 68.60 2.03 45.34 15 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 12 N -0.57 -25.13 2.86 -715.81 -2.05 -27.17 15 13 C 0.10 3.33 9.65 127.77 1.23 4.56 15 14 C 0.31 12.89 7.75 179.32 1.39 14.28 15 15 N -0.61 -27.15 9.54 -202.02 -1.93 -29.08 15 16 C 0.07 2.38 11.34 83.54 0.95 3.33 15 17 C -0.31 -8.85 11.34 66.71 0.76 -8.09 15 18 S 0.09 2.80 21.69 -56.49 -1.22 1.57 15 19 H 0.07 3.80 6.07 -2.39 -0.01 3.78 15 20 H 0.02 0.89 8.14 -2.39 -0.02 0.87 15 21 H 0.05 2.02 6.66 -2.38 -0.02 2.01 15 22 H 0.26 14.35 8.31 -92.70 -0.77 13.58 15 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.08 2.80 6.43 -2.38 -0.02 2.78 15 25 H 0.08 2.22 7.05 -2.39 -0.02 2.20 15 26 H 0.19 5.18 8.06 -2.91 -0.02 5.16 15 27 H 0.20 4.00 8.06 -2.91 -0.02 3.98 15 Total: -1.00 -64.38 243.34 3.99 -60.39 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: 1.16 Total: 6.32 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.75 Total: -5.08 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -3.73 Total: -108.53 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.22 Total: 1.57 kcal Total: -64.38 3.99 -60.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096182.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.636 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds