Wall clock time and date at job start Sun Mar 29 2020 21:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.47089 * 2 1 4 4 C 1.46898 * 110.99919 * 298.66919 * 3 2 1 5 5 C 1.53002 * 109.46913 * 288.35473 * 4 3 2 6 6 C 1.53004 * 109.47065 * 180.34330 * 5 4 3 7 7 C 1.50695 * 109.46996 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00174 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99794 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00106 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00076 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47072 * 59.99690 * 11 9 7 13 13 H 1.48501 * 109.47397 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47221 * 300.00003 * 11 9 7 15 15 C 1.46903 * 110.99906 * 62.62291 * 3 2 1 16 16 C 1.53003 * 109.47020 * 66.04665 * 15 3 2 17 17 C 1.53000 * 117.49670 * 243.61842 * 16 15 3 18 18 C 1.52999 * 117.49347 * 174.99944 * 16 15 3 19 19 H 1.08992 * 109.47092 * 62.89768 * 1 2 3 20 20 H 1.08999 * 109.46857 * 182.89777 * 1 2 3 21 21 H 1.08999 * 109.47000 * 302.89408 * 1 2 3 22 22 H 1.09002 * 109.47382 * 239.99955 * 2 1 3 23 23 H 1.09001 * 109.47321 * 120.00039 * 2 1 3 24 24 H 1.08995 * 109.47154 * 48.35453 * 4 3 2 25 25 H 1.09004 * 109.47008 * 168.35755 * 4 3 2 26 26 H 1.08993 * 109.47191 * 300.34326 * 5 4 3 27 27 H 1.09000 * 109.47033 * 60.34843 * 5 4 3 28 28 H 1.09002 * 109.46755 * 300.00523 * 6 5 4 29 29 H 1.09001 * 109.47029 * 59.99869 * 6 5 4 30 30 H 0.96994 * 120.00316 * 180.02562 * 10 9 7 31 31 H 1.08998 * 109.46786 * 186.04218 * 15 3 2 32 32 H 1.08996 * 109.47082 * 306.04476 * 15 3 2 33 33 H 1.08994 * 115.54833 * 29.33068 * 16 15 3 34 34 H 1.08998 * 117.49700 * 0.02562 * 17 16 15 35 35 H 1.08998 * 117.49596 * 145.02066 * 17 16 15 36 36 H 1.09005 * 117.49338 * 214.97668 * 18 16 15 37 37 H 1.08996 * 117.50453 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5748 2.1006 -1.2033 5 6 2.3380 1.5748 -2.4207 6 6 1.8808 2.3261 -3.6727 7 6 2.6320 1.8077 -4.8718 8 1 3.3627 1.0215 -4.7528 9 6 2.3872 2.3381 -6.1208 10 7 1.4977 3.2959 -6.2657 11 14 3.3188 1.6962 -7.6071 12 1 3.0466 0.2458 -7.7735 13 1 2.8751 2.4253 -8.8224 14 1 4.7752 1.9066 -7.4073 15 6 1.6005 2.0915 1.2179 16 6 2.2855 1.4632 2.4332 17 6 1.3921 0.7975 3.4819 18 6 2.0692 2.1342 3.7911 19 1 -0.3633 0.4682 -0.9148 20 1 -0.3633 -1.0264 0.0520 21 1 -0.3633 0.5581 0.8629 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.5063 1.9402 -1.3472 25 1 1.7696 3.1665 -1.0849 26 1 3.4069 1.7296 -2.2741 27 1 2.1383 0.5102 -2.5427 28 1 0.8118 2.1713 -3.8192 29 1 2.0804 3.3907 -3.5508 30 1 1.3252 3.6688 -7.1443 31 1 1.8831 3.1416 1.1441 32 1 0.5191 2.0132 1.3294 33 1 3.2601 1.0139 2.2434 34 1 0.3165 0.8068 3.3056 35 1 1.7790 -0.0903 3.9820 36 1 2.9016 2.1258 4.4949 37 1 1.4394 3.0234 3.8186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068947002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:38 Heat of formation + Delta-G solvation = 8.814210 kcal Electronic energy + Delta-G solvation = -14044.316207 eV Core-core repulsion = 11821.811405 eV Total energy + Delta-G solvation = -2222.504802 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.76064 -36.41665 -33.62020 -31.44958 -29.95524 -27.26794 -25.15752 -23.59022 -22.45825 -21.42985 -19.87398 -19.24289 -16.30466 -16.21667 -15.36204 -15.03820 -14.44143 -14.38675 -13.56243 -13.02967 -12.95190 -12.30579 -12.22410 -11.87091 -11.65467 -11.52649 -11.26954 -11.04226 -10.80846 -10.62419 -10.58276 -10.46858 -10.27436 -9.91090 -9.50293 -9.25536 -9.01400 -8.29379 -7.93046 -5.95069 -3.96853 3.36866 3.40721 3.43709 3.72406 4.17714 4.51009 4.75129 4.87171 4.99814 5.20689 5.37555 5.40673 5.46991 5.51409 5.56745 5.66195 5.73560 5.78996 5.87655 5.95413 6.00322 6.04296 6.22538 6.29601 6.43512 6.45765 6.78213 6.87693 7.21079 7.46148 7.50409 7.74177 7.90055 8.05963 8.49754 9.10305 9.66796 11.16430 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063463 B = 0.005119 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.095822 B = 5468.709203 C = 5543.427294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.050 3.950 5 C -0.102 4.102 6 C 0.022 3.978 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.079 3.921 16 C -0.139 4.139 17 C -0.185 4.185 18 C -0.182 4.182 19 H 0.062 0.938 20 H 0.056 0.944 21 H 0.052 0.948 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -4.160 16.897 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.078 4.078 3 N -0.258 5.258 4 C -0.077 4.077 5 C -0.140 4.140 6 C -0.016 4.016 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.049 4.049 16 C -0.157 4.157 17 C -0.222 4.222 18 C -0.219 4.219 19 H 0.081 0.919 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.805 -4.049 16.749 17.251 hybrid contribution -0.488 -0.263 -0.846 1.011 sum -1.293 -4.313 15.903 16.528 Atomic orbital electron populations 1.22412 0.98835 1.01858 1.02040 1.22125 0.92555 0.90672 1.02442 1.62277 1.59455 1.02243 1.01784 1.22358 0.97833 0.97715 0.89750 1.21605 0.99241 0.99535 0.93626 1.19071 0.96358 0.95404 0.90744 1.21227 1.22133 1.19869 0.92360 0.92748 1.25024 0.95360 0.95101 0.99010 1.69957 1.33701 1.26637 1.23419 0.86665 0.80297 0.78953 0.82125 1.20289 1.21341 1.20229 1.21719 0.96666 0.97727 0.88772 1.22315 1.00824 1.03185 0.89398 1.23027 0.98758 0.96299 1.04146 1.22932 1.03343 0.96420 0.99223 0.91908 0.92517 0.92912 0.90353 0.91228 0.94671 0.91595 0.92731 0.93549 0.96920 0.96694 0.93033 0.90756 0.94576 0.87106 0.89185 0.89141 0.88960 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 9.27 37.16 0.34 -2.16 16 2 C 0.05 0.70 5.74 -3.83 -0.02 0.68 16 3 N -0.53 -8.22 4.67 -234.63 -1.10 -9.31 16 4 C 0.05 0.90 4.82 -3.82 -0.02 0.88 16 5 C -0.10 -2.19 5.19 -26.73 -0.14 -2.33 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 11 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.08 1.03 5.04 -3.82 -0.02 1.01 16 16 C -0.14 -1.56 4.76 -90.62 -0.43 -1.99 16 17 C -0.19 -1.78 10.18 -26.73 -0.27 -2.05 16 18 C -0.18 -1.72 10.25 -26.73 -0.27 -1.99 16 19 H 0.06 0.92 6.35 -51.93 -0.33 0.59 16 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.64 6.20 -51.93 -0.32 0.32 16 22 H 0.08 1.19 6.65 -51.93 -0.35 0.85 16 23 H 0.07 0.88 7.20 -51.93 -0.37 0.50 16 24 H 0.04 0.63 5.87 -51.93 -0.31 0.33 16 25 H 0.07 1.18 7.82 -51.93 -0.41 0.78 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.98 6.74 -51.93 -0.35 0.63 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 32 H 0.04 0.46 5.76 -51.93 -0.30 0.16 16 33 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.09 0.86 8.03 -51.93 -0.42 0.44 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 293.26 15.07 4.42 4.42 Total: -1.00 -29.86 293.26 -8.82 -38.68 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.48 Total: -2.80 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -1.38 Total: -21.29 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.36 Total: -36.01 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.86 -8.82 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068947002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.492 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds