Wall clock time and date at job start Sun Mar 29 2020 21:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47082 * 2 1 4 4 H 1.09001 * 109.47191 * 55.60366 * 3 2 1 5 5 C 1.50708 * 109.46722 * 175.59780 * 3 2 1 6 6 H 1.07998 * 119.99443 * 120.00496 * 5 3 2 7 7 C 1.37872 * 120.00051 * 299.72319 * 5 3 2 8 8 N 1.31519 * 120.00180 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99766 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46986 * 60.00275 * 9 7 5 11 11 H 1.48500 * 109.47159 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47330 * 300.00259 * 9 7 5 13 13 N 1.46894 * 109.47476 * 295.59842 * 3 2 1 14 14 C 1.46898 * 111.00169 * 150.16324 * 13 3 2 15 15 H 1.08997 * 109.46884 * 327.11897 * 14 13 3 16 16 C 1.53004 * 109.46912 * 87.11693 * 14 13 3 17 17 C 1.53000 * 109.47155 * 207.11514 * 14 13 3 18 18 C 1.53003 * 109.46818 * 63.45405 * 17 14 13 19 19 C 1.53003 * 117.49460 * 244.15898 * 18 17 14 20 20 C 1.53002 * 117.49358 * 175.50095 * 18 17 14 21 21 H 1.08998 * 109.47280 * 185.95152 * 1 2 3 22 22 H 1.09003 * 109.46824 * 305.94877 * 1 2 3 23 23 H 1.09000 * 109.47556 * 65.94647 * 1 2 3 24 24 H 1.09005 * 109.47024 * 240.00160 * 2 1 3 25 25 H 1.09004 * 109.47559 * 120.00416 * 2 1 3 26 26 H 0.96998 * 119.99406 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99748 * 26.21152 * 13 3 2 28 28 H 1.08988 * 109.47084 * 180.02562 * 16 14 13 29 29 H 1.09006 * 109.47143 * 300.00545 * 16 14 13 30 30 H 1.09003 * 109.47173 * 59.99948 * 16 14 13 31 31 H 1.09000 * 109.47032 * 183.45194 * 17 14 13 32 32 H 1.08996 * 109.46934 * 303.45104 * 17 14 13 33 33 H 1.08990 * 115.54963 * 29.82895 * 18 17 14 34 34 H 1.08996 * 117.50172 * 0.02562 * 19 18 17 35 35 H 1.08996 * 117.49581 * 145.02484 * 19 18 17 36 36 H 1.09005 * 117.49354 * 214.97527 * 20 18 17 37 37 H 1.08997 * 117.50465 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6137 1.9786 0.8480 5 6 3.5431 1.4438 0.1091 6 1 4.1406 1.8911 -0.6714 7 6 4.1550 0.8791 1.2080 8 7 3.4271 0.3389 2.1608 9 14 6.0181 0.8814 1.3434 10 1 6.5131 2.2814 1.3371 11 1 6.4233 0.2184 2.6089 12 1 6.5991 0.1458 0.1917 13 7 1.6390 2.1037 -1.2490 14 6 1.4506 3.5461 -1.0441 15 1 1.0774 3.7241 -0.0356 16 6 2.7881 4.2662 -1.2275 17 6 0.4409 4.0783 -2.0630 18 6 -0.9197 3.4206 -1.8239 19 6 -1.4755 2.5243 -2.9324 20 6 -2.0957 3.9003 -2.6771 21 1 -0.3634 -1.0221 0.1066 22 1 -0.3633 0.6033 0.8320 23 1 -0.3634 0.4189 -0.9384 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.8577 -0.0587 2.9337 27 1 0.8062 1.6808 -1.6307 28 1 2.6484 5.3363 -1.0751 29 1 3.5075 3.8869 -0.5016 30 1 3.1614 4.0881 -2.2360 31 1 0.3471 5.1585 -1.9513 32 1 0.7849 3.8457 -3.0708 33 1 -1.1291 3.1350 -0.7932 34 1 -0.8718 2.4028 -3.8316 35 1 -2.0511 1.6492 -2.6307 36 1 -3.0790 3.9298 -2.2075 37 1 -1.9003 4.6847 -3.4083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069665847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:40 Heat of formation + Delta-G solvation = 3.782367 kcal Electronic energy + Delta-G solvation = -14765.905710 eV Core-core repulsion = 12543.182711 eV Total energy + Delta-G solvation = -2222.722999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.10645 -36.03062 -33.34673 -31.60116 -28.79775 -27.00766 -25.99922 -22.77157 -22.19395 -20.66980 -19.67368 -19.42378 -16.26708 -15.62041 -14.88803 -14.50196 -14.04409 -13.89121 -13.13543 -12.72841 -12.39435 -12.02459 -11.84548 -11.51982 -11.37615 -11.07566 -11.04168 -10.82035 -10.75434 -10.61195 -10.44578 -9.96613 -9.80776 -9.66962 -9.56618 -9.29314 -8.94433 -8.26733 -7.10304 -5.89659 -3.92310 3.37695 3.41762 3.45278 3.95860 4.50204 4.84976 5.07055 5.08482 5.34662 5.44427 5.56041 5.71727 5.82170 5.94343 6.07972 6.11330 6.20294 6.21244 6.23573 6.29811 6.44124 6.45568 6.55320 6.62410 6.89149 6.91110 7.13807 7.20006 7.29960 7.59613 7.85512 8.01867 8.44815 8.52299 8.90743 9.15498 9.71798 11.15814 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038614 B = 0.008872 C = 0.007582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.959085 B = 3155.168567 C = 3691.939001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.487 4.487 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.683 5.683 14 C 0.096 3.904 15 H 0.033 0.967 16 C -0.138 4.138 17 C -0.093 4.093 18 C -0.149 4.149 19 C -0.178 4.178 20 C -0.186 4.186 21 H 0.036 0.964 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.097 0.903 26 H 0.258 0.742 27 H 0.321 0.679 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 4.923 -6.643 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.020 0.980 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.015 4.015 15 H 0.051 0.949 16 C -0.196 4.196 17 C -0.130 4.130 18 C -0.167 4.167 19 C -0.215 4.215 20 C -0.223 4.223 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.140 0.860 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.058 4.898 -6.688 10.887 hybrid contribution 0.105 -0.096 0.703 0.718 sum -6.953 4.802 -5.985 10.355 Atomic orbital electron populations 1.21892 0.99735 0.99550 0.99575 1.21799 0.91129 1.00741 1.02918 1.19219 0.95273 0.89681 0.84680 0.98039 1.21257 0.91310 1.35647 1.04350 0.91874 1.24975 0.97924 0.95890 0.95942 1.69871 1.34731 1.39676 1.09618 0.86653 0.86138 0.78076 0.77042 1.20482 1.21573 1.20395 1.60755 1.38028 1.00885 1.31925 1.21382 0.93958 0.90450 0.95667 0.94878 1.21834 0.98284 0.96974 1.02510 1.21469 0.92127 0.98987 1.00455 1.22394 0.94543 1.03264 0.96493 1.23024 1.04035 0.93798 1.00663 1.22938 0.97484 0.98053 1.03861 0.94535 0.94057 0.94445 0.94177 0.88434 0.93179 0.85990 0.94727 0.90553 0.93246 0.91914 0.91475 0.88150 0.88711 0.89126 0.89352 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.64 37.16 0.36 -2.59 16 2 C -0.13 -3.03 5.33 -26.73 -0.14 -3.18 16 3 C 0.22 5.47 2.04 -68.86 -0.14 5.33 16 4 H 0.00 0.06 7.31 -51.93 -0.38 -0.32 16 5 C -0.49 -13.40 7.43 -34.44 -0.26 -13.65 16 6 H 0.06 1.76 7.07 -52.49 -0.37 1.39 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.79 11.32 55.43 0.63 -25.16 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -14.55 6.16 -100.95 -0.62 -15.17 16 14 C 0.10 1.82 2.63 -67.71 -0.18 1.64 16 15 H 0.03 0.68 7.34 -51.93 -0.38 0.30 16 16 C -0.14 -2.60 9.13 37.16 0.34 -2.26 16 17 C -0.09 -1.40 5.09 -26.73 -0.14 -1.54 16 18 C -0.15 -2.09 4.65 -90.62 -0.42 -2.52 16 19 C -0.18 -2.26 9.89 -26.69 -0.26 -2.52 16 20 C -0.19 -2.18 10.25 -26.69 -0.27 -2.45 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.66 6.62 -51.93 -0.34 0.32 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.10 2.61 5.99 -51.93 -0.31 2.30 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.32 6.32 4.81 -39.29 -0.19 6.14 16 28 H 0.03 0.55 8.14 -51.94 -0.42 0.13 16 29 H 0.08 1.67 6.26 -51.93 -0.33 1.34 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 33 H 0.10 1.54 8.08 -51.93 -0.42 1.12 16 34 H 0.09 1.18 8.03 -51.93 -0.42 0.76 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 290.68 15.07 4.38 4.38 Total: -1.00 -27.87 290.68 -8.33 -36.20 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.49 Total: 5.46 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -1.21 Total: -22.37 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.01 Total: -40.33 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.87 -8.33 -36.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069665847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.981 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds