Wall clock time and date at job start Sun Mar 29 2020 21:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47082 * 2 1 4 4 H 1.09001 * 109.47191 * 55.60366 * 3 2 1 5 5 C 1.50708 * 109.46722 * 175.59780 * 3 2 1 6 6 H 1.07998 * 119.99443 * 120.00496 * 5 3 2 7 7 C 1.37872 * 120.00051 * 299.72319 * 5 3 2 8 8 N 1.31519 * 120.00180 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99766 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46986 * 60.00275 * 9 7 5 11 11 H 1.48500 * 109.47159 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47330 * 300.00259 * 9 7 5 13 13 N 1.46894 * 109.47476 * 295.59842 * 3 2 1 14 14 C 1.46898 * 111.00169 * 150.16324 * 13 3 2 15 15 H 1.08997 * 109.46884 * 327.11897 * 14 13 3 16 16 C 1.53004 * 109.46912 * 87.11693 * 14 13 3 17 17 C 1.53000 * 109.47155 * 207.11514 * 14 13 3 18 18 C 1.53003 * 109.46818 * 63.45405 * 17 14 13 19 19 C 1.53003 * 117.49460 * 244.15898 * 18 17 14 20 20 C 1.53002 * 117.49358 * 175.50095 * 18 17 14 21 21 H 1.08998 * 109.47280 * 185.95152 * 1 2 3 22 22 H 1.09003 * 109.46824 * 305.94877 * 1 2 3 23 23 H 1.09000 * 109.47556 * 65.94647 * 1 2 3 24 24 H 1.09005 * 109.47024 * 240.00160 * 2 1 3 25 25 H 1.09004 * 109.47559 * 120.00416 * 2 1 3 26 26 H 0.96998 * 119.99406 * 179.97438 * 8 7 5 27 27 H 1.00903 * 110.99748 * 26.21152 * 13 3 2 28 28 H 1.08988 * 109.47084 * 180.02562 * 16 14 13 29 29 H 1.09006 * 109.47143 * 300.00545 * 16 14 13 30 30 H 1.09003 * 109.47173 * 59.99948 * 16 14 13 31 31 H 1.09000 * 109.47032 * 183.45194 * 17 14 13 32 32 H 1.08996 * 109.46934 * 303.45104 * 17 14 13 33 33 H 1.08990 * 115.54963 * 29.82895 * 18 17 14 34 34 H 1.08996 * 117.50172 * 0.02562 * 19 18 17 35 35 H 1.08996 * 117.49581 * 145.02484 * 19 18 17 36 36 H 1.09005 * 117.49354 * 214.97527 * 20 18 17 37 37 H 1.08997 * 117.50465 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6137 1.9786 0.8480 5 6 3.5431 1.4438 0.1091 6 1 4.1406 1.8911 -0.6714 7 6 4.1550 0.8791 1.2080 8 7 3.4271 0.3389 2.1608 9 14 6.0181 0.8814 1.3434 10 1 6.5131 2.2814 1.3371 11 1 6.4233 0.2184 2.6089 12 1 6.5991 0.1458 0.1917 13 7 1.6390 2.1037 -1.2490 14 6 1.4506 3.5461 -1.0441 15 1 1.0774 3.7241 -0.0356 16 6 2.7881 4.2662 -1.2275 17 6 0.4409 4.0783 -2.0630 18 6 -0.9197 3.4206 -1.8239 19 6 -1.4755 2.5243 -2.9324 20 6 -2.0957 3.9003 -2.6771 21 1 -0.3634 -1.0221 0.1066 22 1 -0.3633 0.6033 0.8320 23 1 -0.3634 0.4189 -0.9384 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.8577 -0.0587 2.9337 27 1 0.8062 1.6808 -1.6307 28 1 2.6484 5.3363 -1.0751 29 1 3.5075 3.8869 -0.5016 30 1 3.1614 4.0881 -2.2360 31 1 0.3471 5.1585 -1.9513 32 1 0.7849 3.8457 -3.0708 33 1 -1.1291 3.1350 -0.7932 34 1 -0.8718 2.4028 -3.8316 35 1 -2.0511 1.6492 -2.6307 36 1 -3.0790 3.9298 -2.2075 37 1 -1.9003 4.6847 -3.4083 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069665847.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:40 Heat of formation + Delta-G solvation = -11.995983 kcal Electronic energy + Delta-G solvation = -14766.589911 eV Core-core repulsion = 12543.182711 eV Total energy + Delta-G solvation = -2223.407200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.45925 -37.53891 -35.06349 -33.57453 -30.45839 -28.58171 -27.76741 -24.66362 -23.15612 -21.98778 -21.35707 -21.00318 -18.35099 -16.93397 -16.76468 -15.94060 -15.71764 -15.24741 -14.78625 -14.51636 -13.94910 -13.63763 -13.32138 -12.98922 -12.96238 -12.80257 -12.57060 -12.48701 -12.28968 -12.08004 -12.01018 -11.75785 -11.48826 -11.34219 -10.97486 -10.87555 -10.63181 -10.38152 -8.92498 -8.02359 -6.12537 1.42067 1.43427 1.50921 2.46063 2.96274 3.22074 3.68483 3.80092 4.02812 4.16232 4.29774 4.48589 4.50509 4.57429 4.69553 4.71784 4.77007 4.83643 4.96457 5.05716 5.06868 5.11269 5.15775 5.25250 5.31254 5.33043 5.39129 5.46623 5.59045 5.68167 5.80414 5.95738 6.42593 6.64163 7.01561 7.13723 7.55733 9.00787 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038614 B = 0.008872 C = 0.007582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.959085 B = 3155.168567 C = 3691.939001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.035 1.035 5 C -0.501 4.501 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.681 5.681 14 C 0.092 3.908 15 H 0.010 0.990 16 C -0.133 4.133 17 C -0.079 4.079 18 C -0.172 4.172 19 C -0.179 4.179 20 C -0.164 4.164 21 H 0.056 0.944 22 H 0.033 0.967 23 H 0.058 0.942 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.258 0.742 27 H 0.331 0.669 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.471 5.561 -8.157 13.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.118 3.882 4 H -0.018 1.018 5 C -0.540 4.540 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.315 5.315 14 C -0.018 4.018 15 H 0.028 0.972 16 C -0.191 4.191 17 C -0.117 4.117 18 C -0.190 4.190 19 C -0.216 4.216 20 C -0.201 4.201 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.151 0.849 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.806 5.543 -8.218 12.618 hybrid contribution 0.315 -0.259 1.167 1.236 sum -7.492 5.283 -7.051 11.566 Atomic orbital electron populations 1.21743 0.96393 1.00955 1.00406 1.21632 0.94143 0.99389 1.01043 1.18971 0.93994 0.90282 0.84918 1.01783 1.21522 0.92773 1.35433 1.04231 0.92750 1.25695 1.02107 0.95691 0.95723 1.70009 1.36231 1.40250 1.09957 0.85705 0.81176 0.78169 0.77111 1.20015 1.21142 1.19881 1.60664 1.38737 1.02248 1.29819 1.21457 0.95250 0.89140 0.95948 0.97181 1.21766 0.97235 0.98572 1.01554 1.21318 0.91458 0.99900 0.99015 1.22271 0.95118 1.05432 0.96211 1.23107 1.04014 0.94600 0.99897 1.23020 0.96805 0.97645 1.02583 0.92473 0.94796 0.92328 0.94608 0.91600 0.93288 0.84912 0.91921 0.94273 0.92679 0.90175 0.90914 0.89958 0.88348 0.88671 0.88134 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.64 71.98 0.69 -4.60 16 2 C -0.12 -5.96 5.33 30.59 0.16 -5.80 16 3 C 0.23 11.63 2.04 44.17 0.09 11.72 16 4 H -0.04 -2.04 7.31 -2.39 -0.02 -2.06 16 5 C -0.50 -28.23 7.43 25.60 0.19 -28.04 16 6 H 0.05 3.09 7.07 -2.91 -0.02 3.07 16 7 C 0.01 0.30 5.29 84.65 0.45 0.74 16 8 N -0.92 -54.34 11.32 21.45 0.24 -54.10 16 9 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 13 N -0.68 -29.06 6.16 -473.31 -2.92 -31.98 16 14 C 0.09 3.48 2.63 44.92 0.12 3.60 16 15 H 0.01 0.43 7.34 -2.39 -0.02 0.41 16 16 C -0.13 -4.97 9.13 71.98 0.66 -4.31 16 17 C -0.08 -2.24 5.09 30.60 0.16 -2.09 16 18 C -0.17 -4.51 4.65 -10.79 -0.05 -4.56 16 19 C -0.18 -4.05 9.89 30.62 0.30 -3.75 16 20 C -0.16 -3.29 10.25 30.62 0.31 -2.98 16 21 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.06 1.98 6.62 -2.39 -0.02 1.97 16 24 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.07 3.62 5.99 -2.38 -0.01 3.61 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.33 12.76 4.81 -89.69 -0.43 12.33 16 28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.04 1.73 6.26 -2.38 -0.01 1.71 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 1.99 7.88 -2.39 -0.02 1.98 16 33 H 0.08 2.47 8.08 -2.39 -0.02 2.45 16 34 H 0.10 2.16 8.03 -2.39 -0.02 2.14 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -60.81 290.68 3.02 -57.79 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.59 Total: 21.29 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 3.08 Total: -40.07 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.67 Total: -86.08 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -60.81 3.02 -57.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069665847.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.790 kcal (2) G-P(sol) polarization free energy of solvation -60.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds