Wall clock time and date at job start Sun Mar 29 2020 21:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 H 1.08997 * 109.46972 * 305.02328 * 3 2 1 5 5 C 1.50696 * 109.46933 * 185.01914 * 3 2 1 6 6 H 1.08001 * 119.99909 * 239.99614 * 5 3 2 7 7 C 1.37876 * 120.00051 * 60.00487 * 5 3 2 8 8 N 1.31522 * 120.00083 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00256 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46888 * 59.99520 * 9 7 5 11 11 H 1.48501 * 109.47209 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47075 * 299.99699 * 9 7 5 13 13 N 1.46898 * 109.46958 * 65.02001 * 3 2 1 14 14 C 1.46903 * 110.99906 * 206.29843 * 13 3 2 15 15 H 1.09003 * 109.46965 * 325.52657 * 14 13 3 16 16 C 1.52992 * 109.47519 * 85.53098 * 14 13 3 17 17 C 1.53003 * 109.46939 * 205.53451 * 14 13 3 18 18 C 1.52998 * 109.47340 * 64.99646 * 17 14 13 19 19 C 1.53000 * 117.49716 * 243.62220 * 18 17 14 20 20 C 1.53002 * 117.49680 * 174.99660 * 18 17 14 21 21 H 1.08999 * 109.47103 * 294.85103 * 1 2 3 22 22 H 1.09001 * 109.47282 * 54.84995 * 1 2 3 23 23 H 1.09001 * 109.47218 * 174.85375 * 1 2 3 24 24 H 1.09001 * 109.46774 * 240.00104 * 2 1 3 25 25 H 1.09000 * 109.47058 * 120.00178 * 2 1 3 26 26 H 0.96994 * 120.00341 * 180.02562 * 8 7 5 27 27 H 1.00897 * 111.00238 * 82.34355 * 13 3 2 28 28 H 1.09000 * 109.47510 * 174.90653 * 16 14 13 29 29 H 1.09003 * 109.47027 * 294.90629 * 16 14 13 30 30 H 1.09006 * 109.47207 * 54.90743 * 16 14 13 31 31 H 1.08998 * 109.46794 * 185.00004 * 17 14 13 32 32 H 1.09003 * 109.47220 * 304.99474 * 17 14 13 33 33 H 1.09005 * 115.55136 * 29.33167 * 18 17 14 34 34 H 1.08998 * 117.49801 * 359.97438 * 19 18 17 35 35 H 1.09001 * 117.49656 * 145.02882 * 19 18 17 36 36 H 1.08994 * 117.50122 * 214.97611 * 20 18 17 37 37 H 1.09000 * 117.49731 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6051 1.9816 -0.8416 5 6 3.5419 1.4442 -0.1243 6 1 4.1474 1.8888 0.6517 7 6 4.1429 0.8785 -1.2287 8 7 3.4055 0.3369 -2.1735 9 14 6.0045 0.8813 -1.3832 10 1 6.5974 0.1472 -0.2366 11 1 6.3969 0.2169 -2.6520 12 1 6.4990 2.2815 -1.3835 13 7 1.6518 2.0991 1.2554 14 6 1.5430 3.5532 1.0773 15 1 2.2927 3.8885 0.3605 16 6 0.1473 3.9001 0.5553 17 6 1.7733 4.2501 2.4197 18 6 3.2113 4.0053 2.8814 19 6 3.4128 3.2128 4.1746 20 6 3.6767 4.7198 4.1518 21 1 -0.3633 0.4319 0.9325 22 1 -0.3634 0.5916 -0.8403 23 1 -0.3634 -1.0235 -0.0922 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.8283 -0.0614 -2.9503 27 1 2.2980 1.8730 1.9966 28 1 0.0356 4.9833 0.5089 29 1 0.0169 3.4784 -0.4413 30 1 -0.6050 3.4857 1.2265 31 1 1.6053 5.3211 2.3066 32 1 1.0808 3.8500 3.1604 33 1 3.9432 3.8655 2.0858 34 1 2.5210 2.8662 4.6966 35 1 4.2774 2.5514 4.2299 36 1 4.7147 5.0496 4.1922 37 1 2.9585 5.3646 4.6584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069665850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:42 Heat of formation + Delta-G solvation = -15.857892 kcal Electronic energy + Delta-G solvation = -14753.319893 eV Core-core repulsion = 12529.745228 eV Total energy + Delta-G solvation = -2223.574664 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35177 -37.49083 -35.10059 -33.38960 -30.77845 -28.25563 -27.75951 -24.62222 -23.16951 -21.93802 -21.22888 -20.95878 -18.65261 -16.91924 -16.66483 -16.03563 -15.47432 -15.18680 -14.71171 -14.57278 -13.70681 -13.62899 -13.25688 -13.06960 -13.01737 -12.85858 -12.54712 -12.46493 -12.30396 -12.10963 -11.90454 -11.82897 -11.48061 -11.33671 -10.94572 -10.86960 -10.63939 -10.43076 -8.96082 -8.02952 -6.24984 1.36889 1.37423 1.44823 2.39654 2.97925 3.15659 3.72348 3.83107 4.04893 4.18332 4.30985 4.55608 4.63030 4.72402 4.75522 4.79270 4.81975 4.93518 4.97961 5.05348 5.11398 5.15092 5.24455 5.30243 5.32520 5.43427 5.45798 5.52297 5.58728 5.69723 5.82024 6.16037 6.26694 6.48127 6.92154 7.11730 7.46355 8.92695 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.011664 C = 0.008683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.628685 B = 2399.884184 C = 3223.812998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.224 3.776 4 H -0.003 1.003 5 C -0.553 4.553 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.674 5.674 14 C 0.085 3.915 15 H 0.010 0.990 16 C -0.128 4.128 17 C -0.074 4.074 18 C -0.170 4.170 19 C -0.179 4.179 20 C -0.165 4.165 21 H 0.058 0.942 22 H 0.029 0.971 23 H 0.042 0.958 24 H 0.058 0.942 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 6.576 9.569 11.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.015 0.985 5 C -0.593 4.593 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.304 5.304 14 C -0.025 4.025 15 H 0.028 0.972 16 C -0.186 4.186 17 C -0.112 4.112 18 C -0.188 4.188 19 C -0.216 4.216 20 C -0.202 4.202 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.271 6.379 9.296 11.739 hybrid contribution 2.202 -0.056 -0.788 2.339 sum -1.069 6.323 8.508 10.654 Atomic orbital electron populations 1.21530 0.96390 0.99374 1.00590 1.21365 0.94435 0.98648 0.99767 1.18904 0.91280 0.91314 0.87025 0.98492 1.22163 0.94235 1.37570 1.05284 0.93363 1.25648 1.01811 0.94996 0.95620 1.70003 1.36307 1.39002 1.09815 0.85806 0.81475 0.78110 0.77397 1.19744 1.20919 1.20186 1.60915 1.54024 1.07297 1.08176 1.21419 0.96170 0.88977 0.95941 0.97218 1.21708 0.96414 1.00574 0.99916 1.21253 0.93626 1.00354 0.95929 1.22270 0.98187 1.06731 0.91613 1.23045 1.03516 0.94571 1.00423 1.23011 1.02475 0.94759 0.99971 0.92319 0.95227 0.93882 0.92314 0.95549 0.93003 0.85222 0.91299 0.95329 0.91780 0.90231 0.90555 0.90790 0.87856 0.89625 0.88707 0.87263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.74 71.98 0.70 -4.31 16 2 C -0.10 -5.09 5.45 30.60 0.17 -4.92 16 3 C 0.22 11.34 1.78 44.17 0.08 11.42 16 4 H 0.00 -0.16 7.20 -2.39 -0.02 -0.18 16 5 C -0.55 -30.43 8.33 25.60 0.21 -30.21 16 6 H 0.05 2.63 7.72 -2.91 -0.02 2.61 16 7 C 0.02 1.06 5.29 84.65 0.45 1.50 16 8 N -0.91 -53.05 11.29 21.45 0.24 -52.81 16 9 Si 0.95 44.12 29.54 68.60 2.03 46.14 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.67 -28.18 5.61 -473.32 -2.65 -30.84 16 14 C 0.09 3.16 2.41 44.91 0.11 3.27 16 15 H 0.01 0.43 7.68 -2.39 -0.02 0.41 16 16 C -0.13 -4.23 9.38 71.98 0.68 -3.55 16 17 C -0.07 -2.14 5.08 30.59 0.16 -1.99 16 18 C -0.17 -5.05 4.69 -10.79 -0.05 -5.10 16 19 C -0.18 -4.66 9.95 30.60 0.30 -4.36 16 20 C -0.17 -3.82 10.25 30.60 0.31 -3.51 16 21 H 0.06 2.26 7.90 -2.39 -0.02 2.24 16 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 3.25 5.95 -2.39 -0.01 3.24 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.33 13.80 6.83 -89.70 -0.61 13.19 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.03 1.05 7.55 -2.39 -0.02 1.04 16 30 H 0.06 1.96 8.14 -2.38 -0.02 1.95 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 2.05 7.88 -2.39 -0.02 2.04 16 33 H 0.07 2.69 8.08 -2.38 -0.02 2.67 16 34 H 0.10 2.47 8.03 -2.39 -0.02 2.45 16 35 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -58.67 296.51 3.12 -55.55 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.40 Total: 23.72 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 3.11 Total: -41.76 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.41 Total: -83.65 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -58.67 3.12 -55.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069665850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.689 kcal (2) G-P(sol) polarization free energy of solvation -58.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds