Wall clock time and date at job start Sun Mar 29 2020 21:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 5 5 C 1.46898 * 110.99673 * 84.99841 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00046 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99809 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99912 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47123 * 90.00333 * 11 9 7 13 13 H 1.48506 * 109.46940 * 210.00455 * 11 9 7 14 14 H 1.48493 * 109.47121 * 329.99876 * 11 9 7 15 15 C 1.53004 * 109.47154 * 119.99832 * 2 1 3 16 16 C 1.54265 * 110.03301 * 57.91102 * 15 2 1 17 17 C 1.54967 * 104.15876 * 217.14061 * 16 15 2 18 18 C 1.54889 * 102.78050 * 37.88116 * 17 16 15 19 19 C 1.53877 * 110.03088 * 300.68946 * 15 2 1 20 20 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 22 22 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 23 23 H 1.00894 * 111.00528 * 208.95313 * 4 2 1 24 24 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 25 25 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 26 26 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 27 27 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 28 28 H 0.97004 * 119.99097 * 179.97438 * 10 9 7 29 29 H 1.09000 * 110.01600 * 179.30155 * 15 2 1 30 30 H 1.09003 * 110.48493 * 335.78176 * 16 15 2 31 31 H 1.08992 * 110.49062 * 98.42731 * 16 15 2 32 32 H 1.09004 * 110.71507 * 279.57042 * 17 16 15 33 33 H 1.08994 * 110.76888 * 156.22096 * 17 16 15 34 34 H 1.08995 * 110.48884 * 203.40857 * 18 17 16 35 35 H 1.08998 * 110.59537 * 80.81757 * 18 17 16 36 36 H 1.08999 * 110.03348 * 238.57046 * 19 15 2 37 37 H 1.08997 * 110.02986 * 0.02562 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6602 0.4055 -4.7514 8 1 2.3649 1.4380 -4.6356 9 6 3.0956 -0.0537 -5.9764 10 7 3.1518 0.7656 -7.0037 11 14 3.6055 -1.8395 -6.1768 12 1 2.4254 -2.6501 -6.5710 13 1 4.6495 -1.9412 -7.2282 14 1 4.1474 -2.3469 -4.8907 15 6 2.0400 -0.7212 1.2493 16 6 1.4903 -2.1620 1.2891 17 6 1.2111 -2.4199 2.7915 18 6 0.6714 -1.0525 3.2793 19 6 1.5200 -0.0160 2.5142 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 2.9174 -1.1205 -1.0287 24 1 2.7589 1.0461 -2.1182 25 1 1.0871 0.6163 -2.5525 26 1 3.5905 -0.9273 -3.3690 27 1 1.9185 -1.3566 -3.8029 28 1 3.4585 0.4424 -7.8654 29 1 3.1299 -0.7372 1.2520 30 1 0.5683 -2.2347 0.7121 31 1 2.2335 -2.8646 0.9124 32 1 2.1307 -2.6812 3.3152 33 1 0.4592 -3.1989 2.9168 34 1 0.8173 -0.9462 4.3542 35 1 -0.3831 -0.9439 3.0257 36 1 2.3576 0.3095 3.1313 37 1 0.9040 0.8398 2.2380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069805005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:29 Heat of formation + Delta-G solvation = -29.136812 kcal Electronic energy + Delta-G solvation = -14219.753792 eV Core-core repulsion = 11995.603311 eV Total energy + Delta-G solvation = -2224.150482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.08765 -35.72681 -33.07465 -31.29508 -28.89648 -28.34637 -27.57498 -24.15973 -21.81774 -20.76492 -20.16311 -18.71010 -16.72265 -16.14771 -15.60127 -14.75977 -14.27481 -14.23788 -13.68600 -13.32887 -12.92902 -12.54084 -12.09181 -11.70011 -11.64951 -11.26031 -11.17724 -11.06462 -11.04243 -10.97460 -10.59279 -10.40063 -10.25008 -9.99994 -9.74980 -9.59932 -9.19049 -8.51072 -7.85866 -6.02059 -4.00092 3.34785 3.41305 3.46514 4.43489 4.48568 4.61409 4.69932 4.89466 5.20344 5.32678 5.35985 5.42201 5.52137 5.63106 5.66178 5.73747 5.75681 5.87602 5.94422 6.01502 6.10798 6.16951 6.24193 6.28953 6.33977 6.37443 6.41546 6.66805 6.84826 7.20656 7.43367 7.68071 7.81823 7.98433 8.56284 9.02276 9.60631 11.11399 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058090 B = 0.005791 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.898220 B = 4834.337395 C = 5114.280479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.088 3.912 3 H 0.037 0.963 4 N -0.689 5.689 5 C 0.074 3.926 6 C -0.010 4.010 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.066 3.934 10 N -0.905 5.905 11 Si 0.883 3.117 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.265 1.265 15 C -0.094 4.094 16 C -0.115 4.115 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.120 4.120 20 H 0.063 0.937 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.334 0.666 24 H 0.020 0.980 25 H 0.063 0.937 26 H 0.012 0.988 27 H 0.020 0.980 28 H 0.263 0.737 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.575 -4.620 19.444 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 H 0.055 0.945 4 N -0.320 5.320 5 C -0.054 4.054 6 C -0.047 4.047 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.135 4.135 10 N -0.544 5.544 11 Si 0.711 3.289 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.113 4.113 16 C -0.152 4.152 17 C -0.165 4.165 18 C -0.160 4.160 19 C -0.158 4.158 20 H 0.082 0.918 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.151 0.849 24 H 0.038 0.962 25 H 0.082 0.918 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.147 -4.841 19.076 20.112 hybrid contribution 1.131 -0.248 -0.097 1.162 sum -3.016 -5.089 18.978 19.879 Atomic orbital electron populations 1.21892 0.95071 1.02159 1.00734 1.21530 0.95903 0.95427 0.89326 0.94476 1.60636 1.32860 1.34249 1.04249 1.21984 0.99999 0.93342 0.90110 1.19542 0.95700 0.96524 0.92981 1.21090 1.44142 0.97726 0.92935 0.91178 1.25011 0.95046 0.97626 0.95770 1.69927 1.47914 1.35369 1.01201 0.86724 0.78607 0.85645 0.77969 1.20251 1.21533 1.19008 1.21941 0.99518 0.95676 0.94124 1.22447 1.01981 0.95360 0.95431 1.22539 1.00366 0.96864 0.96720 1.22334 0.99574 0.95061 0.99042 1.22220 0.99281 0.98429 0.95894 0.91821 0.93054 0.92783 0.84885 0.96215 0.91844 0.96955 0.96139 0.92766 0.91593 0.90174 0.91915 0.92026 0.91965 0.92271 0.91730 0.92281 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.87 37.16 0.33 -1.56 16 2 C 0.09 1.25 2.32 -67.71 -0.16 1.09 16 3 H 0.04 0.56 7.80 -51.93 -0.40 0.15 16 4 N -0.69 -11.77 5.98 -106.72 -0.64 -12.40 16 5 C 0.07 1.53 5.42 -3.82 -0.02 1.51 16 6 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 7 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -28.37 13.96 55.43 0.77 -27.60 16 11 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 14 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 15 C -0.09 -1.10 2.65 -89.50 -0.24 -1.34 16 16 C -0.11 -1.31 5.88 -25.03 -0.15 -1.45 16 17 C -0.13 -1.21 6.91 -24.70 -0.17 -1.38 16 18 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 19 C -0.12 -1.22 5.91 -25.61 -0.15 -1.37 16 20 H 0.06 0.85 5.98 -51.93 -0.31 0.54 16 21 H 0.05 0.59 6.43 -51.93 -0.33 0.25 16 22 H 0.05 0.80 7.45 -51.93 -0.39 0.41 16 23 H 0.33 5.47 8.35 -39.29 -0.33 5.14 16 24 H 0.02 0.41 8.06 -51.93 -0.42 0.00 16 25 H 0.06 1.35 7.44 -51.93 -0.39 0.96 16 26 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 27 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 30 H 0.08 1.00 5.61 -51.93 -0.29 0.70 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.69 6.28 -51.93 -0.33 0.36 16 LS Contribution 283.82 15.07 4.28 4.28 Total: -1.00 -30.25 283.82 -8.03 -38.28 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.50 Total: -0.34 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.28 Total: -19.80 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.14 Total: -40.00 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.25 -8.03 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069805005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.148 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds