Wall clock time and date at job start Sun Mar 29 2020 21:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 N 1.46903 * 109.47500 * 239.99656 * 2 1 3 5 5 C 1.46898 * 110.99673 * 84.99841 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00046 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99809 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99912 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47123 * 90.00333 * 11 9 7 13 13 H 1.48506 * 109.46940 * 210.00455 * 11 9 7 14 14 H 1.48493 * 109.47121 * 329.99876 * 11 9 7 15 15 C 1.53004 * 109.47154 * 119.99832 * 2 1 3 16 16 C 1.54265 * 110.03301 * 57.91102 * 15 2 1 17 17 C 1.54967 * 104.15876 * 217.14061 * 16 15 2 18 18 C 1.54889 * 102.78050 * 37.88116 * 17 16 15 19 19 C 1.53877 * 110.03088 * 300.68946 * 15 2 1 20 20 H 1.08998 * 109.46692 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47047 * 300.00187 * 1 2 3 22 22 H 1.08996 * 109.46853 * 60.00246 * 1 2 3 23 23 H 1.00894 * 111.00528 * 208.95313 * 4 2 1 24 24 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 25 25 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 26 26 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 27 27 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 28 28 H 0.97004 * 119.99097 * 179.97438 * 10 9 7 29 29 H 1.09000 * 110.01600 * 179.30155 * 15 2 1 30 30 H 1.09003 * 110.48493 * 335.78176 * 16 15 2 31 31 H 1.08992 * 110.49062 * 98.42731 * 16 15 2 32 32 H 1.09004 * 110.71507 * 279.57042 * 17 16 15 33 33 H 1.08994 * 110.76888 * 156.22096 * 17 16 15 34 34 H 1.08995 * 110.48884 * 203.40857 * 18 17 16 35 35 H 1.08998 * 110.59537 * 80.81757 * 18 17 16 36 36 H 1.08999 * 110.03348 * 238.57046 * 19 15 2 37 37 H 1.08997 * 110.02986 * 0.02562 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5952 -0.5333 -3.5744 7 6 2.6602 0.4055 -4.7514 8 1 2.3649 1.4380 -4.6356 9 6 3.0956 -0.0537 -5.9764 10 7 3.1518 0.7656 -7.0037 11 14 3.6055 -1.8395 -6.1768 12 1 2.4254 -2.6501 -6.5710 13 1 4.6495 -1.9412 -7.2282 14 1 4.1474 -2.3469 -4.8907 15 6 2.0400 -0.7212 1.2493 16 6 1.4903 -2.1620 1.2891 17 6 1.2111 -2.4199 2.7915 18 6 0.6714 -1.0525 3.2793 19 6 1.5200 -0.0160 2.5142 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 2.9174 -1.1205 -1.0287 24 1 2.7589 1.0461 -2.1182 25 1 1.0871 0.6163 -2.5525 26 1 3.5905 -0.9273 -3.3690 27 1 1.9185 -1.3566 -3.8029 28 1 3.4585 0.4424 -7.8654 29 1 3.1299 -0.7372 1.2520 30 1 0.5683 -2.2347 0.7121 31 1 2.2335 -2.8646 0.9124 32 1 2.1307 -2.6812 3.3152 33 1 0.4592 -3.1989 2.9168 34 1 0.8173 -0.9462 4.3542 35 1 -0.3831 -0.9439 3.0257 36 1 2.3576 0.3095 3.1313 37 1 0.9040 0.8398 2.2380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069805005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:29 Heat of formation + Delta-G solvation = -48.079433 kcal Electronic energy + Delta-G solvation = -14220.575206 eV Core-core repulsion = 11995.603311 eV Total energy + Delta-G solvation = -2224.971895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.07761 -37.10465 -35.05227 -32.97019 -30.25941 -29.43805 -28.54135 -26.00063 -23.00327 -22.29806 -21.27098 -19.74834 -18.93134 -17.23301 -16.64900 -16.30040 -15.91976 -15.48305 -14.98835 -14.67941 -14.51980 -14.15150 -13.52869 -13.08720 -12.90387 -12.68793 -12.58591 -12.22484 -12.08829 -11.86766 -11.79537 -11.76325 -11.50941 -11.42010 -11.29825 -11.17250 -11.10374 -10.77843 -9.29206 -8.31103 -6.35896 1.36905 1.38094 1.51005 2.36106 3.04526 3.25275 3.74537 3.81837 3.90850 4.29159 4.32194 4.47737 4.48938 4.56444 4.66143 4.78086 4.79131 4.85195 4.92116 4.93889 4.95547 5.08065 5.16225 5.21395 5.28717 5.30582 5.37121 5.47501 5.50377 5.53799 5.62840 5.69408 6.19854 6.26434 6.57186 6.73230 7.29165 8.85771 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058090 B = 0.005791 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.898220 B = 4834.337395 C = 5114.280479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 H 0.029 0.971 4 N -0.686 5.686 5 C 0.088 3.912 6 C -0.003 4.003 7 C -0.536 4.536 8 H 0.030 0.970 9 C 0.006 3.994 10 N -0.951 5.951 11 Si 0.956 3.044 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.247 1.247 15 C -0.090 4.090 16 C -0.116 4.116 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.119 4.119 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.034 0.966 23 H 0.340 0.660 24 H 0.011 0.989 25 H 0.052 0.948 26 H 0.019 0.981 27 H 0.021 0.979 28 H 0.267 0.733 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -6.464 21.373 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 H 0.047 0.953 4 N -0.317 5.317 5 C -0.041 4.041 6 C -0.041 4.041 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.191 4.191 10 N -0.592 5.592 11 Si 0.779 3.221 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.171 1.171 15 C -0.109 4.109 16 C -0.153 4.153 17 C -0.160 4.160 18 C -0.157 4.157 19 C -0.157 4.157 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.053 0.947 23 H 0.158 0.842 24 H 0.030 0.970 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.024 -6.682 21.034 22.433 hybrid contribution 1.062 0.424 -0.689 1.335 sum -2.962 -6.257 20.345 21.490 Atomic orbital electron populations 1.21867 0.94392 1.02320 1.00884 1.21635 0.96404 0.95070 0.89194 0.95334 1.60565 1.33251 1.33508 1.04404 1.21640 0.98880 0.93193 0.90369 1.19425 0.96156 0.95737 0.92751 1.21420 1.43978 0.96932 0.95078 0.95208 1.26015 0.94931 1.02968 0.95216 1.70075 1.49135 1.37983 1.01996 0.85571 0.78602 0.79109 0.78796 1.19233 1.20828 1.17051 1.21911 0.99472 0.95943 0.93548 1.22428 1.01222 0.94842 0.96827 1.22521 1.00976 0.97397 0.95151 1.22335 0.99383 0.94262 0.99755 1.22216 0.99776 0.98519 0.95164 0.91637 0.90848 0.94711 0.84223 0.97030 0.92921 0.96265 0.96039 0.92400 0.91651 0.91258 0.92372 0.91387 0.91173 0.90834 0.91567 0.91416 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.87 71.98 0.64 -2.88 16 2 C 0.09 2.36 2.32 44.92 0.10 2.46 16 3 H 0.03 0.84 7.80 -2.39 -0.02 0.82 16 4 N -0.69 -22.74 5.98 -491.55 -2.94 -25.68 16 5 C 0.09 3.67 5.42 86.31 0.47 4.14 16 6 C 0.00 -0.14 4.30 29.85 0.13 -0.01 16 7 C -0.54 -31.94 9.66 25.60 0.25 -31.69 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.92 16 9 C 0.01 0.33 5.47 84.65 0.46 0.79 16 10 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 11 Si 0.96 45.39 27.47 68.60 1.88 47.27 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 15 C -0.09 -1.94 2.65 -10.07 -0.03 -1.97 16 16 C -0.12 -2.39 5.88 31.70 0.19 -2.21 16 17 C -0.12 -1.99 6.91 31.91 0.22 -1.77 16 18 C -0.12 -1.83 6.83 31.67 0.22 -1.61 16 19 C -0.12 -2.10 5.91 31.32 0.19 -1.92 16 20 H 0.06 1.66 5.98 -2.39 -0.01 1.64 16 21 H 0.07 1.54 6.43 -2.39 -0.02 1.52 16 22 H 0.03 1.01 7.45 -2.39 -0.02 0.99 16 23 H 0.34 10.61 8.35 -89.70 -0.75 9.86 16 24 H 0.01 0.49 8.06 -2.39 -0.02 0.47 16 25 H 0.05 2.28 7.44 -2.39 -0.02 2.27 16 26 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 27 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.07 1.43 8.12 -2.39 -0.02 1.41 16 30 H 0.07 1.59 5.61 -2.39 -0.01 1.58 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.20 6.28 -2.39 -0.02 1.18 16 Total: -1.00 -65.12 283.82 2.29 -62.82 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.22 Total: 12.78 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 2.83 Total: -36.66 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -2.64 Total: -86.21 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.88 Total: 47.27 kcal Total: -65.12 2.29 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069805005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.742 kcal (2) G-P(sol) polarization free energy of solvation -65.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds