Wall clock time and date at job start Sun Mar 29 2020 21:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00362 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99850 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47052 * 89.99717 * 11 9 7 13 13 H 1.48495 * 109.47307 * 209.99656 * 11 9 7 14 14 H 1.48500 * 109.47143 * 330.00164 * 11 9 7 15 15 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 16 16 C 1.54270 * 110.03335 * 177.16901 * 15 2 1 17 17 C 1.54888 * 104.19615 * 217.10866 * 16 15 2 18 18 C 1.54889 * 102.75114 * 37.93788 * 17 16 15 19 19 C 1.53874 * 110.03307 * 60.00136 * 15 2 1 20 20 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 22 22 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 23 23 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 24 24 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 25 25 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 26 26 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 27 27 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 28 28 H 0.96994 * 119.99814 * 180.02562 * 10 9 7 29 29 H 1.08998 * 110.01929 * 298.60431 * 15 2 1 30 30 H 1.09008 * 110.48271 * 335.78350 * 16 15 2 31 31 H 1.08993 * 110.49024 * 98.42719 * 16 15 2 32 32 H 1.09005 * 110.75574 * 279.62765 * 17 16 15 33 33 H 1.09005 * 110.91569 * 156.32994 * 17 16 15 34 34 H 1.08996 * 110.49049 * 203.37789 * 18 17 16 35 35 H 1.09008 * 110.59429 * 80.79109 * 18 17 16 36 36 H 1.08999 * 110.03452 * 238.56972 * 19 15 2 37 37 H 1.09007 * 110.03090 * 359.95340 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6600 0.4058 4.7515 8 1 2.3648 1.4382 4.6356 9 6 3.0954 -0.0534 5.9765 10 7 3.1516 0.7658 7.0038 11 14 3.6040 -1.8396 6.1774 12 1 5.0543 -1.9768 5.8891 13 1 3.3326 -2.2779 7.5700 14 1 2.8295 -2.6841 5.2328 15 6 2.0399 -0.7213 -1.2492 16 6 3.5809 -0.6672 -1.2986 17 6 3.9068 -0.4940 -2.8029 18 6 2.7854 0.4578 -3.2883 19 6 1.5342 -0.0061 -2.5143 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.4494 -1.4979 1.4101 24 1 2.7588 1.0462 2.1182 25 1 1.0870 0.6163 2.5526 26 1 1.9183 -1.3565 3.8030 27 1 3.5903 -0.9272 3.3692 28 1 3.4583 0.4428 7.8654 29 1 1.7020 -1.7576 -1.2458 30 1 3.9512 0.1843 -0.7275 31 1 4.0076 -1.5960 -0.9203 32 1 3.8532 -1.4507 -3.3224 33 1 4.8871 -0.0369 -2.9385 34 1 2.6316 0.3499 -4.3619 35 1 3.0259 1.4917 -3.0402 36 1 0.9514 -0.6954 -3.1252 37 1 0.9247 0.8545 -2.2382 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069805009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:31 Heat of formation + Delta-G solvation = -33.501182 kcal Electronic energy + Delta-G solvation = -14185.593401 eV Core-core repulsion = 11961.253666 eV Total energy + Delta-G solvation = -2224.339735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.82613 -35.88461 -33.15641 -31.38370 -28.95229 -28.29944 -27.20842 -24.06105 -21.66160 -20.60031 -20.43081 -19.13488 -16.77764 -15.86074 -15.36632 -14.66916 -14.35684 -13.88954 -13.54213 -13.23855 -13.07362 -12.64881 -12.43806 -12.09329 -11.40174 -11.12341 -11.08237 -11.03064 -10.95220 -10.84859 -10.61918 -10.50672 -10.25570 -10.10883 -9.76707 -9.58026 -9.19743 -8.51366 -7.81934 -6.02273 -4.00347 3.34601 3.41205 3.46329 4.48345 4.49059 4.71618 4.74054 4.98355 5.17862 5.32507 5.40173 5.47091 5.53194 5.68783 5.70950 5.72052 5.79996 5.91719 5.94983 6.00819 6.07447 6.15831 6.22367 6.30173 6.34929 6.44937 6.50396 6.62772 6.82668 7.20177 7.43333 7.67642 7.81608 7.97919 8.55982 9.02069 9.60425 11.11187 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047464 B = 0.005978 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.782005 B = 4682.592469 C = 4896.182031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.074 0.926 4 N -0.688 5.688 5 C 0.075 3.925 6 C -0.010 4.010 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.067 3.933 10 N -0.905 5.905 11 Si 0.883 3.117 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.265 1.265 15 C -0.078 4.078 16 C -0.103 4.103 17 C -0.130 4.130 18 C -0.124 4.124 19 C -0.122 4.122 20 H 0.053 0.947 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.334 0.666 24 H 0.062 0.938 25 H 0.020 0.980 26 H 0.012 0.988 27 H 0.020 0.980 28 H 0.263 0.737 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.659 -3.232 -18.946 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.022 4.022 3 H 0.092 0.908 4 N -0.318 5.318 5 C -0.054 4.054 6 C -0.048 4.048 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.134 4.134 10 N -0.544 5.544 11 Si 0.710 3.290 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.098 4.098 16 C -0.141 4.141 17 C -0.167 4.167 18 C -0.162 4.162 19 C -0.160 4.160 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.151 0.849 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.030 0.970 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.948 -3.132 -18.901 19.258 hybrid contribution -0.739 -0.752 0.537 1.183 sum -2.687 -3.884 -18.364 18.962 Atomic orbital electron populations 1.22568 0.98025 1.01784 1.01907 1.21651 0.91877 0.97872 0.90800 0.90814 1.60678 1.56518 1.10182 1.04375 1.21954 0.98600 0.95066 0.89745 1.19541 0.96337 0.96173 0.92716 1.21089 1.44179 0.97725 0.92905 0.91176 1.25009 0.95031 0.97600 0.95794 1.69918 1.47880 1.35362 1.01252 0.86730 0.79394 0.85775 0.77078 1.20250 1.21537 1.19007 1.21728 0.95882 0.99083 0.93067 1.22220 0.94857 1.02435 0.94572 1.22557 0.98062 0.99033 0.97058 1.22351 0.95440 0.99406 0.99000 1.22262 0.97483 1.00050 0.96213 0.92787 0.92601 0.92366 0.84891 0.91958 0.96131 0.96960 0.96151 0.92760 0.91525 0.91346 0.91640 0.92054 0.92029 0.92335 0.91846 0.92299 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 8.90 37.15 0.33 -1.98 16 2 C 0.09 1.23 1.88 -67.72 -0.13 1.10 16 3 H 0.07 1.10 7.77 -51.93 -0.40 0.69 16 4 N -0.69 -11.59 5.94 -106.73 -0.63 -12.22 16 5 C 0.07 1.53 5.42 -3.83 -0.02 1.50 16 6 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 11 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 15 C -0.08 -0.95 2.71 -89.50 -0.24 -1.19 16 16 C -0.10 -1.30 6.07 -25.07 -0.15 -1.45 16 17 C -0.13 -1.35 6.91 -24.74 -0.17 -1.52 16 18 C -0.12 -1.22 6.83 -25.07 -0.17 -1.39 16 19 C -0.12 -1.26 5.91 -25.61 -0.15 -1.41 16 20 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 21 H 0.05 0.77 7.45 -51.93 -0.39 0.38 16 22 H 0.06 0.63 6.47 -51.93 -0.34 0.30 16 23 H 0.33 5.43 8.47 -39.29 -0.33 5.09 16 24 H 0.06 1.31 8.06 -51.93 -0.42 0.89 16 25 H 0.02 0.42 7.44 -51.93 -0.39 0.04 16 26 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 27 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.96 7.84 -51.92 -0.41 0.56 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.66 6.33 -51.93 -0.33 0.33 16 LS Contribution 288.20 15.07 4.34 4.34 Total: -1.00 -30.03 288.20 -8.18 -38.21 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.73 Total: -0.04 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -1.26 Total: -20.28 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.14 Total: -39.77 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.03 -8.18 -38.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069805009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.706 kcal (2) G-P(sol) polarization free energy of solvation -30.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds