Wall clock time and date at job start Sun Mar 29 2020 21:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00362 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99850 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47052 * 89.99717 * 11 9 7 13 13 H 1.48495 * 109.47307 * 209.99656 * 11 9 7 14 14 H 1.48500 * 109.47143 * 330.00164 * 11 9 7 15 15 C 1.52998 * 109.47083 * 239.99708 * 2 1 3 16 16 C 1.54270 * 110.03335 * 177.16901 * 15 2 1 17 17 C 1.54888 * 104.19615 * 217.10866 * 16 15 2 18 18 C 1.54889 * 102.75114 * 37.93788 * 17 16 15 19 19 C 1.53874 * 110.03307 * 60.00136 * 15 2 1 20 20 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 22 22 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 23 23 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 24 24 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 25 25 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 26 26 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 27 27 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 28 28 H 0.96994 * 119.99814 * 180.02562 * 10 9 7 29 29 H 1.08998 * 110.01929 * 298.60431 * 15 2 1 30 30 H 1.09008 * 110.48271 * 335.78350 * 16 15 2 31 31 H 1.08993 * 110.49024 * 98.42719 * 16 15 2 32 32 H 1.09005 * 110.75574 * 279.62765 * 17 16 15 33 33 H 1.09005 * 110.91569 * 156.32994 * 17 16 15 34 34 H 1.08996 * 110.49049 * 203.37789 * 18 17 16 35 35 H 1.09008 * 110.59429 * 80.79109 * 18 17 16 36 36 H 1.08999 * 110.03452 * 238.56972 * 19 15 2 37 37 H 1.09007 * 110.03090 * 359.95340 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6600 0.4058 4.7515 8 1 2.3648 1.4382 4.6356 9 6 3.0954 -0.0534 5.9765 10 7 3.1516 0.7658 7.0038 11 14 3.6040 -1.8396 6.1774 12 1 5.0543 -1.9768 5.8891 13 1 3.3326 -2.2779 7.5700 14 1 2.8295 -2.6841 5.2328 15 6 2.0399 -0.7213 -1.2492 16 6 3.5809 -0.6672 -1.2986 17 6 3.9068 -0.4940 -2.8029 18 6 2.7854 0.4578 -3.2883 19 6 1.5342 -0.0061 -2.5143 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.4494 -1.4979 1.4101 24 1 2.7588 1.0462 2.1182 25 1 1.0870 0.6163 2.5526 26 1 1.9183 -1.3565 3.8030 27 1 3.5903 -0.9272 3.3692 28 1 3.4583 0.4428 7.8654 29 1 1.7020 -1.7576 -1.2458 30 1 3.9512 0.1843 -0.7275 31 1 4.0076 -1.5960 -0.9203 32 1 3.8532 -1.4507 -3.3224 33 1 4.8871 -0.0369 -2.9385 34 1 2.6316 0.3499 -4.3619 35 1 3.0259 1.4917 -3.0402 36 1 0.9514 -0.6954 -3.1252 37 1 0.9247 0.8545 -2.2382 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069805009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:30 Heat of formation + Delta-G solvation = -52.154828 kcal Electronic energy + Delta-G solvation = -14186.402284 eV Core-core repulsion = 11961.253666 eV Total energy + Delta-G solvation = -2225.148618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85356 -37.21485 -35.12930 -33.09008 -30.34346 -29.41377 -28.19485 -25.90609 -22.84637 -22.35701 -21.35812 -20.18618 -18.97614 -16.92653 -16.49169 -16.26845 -16.01863 -15.25889 -14.95521 -14.53467 -14.33651 -14.10892 -13.83766 -13.36154 -13.09111 -12.88131 -12.29773 -12.19600 -12.02290 -11.81661 -11.77792 -11.74824 -11.56348 -11.43953 -11.39804 -11.31051 -11.06178 -10.77964 -9.21222 -8.30967 -6.35654 1.36831 1.37902 1.50804 2.36060 3.04695 3.28205 3.77484 3.85878 3.98024 4.22979 4.35913 4.42313 4.49024 4.57305 4.67172 4.75673 4.81259 4.84066 4.92393 4.97148 4.99997 5.02608 5.16129 5.16363 5.26115 5.30702 5.36545 5.50265 5.52635 5.55873 5.61488 5.66172 6.20643 6.27271 6.59087 6.73855 7.29424 8.85908 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047464 B = 0.005978 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.782005 B = 4682.592469 C = 4896.182031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.088 3.912 3 H 0.060 0.940 4 N -0.687 5.687 5 C 0.090 3.910 6 C -0.003 4.003 7 C -0.535 4.535 8 H 0.030 0.970 9 C 0.006 3.994 10 N -0.951 5.951 11 Si 0.955 3.045 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.247 1.247 15 C -0.074 4.074 16 C -0.107 4.107 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.118 4.118 20 H 0.063 0.937 21 H 0.038 0.962 22 H 0.078 0.922 23 H 0.340 0.660 24 H 0.049 0.951 25 H 0.014 0.986 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.267 0.733 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -5.118 -20.909 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.022 4.022 3 H 0.079 0.921 4 N -0.317 5.317 5 C -0.039 4.039 6 C -0.041 4.041 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.191 4.191 10 N -0.592 5.592 11 Si 0.779 3.221 12 H -0.193 1.193 13 H -0.208 1.208 14 H -0.170 1.170 15 C -0.093 4.093 16 C -0.145 4.145 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.156 4.156 20 H 0.082 0.918 21 H 0.057 0.943 22 H 0.097 0.903 23 H 0.158 0.842 24 H 0.068 0.932 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.250 -5.015 -20.894 21.605 hybrid contribution -0.657 -0.068 1.137 1.315 sum -2.907 -5.083 -19.757 20.606 Atomic orbital electron populations 1.22495 0.96571 1.02500 1.02103 1.21726 0.93039 0.97199 0.90244 0.92132 1.60600 1.57438 1.09831 1.03811 1.21592 0.97664 0.94821 0.89826 1.19425 0.96584 0.95571 0.92520 1.21425 1.43959 0.96958 0.95021 0.95170 1.26008 0.94925 1.02922 0.95258 1.70067 1.49135 1.37964 1.02041 0.85583 0.79468 0.79458 0.77637 1.19287 1.20836 1.17039 1.21695 0.95425 0.99259 0.92903 1.22207 0.95303 1.00948 0.96041 1.22535 0.98578 0.99855 0.95303 1.22360 0.94782 0.98943 0.99998 1.22249 0.97839 1.00228 0.95328 0.91779 0.94259 0.90334 0.84178 0.93206 0.96760 0.96259 0.96149 0.92408 0.91109 0.93516 0.92608 0.90984 0.91727 0.90563 0.92255 0.90743 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 8.90 71.98 0.64 -3.49 16 2 C 0.09 2.34 1.88 44.91 0.08 2.42 16 3 H 0.06 1.78 7.77 -2.39 -0.02 1.76 16 4 N -0.69 -22.48 5.94 -491.59 -2.92 -25.40 16 5 C 0.09 3.71 5.42 86.30 0.47 4.17 16 6 C 0.00 -0.16 4.30 29.85 0.13 -0.03 16 7 C -0.54 -31.83 9.66 25.60 0.25 -31.59 16 8 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 9 C 0.01 0.34 5.47 84.65 0.46 0.80 16 10 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 11 Si 0.96 45.38 27.47 68.60 1.88 47.27 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 15 C -0.07 -1.64 2.71 -10.07 -0.03 -1.67 16 16 C -0.11 -2.58 6.07 31.67 0.19 -2.39 16 17 C -0.13 -2.35 6.91 31.88 0.22 -2.13 16 18 C -0.12 -2.09 6.83 31.67 0.22 -1.88 16 19 C -0.12 -2.10 5.91 31.32 0.19 -1.92 16 20 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 21 H 0.04 1.04 7.45 -2.39 -0.02 1.02 16 22 H 0.08 1.51 6.47 -2.39 -0.02 1.49 16 23 H 0.34 10.47 8.47 -89.69 -0.76 9.71 16 24 H 0.05 2.15 8.06 -2.39 -0.02 2.13 16 25 H 0.01 0.60 7.44 -2.39 -0.02 0.58 16 26 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 27 H 0.02 0.98 7.57 -2.39 -0.02 0.97 16 28 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.31 7.84 -2.38 -0.02 1.29 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.17 6.33 -2.38 -0.02 1.16 16 Total: -1.00 -64.98 288.20 2.28 -62.70 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.20 Total: 13.61 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 2.82 Total: -37.68 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -2.62 Total: -85.90 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.27 kcal Total: -64.98 2.28 -62.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069805009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.550 kcal (2) G-P(sol) polarization free energy of solvation -64.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds