Wall clock time and date at job start Sun Mar 29 2020 21:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.57294 * 2 1 4 4 C 1.54522 * 109.56914 * 239.75183 * 2 1 3 5 5 C 1.45878 * 111.66669 * 162.94612 * 4 2 1 6 6 C 1.53982 * 112.66600 * 61.50067 * 5 4 2 7 7 N 1.44301 * 108.31644 * 278.59845 * 6 5 4 8 8 C 1.46901 * 110.99947 * 221.34620 * 7 6 5 9 9 C 1.53000 * 109.46769 * 66.05077 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00114 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00636 * 14 12 10 16 16 H 1.48494 * 109.47178 * 210.00332 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00579 * 14 12 10 18 18 C 1.47948 * 113.64939 * 95.39465 * 7 6 5 19 19 C 1.50536 * 109.56803 * 120.37724 * 2 1 3 20 20 H 1.08998 * 109.47638 * 180.24391 * 1 2 3 21 21 H 1.09001 * 109.47082 * 300.25036 * 1 2 3 22 22 H 1.09003 * 109.46819 * 60.24487 * 1 2 3 23 23 H 1.09000 * 109.04052 * 42.38923 * 4 2 1 24 24 H 1.08994 * 108.98417 * 283.46727 * 4 2 1 25 25 H 1.09005 * 108.84652 * 300.67750 * 5 4 2 26 26 H 1.09001 * 108.84444 * 182.32295 * 5 4 2 27 27 H 1.08999 * 109.69708 * 158.88859 * 6 5 4 28 28 H 1.08996 * 109.72476 * 38.32556 * 6 5 4 29 29 H 1.09002 * 109.47401 * 306.04784 * 8 7 6 30 30 H 1.09001 * 109.46874 * 186.04797 * 8 7 6 31 31 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 32 32 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 33 33 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 34 34 H 1.08997 * 108.71367 * 79.13503 * 18 7 6 35 35 H 1.09001 * 108.71213 * 197.14842 * 18 7 6 36 36 H 1.08997 * 108.78838 * 332.45256 * 19 2 1 37 37 H 1.09002 * 108.79211 * 90.78709 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0476 -0.7334 -1.2577 5 6 3.4492 -0.4269 -1.5214 6 6 4.3788 -0.8689 -0.3762 7 7 4.3378 0.1389 0.6558 8 6 5.6788 0.3895 1.2006 9 6 6.5608 1.0136 0.1173 10 6 7.9364 1.2713 0.6763 11 1 8.1593 1.0151 1.7015 12 6 8.9106 1.8331 -0.1214 13 7 8.6392 2.1447 -1.3700 14 14 10.6155 2.1532 0.5717 15 1 11.4720 0.9605 0.3497 16 1 11.2152 3.3273 -0.1115 17 1 10.5146 2.4260 2.0280 18 6 3.3732 -0.1584 1.7375 19 6 2.0342 -0.7173 1.2237 20 1 -0.3634 -1.0276 0.0044 21 1 -0.3633 0.5177 0.8877 22 1 -0.3633 0.5100 -0.8922 23 1 1.4496 -0.4306 -2.1173 24 1 1.9402 -1.8081 -1.1109 25 1 3.5536 0.6486 -1.6644 26 1 3.7540 -0.9330 -2.4375 27 1 5.3979 -0.9715 -0.7491 28 1 4.0378 -1.8222 0.0274 29 1 6.1190 -0.5518 1.5299 30 1 5.6053 1.0721 2.0472 31 1 6.6343 0.3310 -0.7293 32 1 6.1207 1.9548 -0.2120 33 1 9.3247 2.5396 -1.9313 34 1 3.8199 -0.8871 2.4139 35 1 3.1788 0.7583 2.2943 36 1 1.2897 -0.6278 2.0147 37 1 2.1651 -1.7724 0.9832 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070158186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:35 Heat of formation + Delta-G solvation = -22.757950 kcal Electronic energy + Delta-G solvation = -14558.283308 eV Core-core repulsion = 12334.409434 eV Total energy + Delta-G solvation = -2223.873873 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.98575 -35.39033 -32.89236 -32.33372 -30.08611 -27.70429 -25.68574 -23.99818 -22.96388 -20.50668 -19.92236 -19.04619 -16.49240 -15.48547 -15.08727 -14.53143 -14.29857 -14.02252 -13.44239 -13.13899 -12.92498 -12.57731 -12.24772 -11.99073 -11.86114 -11.19196 -11.03670 -10.88254 -10.76409 -10.45254 -10.33153 -10.26383 -10.09784 -10.06823 -9.72895 -9.29862 -9.07027 -8.29675 -7.48027 -5.96355 -3.98545 3.33837 3.40035 3.43450 4.41504 4.59747 4.85212 5.04721 5.08390 5.38851 5.39783 5.49935 5.59144 5.68971 5.75206 5.85300 5.90593 5.99720 6.08365 6.13755 6.18264 6.30271 6.37024 6.43851 6.49442 6.55296 6.66237 6.69585 6.86706 7.04846 7.60814 7.79447 7.88433 8.02488 8.15858 8.48233 9.09006 9.64842 11.14994 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060226 B = 0.006348 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.805910 B = 4409.887327 C = 4654.210577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.082 0.918 4 C -0.104 4.104 5 C -0.116 4.116 6 C 0.064 3.936 7 N -0.548 5.548 8 C 0.067 3.933 9 C 0.028 3.972 10 C -0.522 4.522 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.062 3.938 19 C -0.111 4.111 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.017 0.983 30 H 0.057 0.943 31 H 0.018 0.982 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.496 -5.777 2.357 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.101 0.899 4 C -0.141 4.141 5 C -0.154 4.154 6 C -0.065 4.065 7 N -0.273 5.273 8 C -0.060 4.060 9 C -0.009 4.009 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.065 4.065 19 C -0.149 4.149 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.579 -5.301 1.995 14.713 hybrid contribution 1.279 -0.555 0.723 1.571 sum -12.300 -5.856 2.718 13.892 Atomic orbital electron populations 1.21901 0.95992 1.01075 1.01261 1.20885 0.94062 1.01105 0.94454 0.89926 1.20598 0.96958 0.99303 0.97278 1.20477 0.94383 1.02964 0.97613 1.21779 1.00263 0.91947 0.92508 1.60803 1.08889 1.45123 1.12460 1.22315 0.86161 0.98177 0.99329 1.19119 0.92455 0.96323 0.92985 1.21212 0.96261 1.40823 0.97765 0.92875 1.24985 0.98739 0.95677 0.94870 1.69972 1.33797 1.43040 1.06432 0.86612 0.84580 0.77760 0.79144 1.20740 1.21213 1.19912 1.22341 0.92062 0.99130 0.93011 1.21438 0.96177 0.99550 0.97762 0.93272 0.93038 0.92956 0.92789 0.93232 0.90874 0.92845 0.90377 0.95331 0.96490 0.92417 0.96404 0.95763 0.93040 0.95874 0.91684 0.92070 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.91 37.16 0.33 -1.18 16 2 C -0.09 -1.10 2.42 -91.05 -0.22 -1.32 16 3 H 0.08 1.22 7.79 -51.93 -0.40 0.82 16 4 C -0.10 -1.35 4.74 -29.30 -0.14 -1.49 16 5 C -0.12 -1.81 5.37 -29.59 -0.16 -1.97 16 6 C 0.06 1.12 5.10 -4.70 -0.02 1.09 16 7 N -0.55 -10.21 4.01 -234.63 -0.94 -11.15 16 8 C 0.07 1.45 4.75 -3.82 -0.02 1.43 16 9 C 0.03 0.75 4.93 -27.88 -0.14 0.62 16 10 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 14 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.06 0.96 5.38 -2.76 -0.01 0.95 16 19 C -0.11 -1.43 4.83 -27.48 -0.13 -1.56 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.05 0.50 8.10 -51.93 -0.42 0.08 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.65 8.02 -51.93 -0.42 0.23 16 24 H 0.05 0.61 7.58 -51.93 -0.39 0.22 16 25 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 1.55 5.87 -51.93 -0.30 1.25 16 28 H 0.03 0.46 6.79 -51.93 -0.35 0.11 16 29 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.06 1.24 8.04 -51.93 -0.42 0.83 16 31 H 0.02 0.49 6.39 -51.93 -0.33 0.16 16 32 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.02 0.35 8.02 -51.93 -0.42 -0.06 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 37 H 0.05 0.69 6.65 -51.93 -0.35 0.34 16 LS Contribution 283.06 15.07 4.27 4.27 Total: -1.00 -29.54 283.06 -8.58 -38.13 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -6.70 Total: -4.53 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.93 Total: -17.14 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.20 Total: -37.55 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.54 -8.58 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070158186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.370 kcal (2) G-P(sol) polarization free energy of solvation -29.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds