Wall clock time and date at job start Sun Mar 29 2020 21:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.57294 * 2 1 4 4 C 1.54522 * 109.56914 * 239.75183 * 2 1 3 5 5 C 1.45878 * 111.66669 * 162.94612 * 4 2 1 6 6 C 1.53982 * 112.66600 * 61.50067 * 5 4 2 7 7 N 1.44301 * 108.31644 * 278.59845 * 6 5 4 8 8 C 1.46901 * 110.99947 * 221.34620 * 7 6 5 9 9 C 1.53000 * 109.46769 * 66.05077 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00114 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00636 * 14 12 10 16 16 H 1.48494 * 109.47178 * 210.00332 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00579 * 14 12 10 18 18 C 1.47948 * 113.64939 * 95.39465 * 7 6 5 19 19 C 1.50536 * 109.56803 * 120.37724 * 2 1 3 20 20 H 1.08998 * 109.47638 * 180.24391 * 1 2 3 21 21 H 1.09001 * 109.47082 * 300.25036 * 1 2 3 22 22 H 1.09003 * 109.46819 * 60.24487 * 1 2 3 23 23 H 1.09000 * 109.04052 * 42.38923 * 4 2 1 24 24 H 1.08994 * 108.98417 * 283.46727 * 4 2 1 25 25 H 1.09005 * 108.84652 * 300.67750 * 5 4 2 26 26 H 1.09001 * 108.84444 * 182.32295 * 5 4 2 27 27 H 1.08999 * 109.69708 * 158.88859 * 6 5 4 28 28 H 1.08996 * 109.72476 * 38.32556 * 6 5 4 29 29 H 1.09002 * 109.47401 * 306.04784 * 8 7 6 30 30 H 1.09001 * 109.46874 * 186.04797 * 8 7 6 31 31 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 32 32 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 33 33 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 34 34 H 1.08997 * 108.71367 * 79.13503 * 18 7 6 35 35 H 1.09001 * 108.71213 * 197.14842 * 18 7 6 36 36 H 1.08997 * 108.78838 * 332.45256 * 19 2 1 37 37 H 1.09002 * 108.79211 * 90.78709 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0476 -0.7334 -1.2577 5 6 3.4492 -0.4269 -1.5214 6 6 4.3788 -0.8689 -0.3762 7 7 4.3378 0.1389 0.6558 8 6 5.6788 0.3895 1.2006 9 6 6.5608 1.0136 0.1173 10 6 7.9364 1.2713 0.6763 11 1 8.1593 1.0151 1.7015 12 6 8.9106 1.8331 -0.1214 13 7 8.6392 2.1447 -1.3700 14 14 10.6155 2.1532 0.5717 15 1 11.4720 0.9605 0.3497 16 1 11.2152 3.3273 -0.1115 17 1 10.5146 2.4260 2.0280 18 6 3.3732 -0.1584 1.7375 19 6 2.0342 -0.7173 1.2237 20 1 -0.3634 -1.0276 0.0044 21 1 -0.3633 0.5177 0.8877 22 1 -0.3633 0.5100 -0.8922 23 1 1.4496 -0.4306 -2.1173 24 1 1.9402 -1.8081 -1.1109 25 1 3.5536 0.6486 -1.6644 26 1 3.7540 -0.9330 -2.4375 27 1 5.3979 -0.9715 -0.7491 28 1 4.0378 -1.8222 0.0274 29 1 6.1190 -0.5518 1.5299 30 1 5.6053 1.0721 2.0472 31 1 6.6343 0.3310 -0.7293 32 1 6.1207 1.9548 -0.2120 33 1 9.3247 2.5396 -1.9313 34 1 3.8199 -0.8871 2.4139 35 1 3.1788 0.7583 2.2943 36 1 1.2897 -0.6278 2.0147 37 1 2.1651 -1.7724 0.9832 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070158186.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:34 Heat of formation + Delta-G solvation = -39.998870 kcal Electronic energy + Delta-G solvation = -14559.030930 eV Core-core repulsion = 12334.409434 eV Total energy + Delta-G solvation = -2224.621496 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.27560 -36.83453 -34.95917 -33.53341 -31.87287 -29.06958 -27.15240 -25.78208 -24.17191 -22.32691 -21.13228 -20.33003 -18.60753 -16.94897 -16.57722 -16.41471 -15.59613 -15.32702 -14.84158 -14.54717 -14.24877 -14.04277 -13.71972 -13.33029 -13.18551 -13.00784 -12.83455 -12.47694 -12.17730 -12.00781 -11.73005 -11.57010 -11.42020 -11.31473 -11.23685 -11.16706 -11.01498 -10.53275 -8.97523 -8.19813 -6.31430 1.39724 1.41550 1.52728 2.40241 3.10066 3.13341 3.78137 3.98472 4.05567 4.16178 4.25641 4.43349 4.48435 4.57222 4.65162 4.75726 4.79231 4.82215 4.96396 5.01628 5.04405 5.09736 5.17686 5.22346 5.29582 5.44864 5.47065 5.49448 5.53574 5.68516 5.72975 5.79958 6.16631 6.38889 6.54354 6.85928 7.37657 8.92376 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060226 B = 0.006348 C = 0.006015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.805910 B = 4409.887327 C = 4654.210577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.056 0.944 4 C -0.102 4.102 5 C -0.109 4.109 6 C 0.065 3.935 7 N -0.559 5.559 8 C 0.083 3.917 9 C 0.039 3.961 10 C -0.546 4.546 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.059 3.941 19 C -0.106 4.106 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.017 0.983 30 H 0.059 0.941 31 H -0.005 1.005 32 H -0.010 1.010 33 H 0.264 0.736 34 H 0.028 0.972 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.359 -6.637 3.446 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.075 0.925 4 C -0.139 4.139 5 C -0.147 4.147 6 C -0.064 4.064 7 N -0.284 5.284 8 C -0.044 4.044 9 C 0.001 3.999 10 C -0.585 4.585 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.068 4.068 19 C -0.143 4.143 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.013 0.987 32 H 0.008 0.992 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.463 -6.171 3.094 16.025 hybrid contribution 1.524 -0.281 0.351 1.589 sum -12.938 -6.452 3.445 14.863 Atomic orbital electron populations 1.21834 0.93713 1.02131 1.01899 1.20861 0.95929 0.99477 0.94257 0.92517 1.20577 0.94927 1.00289 0.98154 1.20423 0.96055 1.01081 0.97157 1.21761 0.99033 0.92701 0.92861 1.60737 1.07702 1.46254 1.13689 1.21940 0.87342 0.97673 0.97469 1.18931 0.92895 0.94382 0.93676 1.21638 0.97444 1.41155 0.98221 0.92294 1.25963 1.03409 0.95125 0.95094 1.70114 1.35449 1.43673 1.07926 0.85426 0.78790 0.77894 0.78789 1.19702 1.20651 1.18728 1.22463 0.92639 0.99582 0.92094 1.21425 0.94902 0.99516 0.98478 0.91929 0.92250 0.92613 0.91473 0.91691 0.93696 0.92221 0.93616 0.93393 0.96501 0.92268 0.98693 0.99190 0.92754 0.95413 0.91606 0.89674 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.91 71.98 0.64 -1.81 16 2 C -0.09 -2.04 2.42 -11.07 -0.03 -2.06 16 3 H 0.06 1.64 7.79 -2.39 -0.02 1.62 16 4 C -0.10 -2.47 4.74 28.93 0.14 -2.34 16 5 C -0.11 -3.41 5.37 28.74 0.15 -3.26 16 6 C 0.06 2.30 5.10 87.12 0.44 2.74 16 7 N -0.56 -21.04 4.01 -896.22 -3.59 -24.63 16 8 C 0.08 3.70 4.75 86.30 0.41 4.11 16 9 C 0.04 2.14 4.93 29.85 0.15 2.28 16 10 C -0.55 -32.03 9.11 25.60 0.23 -31.79 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 12 C 0.00 0.12 5.46 84.66 0.46 0.58 16 13 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 14 Si 0.97 44.98 29.54 68.60 2.03 47.00 16 15 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 18 C 0.06 1.75 5.38 86.41 0.46 2.21 16 19 C -0.11 -2.42 4.83 30.11 0.15 -2.28 16 20 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 22 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.07 1.47 8.02 -2.39 -0.02 1.45 16 24 H 0.06 1.41 7.58 -2.39 -0.02 1.39 16 25 H 0.04 1.64 8.08 -2.38 -0.02 1.62 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.90 5.87 -2.39 -0.01 1.89 16 28 H 0.05 1.50 6.79 -2.39 -0.02 1.48 16 29 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 30 H 0.06 2.58 8.04 -2.39 -0.02 2.56 16 31 H -0.01 -0.31 6.39 -2.39 -0.02 -0.32 16 32 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.03 0.80 8.02 -2.39 -0.02 0.78 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.59 7.70 -2.39 -0.02 1.57 16 37 H 0.06 1.34 6.65 -2.39 -0.02 1.32 16 Total: -1.00 -64.60 283.06 2.93 -61.67 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.00 Total: 5.29 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 3.21 Total: -31.62 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.30 Total: -82.34 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.60 2.93 -61.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070158186.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.670 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds