Wall clock time and date at job start Sun Mar 29 2020 21:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 108.74249 * 2 1 4 4 C 1.50464 * 108.77043 * 118.30928 * 2 1 3 5 5 C 1.54499 * 108.85238 * 213.06741 * 4 2 1 6 6 C 1.45863 * 111.59684 * 282.80344 * 5 4 2 7 7 N 1.47811 * 112.91246 * 61.32719 * 6 5 4 8 8 C 1.46899 * 110.99721 * 153.86962 * 7 6 5 9 9 C 1.52997 * 109.47254 * 66.04610 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46616 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47104 * 119.99966 * 14 12 10 17 17 H 1.48489 * 109.47200 * 240.00246 * 14 12 10 18 18 C 1.44266 * 109.46403 * 276.74230 * 7 6 5 19 19 C 1.54065 * 111.98182 * 96.43526 * 18 7 6 20 20 H 1.08997 * 109.46508 * 301.69361 * 1 2 3 21 21 H 1.09000 * 109.46397 * 61.69230 * 1 2 3 22 22 H 1.08998 * 109.47115 * 181.69234 * 1 2 3 23 23 H 1.09007 * 109.57402 * 93.25615 * 4 2 1 24 24 H 1.09005 * 109.57215 * 332.87833 * 4 2 1 25 25 H 1.09004 * 109.05779 * 162.26204 * 5 4 2 26 26 H 1.09006 * 109.00307 * 43.31916 * 5 4 2 27 27 H 1.08997 * 108.79258 * 300.44955 * 6 5 4 28 28 H 1.08999 * 108.79433 * 182.21184 * 6 5 4 29 29 H 1.09002 * 109.47043 * 186.04681 * 8 7 6 30 30 H 1.09001 * 109.47354 * 306.04742 * 8 7 6 31 31 H 1.09002 * 109.47153 * 300.00004 * 9 8 7 32 32 H 1.08998 * 109.47533 * 59.99633 * 9 8 7 33 33 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 34 34 H 1.08995 * 108.98122 * 217.08386 * 18 7 6 35 35 H 1.09001 * 108.98045 * 335.79597 * 18 7 6 36 36 H 1.09000 * 108.92033 * 198.19224 * 19 18 7 37 37 H 1.09005 * 108.84518 * 79.59433 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8803 1.0322 0.0000 4 6 2.0142 -0.6756 1.2542 5 6 3.3350 -0.0104 1.7016 6 6 4.4627 -0.4581 0.8920 7 7 4.3141 -0.1195 -0.5391 8 6 5.6252 -0.0010 -1.1908 9 6 6.3109 -1.3686 -1.2097 10 6 7.6557 -1.2472 -1.8788 11 1 7.9883 -0.2902 -2.2529 12 6 8.4619 -2.3576 -2.0127 13 7 8.0571 -3.5229 -1.5568 14 14 10.1286 -2.2073 -2.8428 15 1 10.3463 -0.8002 -3.2645 16 1 11.1943 -2.6084 -1.8896 17 1 10.1702 -3.0935 -4.0335 18 6 3.5026 -1.1202 -1.1882 19 6 2.0266 -0.6902 -1.2876 20 1 -0.3632 0.5399 0.8744 21 1 -0.3632 0.4873 -0.9048 22 1 -0.3633 -1.0272 0.0303 23 1 2.1869 -1.7334 1.0558 24 1 1.2662 -0.5668 2.0396 25 1 3.5243 -0.2616 2.7453 26 1 3.2370 1.0712 1.6083 27 1 4.5570 -1.5397 0.9889 28 1 5.3730 0.0069 1.2703 29 1 5.4921 0.3529 -2.2132 30 1 6.2428 0.7074 -0.6386 31 1 6.4440 -1.7224 -0.1873 32 1 5.6934 -2.0771 -1.7618 33 1 8.6244 -4.3041 -1.6506 34 1 3.8897 -1.2939 -2.1922 35 1 3.5638 -2.0489 -0.6208 36 1 1.4135 -1.5717 -1.4749 37 1 1.9166 0.0005 -2.1237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070158188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:36 Heat of formation + Delta-G solvation = -22.954033 kcal Electronic energy + Delta-G solvation = -14656.124344 eV Core-core repulsion = 12432.241968 eV Total energy + Delta-G solvation = -2223.882376 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.07638 -35.44454 -32.96140 -32.31274 -29.82360 -27.64253 -25.65841 -23.93525 -22.92127 -21.42934 -19.74899 -18.46180 -16.46823 -15.35140 -15.13686 -14.61142 -14.51525 -14.06455 -13.22641 -13.05050 -12.72580 -12.49198 -12.18929 -12.02838 -11.55879 -11.43200 -11.17338 -10.92430 -10.64362 -10.48826 -10.24210 -10.19072 -10.12778 -9.86330 -9.83251 -9.67230 -9.13236 -8.36438 -7.47295 -6.01935 -4.04866 3.29661 3.37221 3.41605 4.43342 4.60072 4.97132 5.08776 5.21473 5.33695 5.43728 5.60279 5.64561 5.73162 5.80231 5.91538 5.98782 6.04511 6.11497 6.22255 6.27310 6.38049 6.41265 6.50536 6.57423 6.60213 6.63721 6.74880 6.80729 6.94129 7.55202 7.62067 7.76523 7.94270 8.01752 8.42928 9.02803 9.59546 11.09126 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.061321 B = 0.006451 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.503042 B = 4339.508379 C = 4441.990920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.111 4.111 6 C 0.054 3.946 7 N -0.532 5.532 8 C 0.058 3.942 9 C -0.009 4.009 10 C -0.519 4.519 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.056 3.944 19 C -0.103 4.103 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.015 0.985 32 H 0.018 0.982 33 H 0.259 0.741 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.055 5.527 4.153 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.074 4.074 7 N -0.254 5.254 8 C -0.069 4.069 9 C -0.048 4.048 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.073 4.073 19 C -0.141 4.141 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.243 5.825 4.122 14.171 hybrid contribution 1.448 -0.935 -0.419 1.774 sum -10.795 4.890 3.703 12.416 Atomic orbital electron populations 1.21988 0.96497 1.01135 1.00987 1.20798 0.93836 1.00801 0.94562 0.90941 1.21414 0.96668 0.99971 0.96755 1.20607 0.95077 1.00922 0.98281 1.20915 0.97885 0.99208 0.89411 1.61905 1.15633 1.46087 1.01824 1.22443 0.87054 0.99700 0.97730 1.19720 0.95662 0.92086 0.97301 1.21225 1.01907 0.94816 1.37818 0.92553 1.25029 0.98331 0.95388 0.95671 1.69982 1.37344 0.99518 1.46680 0.86539 0.84109 0.78169 0.79234 1.19670 1.21030 1.21014 1.21833 0.92725 0.93142 0.99627 1.22024 0.95707 0.99400 0.96982 0.93228 0.93192 0.93193 0.92251 0.92576 0.92423 0.91797 0.94512 0.91860 0.92036 0.92173 0.96622 0.96395 0.93086 0.91570 0.94428 0.92846 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.79 37.16 0.33 -1.28 16 2 C -0.08 -1.06 2.32 -91.21 -0.21 -1.27 16 3 H 0.07 1.02 7.38 -51.93 -0.38 0.63 16 4 C -0.11 -1.44 5.10 -27.21 -0.14 -1.57 16 5 C -0.11 -1.55 5.53 -29.32 -0.16 -1.71 16 6 C 0.05 0.92 4.01 -6.70 -0.03 0.90 16 7 N -0.53 -9.79 4.45 -239.56 -1.07 -10.86 16 8 C 0.06 1.23 5.00 -3.83 -0.02 1.21 16 9 C -0.01 -0.25 4.42 -27.89 -0.12 -0.37 16 10 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 11 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 14 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.06 0.99 4.00 -4.68 -0.02 0.97 16 19 C -0.10 -1.47 5.51 -25.50 -0.14 -1.61 16 20 H 0.05 0.49 8.07 -51.93 -0.42 0.07 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.83 7.15 -51.93 -0.37 0.46 16 24 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.88 7.58 -51.93 -0.39 0.49 16 27 H 0.04 0.69 6.90 -51.93 -0.36 0.33 16 28 H 0.06 1.12 7.64 -51.93 -0.40 0.73 16 29 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 30 H 0.06 1.27 7.89 -51.93 -0.41 0.86 16 31 H 0.02 0.43 7.17 -51.93 -0.37 0.06 16 32 H 0.02 0.49 6.65 -51.93 -0.35 0.15 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.07 1.27 6.81 -51.93 -0.35 0.92 16 35 H 0.04 0.70 6.51 -51.93 -0.34 0.37 16 36 H 0.05 0.71 7.98 -51.93 -0.41 0.29 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 280.04 15.07 4.22 4.22 Total: -1.00 -29.36 280.04 -8.67 -38.03 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -6.61 Total: -3.48 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -0.93 Total: -18.27 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.33 Total: -37.27 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.36 -8.67 -38.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070158188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.077 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds