Wall clock time and date at job start Sun Mar 29 2020 21:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 108.74249 * 2 1 4 4 C 1.50464 * 108.77043 * 118.30928 * 2 1 3 5 5 C 1.54499 * 108.85238 * 213.06741 * 4 2 1 6 6 C 1.45863 * 111.59684 * 282.80344 * 5 4 2 7 7 N 1.47811 * 112.91246 * 61.32719 * 6 5 4 8 8 C 1.46899 * 110.99721 * 153.86962 * 7 6 5 9 9 C 1.52997 * 109.47254 * 66.04610 * 8 7 6 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46616 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47104 * 119.99966 * 14 12 10 17 17 H 1.48489 * 109.47200 * 240.00246 * 14 12 10 18 18 C 1.44266 * 109.46403 * 276.74230 * 7 6 5 19 19 C 1.54065 * 111.98182 * 96.43526 * 18 7 6 20 20 H 1.08997 * 109.46508 * 301.69361 * 1 2 3 21 21 H 1.09000 * 109.46397 * 61.69230 * 1 2 3 22 22 H 1.08998 * 109.47115 * 181.69234 * 1 2 3 23 23 H 1.09007 * 109.57402 * 93.25615 * 4 2 1 24 24 H 1.09005 * 109.57215 * 332.87833 * 4 2 1 25 25 H 1.09004 * 109.05779 * 162.26204 * 5 4 2 26 26 H 1.09006 * 109.00307 * 43.31916 * 5 4 2 27 27 H 1.08997 * 108.79258 * 300.44955 * 6 5 4 28 28 H 1.08999 * 108.79433 * 182.21184 * 6 5 4 29 29 H 1.09002 * 109.47043 * 186.04681 * 8 7 6 30 30 H 1.09001 * 109.47354 * 306.04742 * 8 7 6 31 31 H 1.09002 * 109.47153 * 300.00004 * 9 8 7 32 32 H 1.08998 * 109.47533 * 59.99633 * 9 8 7 33 33 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 34 34 H 1.08995 * 108.98122 * 217.08386 * 18 7 6 35 35 H 1.09001 * 108.98045 * 335.79597 * 18 7 6 36 36 H 1.09000 * 108.92033 * 198.19224 * 19 18 7 37 37 H 1.09005 * 108.84518 * 79.59433 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8803 1.0322 0.0000 4 6 2.0142 -0.6756 1.2542 5 6 3.3350 -0.0104 1.7016 6 6 4.4627 -0.4581 0.8920 7 7 4.3141 -0.1195 -0.5391 8 6 5.6252 -0.0010 -1.1908 9 6 6.3109 -1.3686 -1.2097 10 6 7.6557 -1.2472 -1.8788 11 1 7.9883 -0.2902 -2.2529 12 6 8.4619 -2.3576 -2.0127 13 7 8.0571 -3.5229 -1.5568 14 14 10.1286 -2.2073 -2.8428 15 1 10.3463 -0.8002 -3.2645 16 1 11.1943 -2.6084 -1.8896 17 1 10.1702 -3.0935 -4.0335 18 6 3.5026 -1.1202 -1.1882 19 6 2.0266 -0.6902 -1.2876 20 1 -0.3632 0.5399 0.8744 21 1 -0.3632 0.4873 -0.9048 22 1 -0.3633 -1.0272 0.0303 23 1 2.1869 -1.7334 1.0558 24 1 1.2662 -0.5668 2.0396 25 1 3.5243 -0.2616 2.7453 26 1 3.2370 1.0712 1.6083 27 1 4.5570 -1.5397 0.9889 28 1 5.3730 0.0069 1.2703 29 1 5.4921 0.3529 -2.2132 30 1 6.2428 0.7074 -0.6386 31 1 6.4440 -1.7224 -0.1873 32 1 5.6934 -2.0771 -1.7618 33 1 8.6244 -4.3041 -1.6506 34 1 3.8897 -1.2939 -2.1922 35 1 3.5638 -2.0489 -0.6208 36 1 1.4135 -1.5717 -1.4749 37 1 1.9166 0.0005 -2.1237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070158188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:36 Heat of formation + Delta-G solvation = -40.462802 kcal Electronic energy + Delta-G solvation = -14656.883581 eV Core-core repulsion = 12432.241968 eV Total energy + Delta-G solvation = -2224.641613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.46108 -36.86020 -34.95054 -33.65853 -31.59551 -29.09063 -27.06947 -25.69090 -24.30216 -23.06329 -21.05795 -19.84094 -18.64178 -16.73046 -16.63037 -16.52825 -15.78760 -15.48096 -14.79896 -14.44669 -14.35918 -13.83741 -13.54227 -13.41134 -13.17687 -12.93820 -12.72026 -12.67068 -12.34414 -11.91125 -11.74489 -11.65653 -11.55771 -11.33685 -11.17869 -11.13734 -11.07858 -10.58833 -9.12384 -8.23581 -6.36334 1.37642 1.37704 1.51618 2.37695 3.08796 3.11274 3.81699 3.96032 4.11895 4.26515 4.27411 4.36936 4.50665 4.57394 4.66021 4.80537 4.86938 4.87867 4.94999 4.99103 5.01491 5.09411 5.15392 5.22885 5.30209 5.42436 5.45249 5.49983 5.54006 5.55980 5.70766 5.73116 6.03427 6.31018 6.38096 6.81669 7.33518 8.87542 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.061321 B = 0.006451 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.503042 B = 4339.508379 C = 4441.990920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.108 4.108 6 C 0.057 3.943 7 N -0.521 5.521 8 C 0.071 3.929 9 C 0.002 3.998 10 C -0.542 4.542 11 H 0.062 0.938 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.967 3.033 15 H -0.260 1.260 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.058 3.942 19 C -0.097 4.097 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.045 0.955 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.012 0.988 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.064 0.936 31 H -0.012 1.012 32 H -0.008 1.008 33 H 0.263 0.737 34 H 0.044 0.956 35 H 0.019 0.981 36 H 0.065 0.935 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.717 6.734 4.257 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.071 4.071 7 N -0.244 5.244 8 C -0.057 4.057 9 C -0.036 4.036 10 C -0.581 4.581 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.791 3.209 15 H -0.184 1.184 16 H -0.204 1.204 17 H -0.204 1.204 18 C -0.072 4.072 19 C -0.135 4.135 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.006 0.994 32 H 0.010 0.990 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.924 7.044 4.230 15.315 hybrid contribution 1.649 -1.354 -0.435 2.178 sum -11.274 5.690 3.795 13.187 Atomic orbital electron populations 1.21922 0.94292 1.01780 1.02017 1.20780 0.95663 0.99924 0.93494 0.91609 1.21420 0.96647 0.98894 0.97613 1.20580 0.94174 1.01384 0.98439 1.20990 0.99407 0.97653 0.89030 1.62055 1.13756 1.46117 1.02428 1.22220 0.88263 0.96853 0.98370 1.19569 0.95154 0.94057 0.94850 1.21665 1.03023 0.95255 1.38113 0.91972 1.26001 1.02693 0.94877 0.96200 1.70118 1.39110 1.00433 1.47862 0.85369 0.78670 0.78741 0.78104 1.18391 1.20361 1.20359 1.21861 0.94996 0.92475 0.97837 1.21981 0.92894 1.00240 0.98363 0.91814 0.92608 0.92756 0.93664 0.90065 0.90656 0.90933 0.96992 0.92714 0.91819 0.91743 0.99374 0.99002 0.92801 0.93776 0.96261 0.91633 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 8.79 71.98 0.63 -2.00 16 2 C -0.08 -1.90 2.32 -11.17 -0.03 -1.93 16 3 H 0.07 1.68 7.38 -2.39 -0.02 1.67 16 4 C -0.11 -2.60 5.10 30.28 0.15 -2.45 16 5 C -0.11 -2.86 5.53 28.92 0.16 -2.70 16 6 C 0.06 1.98 4.01 83.94 0.34 2.32 16 7 N -0.52 -19.41 4.45 -911.82 -4.06 -23.47 16 8 C 0.07 3.08 5.00 86.30 0.43 3.51 16 9 C 0.00 0.11 4.42 29.85 0.13 0.24 16 10 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 11 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 12 C 0.00 0.00 5.46 84.65 0.46 0.46 16 13 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 14 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 15 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 C 0.06 2.09 4.00 87.16 0.35 2.44 16 19 C -0.10 -2.67 5.51 31.39 0.17 -2.50 16 20 H 0.06 1.01 8.07 -2.39 -0.02 1.00 16 21 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.04 1.22 7.15 -2.38 -0.02 1.20 16 24 H 0.08 1.58 7.68 -2.38 -0.02 1.56 16 25 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.07 1.83 7.58 -2.38 -0.02 1.81 16 27 H 0.01 0.47 6.90 -2.39 -0.02 0.45 16 28 H 0.05 1.97 7.64 -2.39 -0.02 1.96 16 29 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 30 H 0.06 2.74 7.89 -2.39 -0.02 2.72 16 31 H -0.01 -0.71 7.17 -2.39 -0.02 -0.73 16 32 H -0.01 -0.49 6.65 -2.39 -0.02 -0.50 16 33 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.04 1.77 6.81 -2.39 -0.02 1.75 16 35 H 0.02 0.76 6.51 -2.39 -0.02 0.74 16 36 H 0.07 1.65 7.98 -2.39 -0.02 1.64 16 37 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -63.61 280.04 2.29 -61.31 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.00 Total: 6.72 kcal Atomic # 6 Polarization: -36.79 SS G_CDS: 3.04 Total: -33.75 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.77 Total: -81.11 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -63.61 2.29 -61.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070158188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.851 kcal (2) G-P(sol) polarization free energy of solvation -63.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds