Wall clock time and date at job start Sun Mar 29 2020 21:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46894 * 111.00637 * 2 1 4 4 C 1.52998 * 109.47203 * 293.95299 * 3 2 1 5 5 C 1.50698 * 109.47536 * 179.97438 * 4 3 2 6 6 H 1.08005 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00390 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99943 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00477 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47014 * 89.99829 * 9 7 5 11 11 H 1.48497 * 109.47311 * 210.00245 * 9 7 5 12 12 H 1.48504 * 109.46713 * 330.00427 * 9 7 5 13 13 C 1.46905 * 110.99823 * 123.95301 * 2 1 3 14 14 C 1.52999 * 109.47433 * 164.04541 * 13 2 1 15 15 C 1.54269 * 110.02962 * 293.41990 * 14 13 2 16 16 C 1.54969 * 104.15814 * 217.13594 * 15 14 13 17 17 C 1.54891 * 102.77587 * 37.88924 * 16 15 14 18 18 C 1.53875 * 110.03421 * 176.20282 * 14 13 2 19 19 H 1.08998 * 109.47675 * 301.53070 * 1 2 3 20 20 H 1.09005 * 109.46752 * 61.52816 * 1 2 3 21 21 H 1.09000 * 109.47819 * 181.52679 * 1 2 3 22 22 H 1.09005 * 109.46724 * 53.94796 * 3 2 1 23 23 H 1.08992 * 109.47863 * 173.94782 * 3 2 1 24 24 H 1.09001 * 109.47072 * 299.99868 * 4 3 2 25 25 H 1.09002 * 109.47523 * 59.99344 * 4 3 2 26 26 H 0.96991 * 120.00057 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.47161 * 284.04690 * 13 2 1 28 28 H 1.09009 * 109.46931 * 44.04247 * 13 2 1 29 29 H 1.09001 * 110.01578 * 54.80709 * 14 13 2 30 30 H 1.09002 * 110.48739 * 335.78174 * 15 14 13 31 31 H 1.08999 * 110.48514 * 98.42796 * 15 14 13 32 32 H 1.08997 * 110.71926 * 279.57623 * 16 15 14 33 33 H 1.09001 * 110.92198 * 156.30129 * 16 15 14 34 34 H 1.08996 * 110.48101 * 203.40635 * 17 16 15 35 35 H 1.08997 * 110.59749 * 80.81755 * 17 16 15 36 36 H 1.08996 * 110.03226 * 238.56775 * 18 14 13 37 37 H 1.09000 * 110.02924 * 0.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 -1.3182 5 6 2.1713 3.4644 -1.3181 6 1 2.7194 3.8324 -0.4633 7 6 1.9662 4.2816 -2.4094 8 7 1.2992 3.8333 -3.4505 9 14 2.6357 6.0255 -2.4095 10 1 4.0079 6.0289 -2.9775 11 1 1.7566 6.8932 -3.2338 12 1 2.6750 6.5406 -1.0173 13 6 1.9953 -0.7660 1.1377 14 6 3.4729 -1.0833 0.8990 15 6 3.6197 -2.0504 -0.2940 16 6 4.7851 -2.9854 0.1172 17 6 4.5464 -3.1833 1.6348 18 6 4.0622 -1.8030 2.1247 19 1 -0.3634 0.5374 0.8759 20 1 -0.3633 0.4899 -0.9034 21 1 -0.3635 -1.0273 0.0274 22 1 1.5611 1.9273 0.8309 23 1 3.0797 1.3443 0.1083 24 1 2.0659 1.5014 -2.1491 25 1 0.5473 2.0845 -1.4266 26 1 1.1546 4.4083 -4.2181 27 1 1.8927 -0.1784 2.0499 28 1 1.4358 -1.6960 1.2396 29 1 4.0252 -0.1639 0.7044 30 1 2.7032 -2.6231 -0.4358 31 1 3.8719 -1.5015 -1.2012 32 1 5.7468 -2.5051 -0.0631 33 1 4.7253 -3.9372 -0.4107 34 1 5.4747 -3.4611 2.1338 35 1 3.7805 -3.9395 1.8070 36 1 4.9011 -1.2334 2.5246 37 1 3.2954 -1.9266 2.8895 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070158347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:08 Heat of formation + Delta-G solvation = -26.250556 kcal Electronic energy + Delta-G solvation = -14300.807103 eV Core-core repulsion = 12076.781779 eV Total energy + Delta-G solvation = -2224.025324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.58828 -36.28428 -32.99567 -30.37031 -29.15449 -28.47196 -25.72685 -24.70364 -22.10101 -20.59231 -19.97869 -19.03077 -16.44012 -15.75188 -15.03603 -14.66800 -14.48196 -13.93030 -13.74791 -13.18155 -13.01399 -12.24880 -12.14732 -11.58922 -11.33711 -11.07815 -11.02462 -10.88554 -10.80674 -10.70077 -10.57690 -10.45940 -10.37806 -10.17169 -9.65875 -9.29618 -9.07033 -8.29655 -7.62494 -5.96453 -3.98593 3.33892 3.39873 3.43135 4.41743 4.56208 4.81855 4.85567 4.97967 5.36702 5.39363 5.58968 5.65701 5.73204 5.78730 5.80023 5.89077 5.96044 5.98047 6.02591 6.06560 6.23403 6.27567 6.35820 6.42112 6.52524 6.56807 6.62469 6.72422 7.06278 7.58186 7.65309 7.85318 7.95932 8.13283 8.48077 9.08919 9.64818 11.15013 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.006334 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.122270 B = 4419.282262 C = 4666.337988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.541 5.541 3 C 0.062 3.938 4 C 0.028 3.972 5 C -0.521 4.521 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.063 3.937 14 C -0.089 4.089 15 C -0.102 4.102 16 C -0.129 4.129 17 C -0.123 4.123 18 C -0.120 4.120 19 H 0.016 0.984 20 H 0.077 0.923 21 H 0.053 0.947 22 H 0.017 0.983 23 H 0.061 0.939 24 H 0.024 0.976 25 H 0.016 0.984 26 H 0.260 0.740 27 H 0.024 0.976 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -12.043 9.013 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.265 5.265 3 C -0.065 4.065 4 C -0.009 4.009 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 C -0.065 4.065 14 C -0.108 4.108 15 C -0.140 4.140 16 C -0.167 4.167 17 C -0.160 4.160 18 C -0.159 4.159 19 H 0.034 0.966 20 H 0.095 0.905 21 H 0.072 0.928 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.547 -12.210 8.414 15.247 hybrid contribution 0.027 1.466 0.701 1.625 sum 3.574 -10.745 9.115 14.537 Atomic orbital electron populations 1.22343 0.88211 1.00236 1.01209 1.62067 1.07188 1.15958 1.41315 1.22373 0.98674 0.85290 1.00151 1.19086 0.96849 0.93955 0.91052 1.21210 1.35023 0.97895 1.01855 0.92895 1.24987 0.95316 0.98406 0.95584 1.69974 1.40885 1.36422 1.06027 0.86612 0.78867 0.84682 0.77935 1.20647 1.21235 1.19963 1.22204 0.95088 0.97345 0.91908 1.21783 0.95526 0.99012 0.94504 1.22239 0.97472 0.96310 0.97978 1.22569 0.99220 0.99463 0.95433 1.22332 1.00305 0.97120 0.96268 1.22191 1.00013 0.95917 0.97739 0.96586 0.90477 0.92799 0.96513 0.92060 0.95781 0.96551 0.93041 0.95761 0.91839 0.90694 0.91726 0.91285 0.91856 0.92106 0.92325 0.92021 0.92121 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.27 60.06 0.56 1.05 16 2 N -0.54 -10.13 4.51 -242.92 -1.10 -11.22 16 3 C 0.06 1.35 4.75 -3.83 -0.02 1.33 16 4 C 0.03 0.74 4.90 -27.89 -0.14 0.61 16 5 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 6 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 13 C 0.06 0.97 4.03 -3.82 -0.02 0.95 16 14 C -0.09 -1.28 2.95 -89.50 -0.26 -1.55 16 15 C -0.10 -1.43 6.17 -25.03 -0.15 -1.58 16 16 C -0.13 -1.49 6.91 -24.69 -0.17 -1.66 16 17 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 18 C -0.12 -1.41 6.46 -25.61 -0.17 -1.58 16 19 H 0.02 0.27 8.13 -51.93 -0.42 -0.16 16 20 H 0.08 1.48 6.54 -51.93 -0.34 1.14 16 21 H 0.05 0.80 7.97 -51.93 -0.41 0.38 16 22 H 0.02 0.37 8.11 -51.93 -0.42 -0.05 16 23 H 0.06 1.32 6.35 -51.93 -0.33 0.99 16 24 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.46 6.59 -51.93 -0.34 0.11 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 28 H 0.06 0.89 7.77 -51.92 -0.40 0.49 16 29 H 0.07 1.21 6.48 -51.93 -0.34 0.87 16 30 H 0.06 0.91 7.78 -51.93 -0.40 0.50 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -29.83 289.97 -8.69 -38.52 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -6.73 Total: -4.43 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.95 Total: -17.63 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.36 Total: -37.73 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.83 -8.69 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070158347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.273 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds