Wall clock time and date at job start Sun Mar 29 2020 21:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91459 * 179.97438 * 5 4 3 7 7 H 1.08992 * 109.47228 * 165.02356 * 6 5 4 8 8 C 1.53003 * 109.47039 * 285.02420 * 6 5 4 9 9 N 1.46503 * 109.47334 * 45.02013 * 6 5 4 10 10 C 1.36933 * 120.00046 * 155.00263 * 9 6 5 11 11 H 1.08003 * 120.00118 * 0.02562 * 10 9 6 12 12 C 1.38813 * 119.99980 * 180.02562 * 10 9 6 13 13 N 1.31621 * 120.00003 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00065 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46887 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.46985 * 119.99530 * 14 12 10 17 17 H 1.48494 * 109.47295 * 239.99862 * 14 12 10 18 18 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 19 19 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 20 20 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 21 21 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 22 22 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 23 23 H 1.09002 * 109.46988 * 59.99821 * 8 6 5 24 24 H 1.09000 * 109.47337 * 180.02562 * 8 6 5 25 25 H 1.09003 * 109.46734 * 299.99888 * 8 6 5 26 26 H 0.97000 * 119.99684 * 335.00131 * 9 6 5 27 27 H 0.96999 * 119.99881 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1269 -0.0001 7 1 3.9654 -3.0484 0.2652 8 6 5.0993 -2.2710 -1.3933 9 7 5.5429 -1.8637 0.9771 10 6 6.2348 -2.9058 1.5342 11 1 5.9999 -3.9218 1.2529 12 6 7.2382 -2.6564 2.4605 13 7 7.5248 -1.4183 2.8029 14 14 8.1816 -4.0780 3.2210 15 1 7.6708 -5.3604 2.6733 16 1 9.6252 -3.9422 2.9000 17 1 7.9985 -4.0618 4.6945 18 7 2.2200 -1.1083 -0.0010 19 1 -0.3633 -0.0004 -1.0276 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5134 22 1 1.8390 2.1309 0.0037 23 1 5.6175 -1.3494 -1.6585 24 1 5.8075 -3.0996 -1.3937 25 1 4.3111 -2.4668 -2.1203 26 1 5.7541 -0.9512 1.2294 27 1 8.2262 -1.2440 3.4498 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070634664.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:00 Heat of formation + Delta-G solvation = 47.673141 kcal Electronic energy + Delta-G solvation = -11751.818216 eV Core-core repulsion = 9636.659235 eV Total energy + Delta-G solvation = -2115.158981 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.46073 -35.69940 -32.46732 -30.89911 -28.49240 -27.33993 -24.94690 -23.38544 -20.54216 -19.37550 -17.48038 -16.94688 -15.17455 -14.68171 -14.50876 -13.69045 -13.52854 -12.94955 -12.75685 -12.47590 -12.30590 -12.01345 -11.43479 -10.94075 -10.90569 -10.84893 -10.70249 -10.11119 -9.79997 -9.17861 -9.08696 -8.92587 -8.29166 -7.11601 -5.83991 -3.15211 1.13385 1.82385 2.24764 3.15261 3.41239 3.46895 3.49156 4.36832 4.61423 5.29052 5.38239 5.48462 5.52252 5.65490 5.69087 5.83981 6.04328 6.10144 6.18093 6.47082 6.53124 6.69321 6.89408 7.64944 8.17276 8.32376 9.43945 9.93751 10.29965 11.38240 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.050141 B = 0.007887 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.288540 B = 3549.472592 C = 3635.017654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.064 3.936 3 C -0.291 4.291 4 S 0.136 5.864 5 C 0.078 3.922 6 C 0.240 3.760 7 H 0.079 0.921 8 C -0.159 4.159 9 N -0.719 5.719 10 C -0.244 4.244 11 H 0.077 0.923 12 C -0.009 4.009 13 N -0.929 5.929 14 Si 0.911 3.089 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.291 1.291 18 N -0.485 5.485 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.070 0.930 22 H 0.169 0.831 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.385 0.615 27 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.672 4.335 -6.792 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.431 4.431 4 S 0.392 5.608 5 C -0.201 4.201 6 C 0.127 3.873 7 H 0.097 0.903 8 C -0.221 4.221 9 N -0.362 5.362 10 C -0.375 4.375 11 H 0.095 0.905 12 C -0.205 4.205 13 N -0.577 5.577 14 Si 0.742 3.258 15 H -0.204 1.204 16 H -0.217 1.217 17 H -0.218 1.218 18 N -0.201 5.201 19 H 0.089 0.911 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.187 0.813 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.220 0.780 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.847 4.195 -6.711 11.870 hybrid contribution -0.280 -0.267 0.620 0.731 sum -9.127 3.928 -6.091 11.654 Atomic orbital electron populations 1.20292 0.87743 1.02939 1.02406 1.20270 0.97947 0.86905 1.01756 1.26762 0.96295 1.03491 1.16541 1.84155 1.05960 1.03688 1.66967 1.27952 0.94047 0.98739 0.99398 1.18884 0.86196 0.91108 0.91125 0.90347 1.22447 1.00397 1.02436 0.96780 1.42525 1.38102 1.07386 1.48207 1.19281 1.11954 0.87913 1.18313 0.90545 1.24783 0.99574 0.96524 0.99668 1.69682 1.33966 1.17629 1.36386 0.86063 0.79572 0.81323 0.78883 1.20350 1.21727 1.21770 1.66153 1.04659 1.31306 1.17944 0.91080 0.90815 0.91159 0.81331 0.93089 0.91279 0.93743 0.78018 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.31 36.00 0.37 -0.51 15 2 C 0.06 1.04 6.74 -84.22 -0.57 0.47 15 3 C -0.29 -4.41 11.13 29.12 0.32 -4.08 15 4 S 0.14 2.38 22.28 -107.50 -2.39 -0.01 15 5 C 0.08 1.54 6.30 -13.46 -0.08 1.45 15 6 C 0.24 5.10 3.40 -69.08 -0.23 4.86 15 7 H 0.08 1.71 8.08 -51.93 -0.42 1.29 15 8 C -0.16 -2.95 9.47 37.16 0.35 -2.59 15 9 N -0.72 -18.24 5.10 -54.55 -0.28 -18.52 15 10 C -0.24 -6.71 9.93 -15.06 -0.15 -6.86 15 11 H 0.08 2.02 7.83 -52.48 -0.41 1.61 15 12 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 15 13 N -0.93 -27.78 13.06 55.49 0.72 -27.06 15 14 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 15 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 15 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 18 N -0.49 -9.32 10.53 -8.06 -0.08 -9.41 15 19 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.07 0.67 8.12 -51.93 -0.42 0.25 15 22 H 0.17 1.98 8.06 -52.48 -0.42 1.55 15 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.38 10.24 6.99 -40.82 -0.29 9.96 15 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 252.72 15.07 3.81 3.81 Total: -1.00 -30.49 252.72 -6.54 -37.04 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -3.21 Total: 4.64 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.09 Total: -7.60 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.36 Total: -54.98 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.39 Total: -0.01 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.49 -6.54 -37.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634664.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.711 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds