Wall clock time and date at job start Sun Mar 29 2020 21:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33639 * 122.75101 * 2 1 4 4 S 1.76199 * 107.92139 * 179.75957 * 3 2 1 5 5 C 1.70968 * 90.28581 * 0.28362 * 4 3 2 6 6 C 1.50704 * 124.91919 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46952 * 194.69829 * 6 5 4 8 8 C 1.52996 * 109.47411 * 74.69268 * 6 5 4 9 9 N 1.46505 * 109.46730 * 314.69322 * 6 5 4 10 10 C 1.36931 * 119.99788 * 205.00050 * 9 6 5 11 11 H 1.08002 * 120.00438 * 0.02562 * 10 9 6 12 12 C 1.38817 * 119.99680 * 179.72358 * 10 9 6 13 13 N 1.31614 * 119.99888 * 0.27479 * 12 10 9 14 14 Si 1.86803 * 119.99862 * 180.27671 * 12 10 9 15 15 H 1.48498 * 109.47174 * 90.00121 * 14 12 10 16 16 H 1.48501 * 109.47062 * 210.00072 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99871 * 14 12 10 18 18 N 1.29029 * 110.16791 * 359.71039 * 5 4 3 19 19 H 1.09000 * 109.47270 * 270.02960 * 1 2 3 20 20 H 1.09004 * 109.46891 * 30.02167 * 1 2 3 21 21 H 1.08999 * 109.47230 * 150.02278 * 1 2 3 22 22 H 1.07995 * 126.03876 * 359.97438 * 3 2 1 23 23 H 1.08998 * 109.47099 * 180.02562 * 8 6 5 24 24 H 1.09002 * 109.46807 * 300.00364 * 8 6 5 25 25 H 1.08998 * 109.47019 * 59.99862 * 8 6 5 26 26 H 0.97000 * 119.99792 * 24.99844 * 9 6 5 27 27 H 0.97005 * 119.99715 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6730 0.0070 5 6 3.5040 -0.9819 0.0008 6 6 4.4835 -2.1272 0.0021 7 1 3.9653 -3.0487 -0.2634 8 6 5.0983 -2.2710 1.3957 9 7 5.5434 -1.8643 -0.9746 10 6 6.2355 -2.9066 -1.5310 11 1 5.9998 -3.9225 -1.2503 12 6 7.2359 -2.6577 -2.4607 13 7 7.5228 -1.4197 -2.8032 14 14 8.1749 -4.0800 -3.2256 15 1 7.4807 -4.5240 -4.4610 16 1 9.5523 -3.6393 -3.5629 17 1 8.2380 -5.2072 -2.2608 18 7 2.2199 -1.1084 0.0005 19 1 -0.3634 0.0005 1.0276 20 1 -0.3633 0.8898 -0.5142 21 1 -0.3633 -0.8902 -0.5135 22 1 1.8393 2.1307 -0.0004 23 1 5.8070 -3.0991 1.3964 24 1 5.6164 -1.3494 1.6610 25 1 4.3097 -2.4666 2.1223 26 1 5.7548 -0.9519 -1.2270 27 1 8.2221 -1.2459 -3.4526 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070634665.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:01 Heat of formation + Delta-G solvation = 27.293754 kcal Electronic energy + Delta-G solvation = -11752.628724 eV Core-core repulsion = 9636.586026 eV Total energy + Delta-G solvation = -2116.042698 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.80829 -37.45873 -34.31074 -32.34477 -30.28131 -28.47365 -26.59894 -25.18579 -22.13766 -20.77324 -19.27495 -18.48594 -16.83353 -16.38552 -15.86535 -15.44827 -15.07164 -14.49451 -14.11757 -13.92919 -13.43998 -13.33090 -13.01297 -12.79171 -12.65450 -12.37154 -12.19201 -12.03634 -11.78380 -11.07332 -10.59723 -10.32239 -9.60705 -9.15712 -7.97435 -5.29576 -0.21753 0.47693 0.91682 1.49040 1.50832 1.59290 1.83082 2.53456 3.09839 3.37730 3.89665 4.05637 4.31038 4.36939 4.47253 4.54164 4.81267 4.88047 4.92185 4.94772 5.09631 5.35199 5.42248 5.49722 6.21673 6.82691 7.29389 7.93927 8.21950 9.25743 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.050063 B = 0.007886 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.163346 B = 3549.663215 C = 3633.595570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.042 3.958 3 C -0.268 4.268 4 S 0.130 5.870 5 C 0.045 3.955 6 C 0.238 3.762 7 H 0.066 0.934 8 C -0.147 4.147 9 N -0.732 5.732 10 C -0.248 4.248 11 H 0.082 0.918 12 C -0.068 4.068 13 N -0.967 5.967 14 Si 0.977 3.023 15 H -0.289 1.289 16 H -0.294 1.294 17 H -0.266 1.266 18 N -0.500 5.500 19 H 0.089 0.911 20 H 0.097 0.903 21 H 0.067 0.933 22 H 0.209 0.791 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.376 0.624 27 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.935 4.701 7.405 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.407 4.407 4 S 0.384 5.616 5 C -0.233 4.233 6 C 0.126 3.874 7 H 0.084 0.916 8 C -0.208 4.208 9 N -0.374 5.374 10 C -0.379 4.379 11 H 0.100 0.900 12 C -0.261 4.261 13 N -0.617 5.617 14 Si 0.805 3.195 15 H -0.216 1.216 16 H -0.220 1.220 17 H -0.191 1.191 18 N -0.216 5.216 19 H 0.107 0.893 20 H 0.116 0.884 21 H 0.086 0.914 22 H 0.226 0.774 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.209 0.791 27 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.141 4.540 7.372 13.334 hybrid contribution -0.038 -0.312 -0.759 0.821 sum -10.179 4.228 6.613 12.854 Atomic orbital electron populations 1.20428 0.84600 1.04049 1.03912 1.20951 0.99921 0.86293 1.01826 1.27223 0.94302 1.05098 1.14054 1.84136 1.08287 1.02382 1.66748 1.27528 0.94217 0.99387 1.02194 1.18916 0.85663 0.91458 0.91332 0.91645 1.22267 1.00739 1.02173 0.95595 1.42641 1.39195 1.06450 1.49140 1.19618 1.11858 0.88717 1.17682 0.90023 1.25588 1.00985 0.98873 1.00667 1.69822 1.34998 1.19631 1.37231 0.85098 0.77281 0.78697 0.78392 1.21581 1.22041 1.19090 1.66166 1.04617 1.33242 1.17600 0.89294 0.88422 0.91370 0.77405 0.91918 0.93071 0.91402 0.79100 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 10.31 71.24 0.73 -0.71 15 2 C 0.04 1.26 6.74 41.52 0.28 1.54 15 3 C -0.27 -7.32 11.13 66.78 0.74 -6.57 15 4 S 0.13 4.41 22.29 -56.49 -1.26 3.15 15 5 C 0.04 1.77 6.30 88.52 0.56 2.32 15 6 C 0.24 10.18 3.40 44.24 0.15 10.33 15 7 H 0.07 2.91 8.08 -2.39 -0.02 2.89 15 8 C -0.15 -5.37 9.47 71.98 0.68 -4.69 15 9 N -0.73 -37.71 5.10 -326.49 -1.67 -39.38 15 10 C -0.25 -13.75 9.93 84.04 0.83 -12.91 15 11 H 0.08 4.32 7.83 -2.91 -0.02 4.30 15 12 C -0.07 -3.90 5.50 84.86 0.47 -3.44 15 13 N -0.97 -58.86 13.06 21.65 0.28 -58.58 15 14 Si 0.98 45.82 29.55 68.60 2.03 47.85 15 15 H -0.29 -13.42 7.11 99.48 0.71 -12.72 15 16 H -0.29 -13.83 7.11 99.48 0.71 -13.12 15 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 18 N -0.50 -18.71 10.53 -179.40 -1.89 -20.60 15 19 H 0.09 1.51 8.14 -2.39 -0.02 1.49 15 20 H 0.10 1.46 8.12 -2.38 -0.02 1.44 15 21 H 0.07 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.21 3.90 8.06 -2.91 -0.02 3.88 15 23 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.38 20.46 7.00 -92.71 -0.65 19.81 15 27 H 0.25 14.90 8.31 -92.70 -0.77 14.13 15 Total: -1.00 -65.38 252.73 2.46 -62.91 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.52 Total: 18.78 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.45 Total: -14.13 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -3.27 Total: -118.56 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.26 Total: 3.15 kcal Total: -65.38 2.46 -62.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070634665.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.206 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds