Wall clock time and date at job start Sun Mar 29 2020 21:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 H 1.08999 * 109.46995 * 305.62428 * 3 2 1 5 5 C 1.50708 * 109.46907 * 185.63139 * 3 2 1 6 6 H 1.07992 * 120.00055 * 239.99392 * 5 3 2 7 7 C 1.37876 * 119.99608 * 60.27635 * 5 3 2 8 8 N 1.31509 * 120.00704 * 359.71768 * 7 5 3 9 9 Si 1.86798 * 119.99597 * 179.72378 * 7 5 3 10 10 H 1.48498 * 109.47352 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47333 * 119.99587 * 9 7 5 12 12 H 1.48497 * 109.47508 * 239.99655 * 9 7 5 13 13 N 1.46898 * 109.47344 * 65.62932 * 3 2 1 14 14 C 1.46899 * 110.99820 * 207.17996 * 13 3 2 15 15 H 1.08994 * 110.67194 * 30.51685 * 14 13 3 16 16 C 1.54890 * 110.75463 * 267.28261 * 14 13 3 17 17 C 1.54475 * 104.09988 * 203.89607 * 16 14 13 18 18 C 1.53870 * 106.68176 * 23.34040 * 17 16 14 19 19 H 1.09005 * 110.03626 * 240.87473 * 18 17 16 20 20 C 1.53003 * 110.06920 * 119.46880 * 18 17 16 21 21 C 1.54263 * 106.60414 * 0.16123 * 18 17 16 22 22 H 1.09000 * 109.46742 * 174.23199 * 1 2 3 23 23 H 1.09002 * 109.47175 * 294.23026 * 1 2 3 24 24 H 1.08994 * 109.47248 * 54.22932 * 1 2 3 25 25 H 1.08998 * 109.47442 * 239.99681 * 2 1 3 26 26 H 1.08999 * 109.47419 * 119.99521 * 2 1 3 27 27 H 0.97001 * 120.00573 * 180.02562 * 8 7 5 28 28 H 1.00895 * 111.00060 * 331.14036 * 13 3 2 29 29 H 1.08996 * 110.48825 * 322.42005 * 16 14 13 30 30 H 1.09004 * 110.48605 * 85.06977 * 16 14 13 31 31 H 1.08997 * 109.85413 * 264.10810 * 17 16 14 32 32 H 1.08990 * 110.16297 * 142.75132 * 17 16 14 33 33 H 1.09001 * 109.47438 * 302.80344 * 20 18 17 34 34 H 1.08997 * 109.47495 * 62.80467 * 20 18 17 35 35 H 1.09002 * 109.47448 * 182.81029 * 20 18 17 36 36 H 1.08999 * 110.49190 * 217.71072 * 21 18 17 37 37 H 1.09000 * 110.48494 * 95.06329 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 3.5405 1.4448 -0.1394 6 1 4.1538 1.8866 0.6319 7 6 4.1300 0.8881 -1.2545 8 7 3.3833 0.3501 -2.1939 9 14 5.9896 0.8978 -1.4310 10 1 6.5958 1.5579 -0.2470 11 1 6.4851 -0.4988 -1.5273 12 1 6.3665 1.6424 -2.6593 13 7 1.6643 2.0947 1.2615 14 6 1.5333 3.5471 1.0846 15 1 1.2089 3.7836 0.0713 16 6 2.8666 4.2628 1.4153 17 6 2.4400 5.7001 1.7875 18 6 0.9705 5.6222 2.2370 19 1 0.3475 6.2345 1.5850 20 6 0.8385 6.0979 3.6852 21 6 0.5538 4.1410 2.1273 22 1 -0.3633 -1.0225 -0.1033 23 1 -0.3634 0.4218 0.9371 24 1 -0.3633 0.6007 -0.8338 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.7981 -0.0420 -2.9782 28 1 0.8152 1.6978 1.6350 29 1 3.3585 3.7816 2.2605 30 1 3.5221 4.2696 0.5444 31 1 2.5302 6.3501 0.9172 32 1 3.0598 6.0772 2.6008 33 1 1.4833 5.4959 4.3256 34 1 1.1349 7.1446 3.7523 35 1 -0.1967 5.9918 4.0096 36 1 -0.4743 4.0589 1.7748 37 1 0.6698 3.6399 3.0883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070644038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:28 Heat of formation + Delta-G solvation = -28.970569 kcal Electronic energy + Delta-G solvation = -14708.102959 eV Core-core repulsion = 12483.959686 eV Total energy + Delta-G solvation = -2224.143273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.28491 -35.56380 -32.26923 -31.20272 -29.35444 -27.74325 -25.86132 -24.10037 -22.55125 -19.83214 -19.54138 -18.91964 -16.24875 -15.56973 -14.82683 -14.59513 -13.83989 -13.37202 -13.28362 -12.71218 -12.61203 -12.52896 -11.91333 -11.86724 -11.26383 -10.97283 -10.80778 -10.60876 -10.59438 -10.46809 -10.33960 -10.21160 -9.93970 -9.80881 -9.58803 -9.36517 -8.95810 -8.28662 -7.15096 -5.90952 -3.93809 3.34233 3.42217 3.47531 4.49458 4.97720 5.00640 5.07885 5.37127 5.51469 5.69588 5.72774 5.83971 5.90654 5.99775 6.10149 6.18609 6.20611 6.22753 6.28885 6.39393 6.44693 6.48467 6.55527 6.75337 6.87777 6.97938 7.03052 7.13638 7.25811 7.58654 7.83785 8.00190 8.42420 8.47910 8.85117 9.15013 9.70731 11.14708 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029640 B = 0.009534 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.436751 B = 2936.018320 C = 3699.691297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.002 0.998 5 C -0.485 4.485 6 H 0.063 0.937 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.680 5.680 14 C 0.094 3.906 15 H 0.041 0.959 16 C -0.103 4.103 17 C -0.123 4.123 18 C -0.094 4.094 19 H 0.063 0.937 20 C -0.141 4.141 21 C -0.125 4.125 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.040 0.960 27 H 0.257 0.743 28 H 0.317 0.683 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 7.241 7.012 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.524 4.524 6 H 0.082 0.918 7 C -0.148 4.148 8 N -0.539 5.539 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.311 5.311 14 C -0.017 4.017 15 H 0.059 0.941 16 C -0.141 4.141 17 C -0.161 4.161 18 C -0.113 4.113 19 H 0.082 0.918 20 C -0.199 4.199 21 C -0.163 4.163 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.376 7.181 7.064 10.983 hybrid contribution 0.135 -0.004 -0.769 0.781 sum -4.241 7.177 6.295 10.446 Atomic orbital electron populations 1.21876 0.99678 0.99626 0.99503 1.21790 0.91179 1.00609 1.02993 1.19250 0.95551 0.89853 0.84328 0.98082 1.21288 0.91329 1.35839 1.03895 0.91844 1.24967 0.97913 0.95896 0.95995 1.69882 1.34477 1.40032 1.09542 0.86538 0.86109 0.77535 0.77813 1.19779 1.21225 1.21344 1.60743 1.36991 1.01429 1.31986 1.22370 0.94059 0.89406 0.95819 0.94067 1.22327 0.97702 0.92445 1.01664 1.22296 0.95175 0.98523 1.00092 1.21652 0.96980 0.96457 0.96260 0.91803 1.21867 1.01129 1.00454 0.96401 1.22675 0.98345 0.95035 1.00259 0.94456 0.94644 0.93953 0.88325 0.94114 0.93270 0.86550 0.91365 0.91426 0.92631 0.92358 0.92569 0.93240 0.93223 0.92795 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.65 37.16 0.36 -2.57 16 2 C -0.13 -3.03 5.35 -26.73 -0.14 -3.17 16 3 C 0.22 5.45 2.02 -68.86 -0.14 5.31 16 4 H 0.00 0.04 7.38 -51.93 -0.38 -0.34 16 5 C -0.48 -13.38 8.34 -34.44 -0.29 -13.67 16 6 H 0.06 1.78 7.48 -52.49 -0.39 1.39 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.85 11.30 55.43 0.63 -25.22 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.68 -14.55 6.21 -98.87 -0.61 -15.17 16 14 C 0.09 1.80 3.21 -65.72 -0.21 1.59 16 15 H 0.04 0.86 7.40 -51.93 -0.38 0.48 16 16 C -0.10 -1.91 5.76 -24.96 -0.14 -2.05 16 17 C -0.12 -1.81 6.46 -25.50 -0.16 -1.98 16 18 C -0.09 -1.28 3.50 -89.50 -0.31 -1.60 16 19 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 20 C -0.14 -1.62 8.84 37.16 0.33 -1.29 16 21 C -0.13 -1.91 5.73 -25.07 -0.14 -2.05 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.03 0.62 6.66 -51.93 -0.35 0.27 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 26 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.32 6.23 6.26 -39.29 -0.25 5.98 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.07 7.85 -51.93 -0.41 0.67 16 LS Contribution 287.06 15.07 4.33 4.33 Total: -1.00 -27.98 287.06 -8.29 -36.27 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.65 Total: 3.24 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.95 Total: -20.13 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.01 Total: -40.39 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.98 -8.29 -36.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070644038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.296 kcal (2) G-P(sol) polarization free energy of solvation -27.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds