Wall clock time and date at job start Sun Mar 29 2020 21:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46892 * 2 1 4 4 H 1.08999 * 109.46995 * 305.62428 * 3 2 1 5 5 C 1.50708 * 109.46907 * 185.63139 * 3 2 1 6 6 H 1.07992 * 120.00055 * 239.99392 * 5 3 2 7 7 C 1.37876 * 119.99608 * 60.27635 * 5 3 2 8 8 N 1.31509 * 120.00704 * 359.71768 * 7 5 3 9 9 Si 1.86798 * 119.99597 * 179.72378 * 7 5 3 10 10 H 1.48498 * 109.47352 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47333 * 119.99587 * 9 7 5 12 12 H 1.48497 * 109.47508 * 239.99655 * 9 7 5 13 13 N 1.46898 * 109.47344 * 65.62932 * 3 2 1 14 14 C 1.46899 * 110.99820 * 207.17996 * 13 3 2 15 15 H 1.08994 * 110.67194 * 30.51685 * 14 13 3 16 16 C 1.54890 * 110.75463 * 267.28261 * 14 13 3 17 17 C 1.54475 * 104.09988 * 203.89607 * 16 14 13 18 18 C 1.53870 * 106.68176 * 23.34040 * 17 16 14 19 19 H 1.09005 * 110.03626 * 240.87473 * 18 17 16 20 20 C 1.53003 * 110.06920 * 119.46880 * 18 17 16 21 21 C 1.54263 * 106.60414 * 0.16123 * 18 17 16 22 22 H 1.09000 * 109.46742 * 174.23199 * 1 2 3 23 23 H 1.09002 * 109.47175 * 294.23026 * 1 2 3 24 24 H 1.08994 * 109.47248 * 54.22932 * 1 2 3 25 25 H 1.08998 * 109.47442 * 239.99681 * 2 1 3 26 26 H 1.08999 * 109.47419 * 119.99521 * 2 1 3 27 27 H 0.97001 * 120.00573 * 180.02562 * 8 7 5 28 28 H 1.00895 * 111.00060 * 331.14036 * 13 3 2 29 29 H 1.08996 * 110.48825 * 322.42005 * 16 14 13 30 30 H 1.09004 * 110.48605 * 85.06977 * 16 14 13 31 31 H 1.08997 * 109.85413 * 264.10810 * 17 16 14 32 32 H 1.08990 * 110.16297 * 142.75132 * 17 16 14 33 33 H 1.09001 * 109.47438 * 302.80344 * 20 18 17 34 34 H 1.08997 * 109.47495 * 62.80467 * 20 18 17 35 35 H 1.09002 * 109.47448 * 182.81029 * 20 18 17 36 36 H 1.08999 * 110.49190 * 217.71072 * 21 18 17 37 37 H 1.09000 * 110.48494 * 95.06329 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5967 1.9846 -0.8353 5 6 3.5405 1.4448 -0.1394 6 1 4.1538 1.8866 0.6319 7 6 4.1300 0.8881 -1.2545 8 7 3.3833 0.3501 -2.1939 9 14 5.9896 0.8978 -1.4310 10 1 6.5958 1.5579 -0.2470 11 1 6.4851 -0.4988 -1.5273 12 1 6.3665 1.6424 -2.6593 13 7 1.6643 2.0947 1.2615 14 6 1.5333 3.5471 1.0846 15 1 1.2089 3.7836 0.0713 16 6 2.8666 4.2628 1.4153 17 6 2.4400 5.7001 1.7875 18 6 0.9705 5.6222 2.2370 19 1 0.3475 6.2345 1.5850 20 6 0.8385 6.0979 3.6852 21 6 0.5538 4.1410 2.1273 22 1 -0.3633 -1.0225 -0.1033 23 1 -0.3634 0.4218 0.9371 24 1 -0.3633 0.6007 -0.8338 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.7981 -0.0420 -2.9782 28 1 0.8152 1.6978 1.6350 29 1 3.3585 3.7816 2.2605 30 1 3.5221 4.2696 0.5444 31 1 2.5302 6.3501 0.9172 32 1 3.0598 6.0772 2.6008 33 1 1.4833 5.4959 4.3256 34 1 1.1349 7.1446 3.7523 35 1 -0.1967 5.9918 4.0096 36 1 -0.4743 4.0589 1.7748 37 1 0.6698 3.6399 3.0883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070644038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:27 Heat of formation + Delta-G solvation = -45.246660 kcal Electronic energy + Delta-G solvation = -14708.808743 eV Core-core repulsion = 12483.959686 eV Total energy + Delta-G solvation = -2224.849057 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70389 -37.30604 -34.21791 -32.84041 -30.71129 -29.34344 -27.63581 -25.43254 -24.37536 -21.56739 -21.11030 -20.24339 -18.34517 -16.99761 -16.57521 -16.31176 -15.61727 -14.90232 -14.72472 -14.29302 -14.10481 -13.74305 -13.57971 -13.18255 -12.98289 -12.81338 -12.57666 -12.38070 -12.09299 -11.89110 -11.76469 -11.69474 -11.48736 -11.40795 -11.23834 -11.00885 -10.93590 -10.41155 -8.97864 -8.05076 -6.15576 1.38503 1.40603 1.52444 2.44172 3.19833 3.59768 3.76280 3.87662 4.16589 4.47347 4.49568 4.57009 4.58792 4.62622 4.71289 4.75711 4.80314 4.83896 5.04289 5.09057 5.14568 5.18074 5.24846 5.27595 5.34910 5.39465 5.42242 5.51423 5.63847 5.66067 5.79445 5.93136 6.40384 6.59363 6.99096 7.06404 7.53055 8.98592 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.029640 B = 0.009534 C = 0.007566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.436751 B = 2936.018320 C = 3699.691297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.225 3.775 4 H -0.035 1.035 5 C -0.500 4.500 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.680 5.680 14 C 0.086 3.914 15 H 0.017 0.983 16 C -0.103 4.103 17 C -0.116 4.116 18 C -0.091 4.091 19 H 0.075 0.925 20 C -0.137 4.137 21 C -0.114 4.114 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.066 0.934 26 H 0.037 0.963 27 H 0.259 0.741 28 H 0.328 0.672 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 8.177 8.475 13.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.117 3.883 4 H -0.018 1.018 5 C -0.538 4.538 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.564 5.564 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.311 5.311 14 C -0.024 4.024 15 H 0.035 0.965 16 C -0.141 4.141 17 C -0.154 4.154 18 C -0.110 4.110 19 H 0.093 0.907 20 C -0.194 4.194 21 C -0.152 4.152 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.014 8.124 8.542 12.810 hybrid contribution 0.333 -0.292 -1.234 1.311 sum -4.681 7.832 7.308 11.690 Atomic orbital electron populations 1.21739 0.96252 1.01086 1.00476 1.21620 0.94280 0.99123 1.01159 1.19010 0.94162 0.90539 0.84634 1.01781 1.21521 0.92806 1.35744 1.03777 0.93021 1.25685 1.02083 0.95662 0.95775 1.70010 1.36036 1.40514 1.09873 0.85595 0.81156 0.77679 0.77749 1.19494 1.20573 1.20917 1.60646 1.37788 1.02818 1.29894 1.22458 0.95783 0.88168 0.96035 0.96501 1.22253 0.96863 0.95256 0.99768 1.22258 0.96543 0.95641 1.00937 1.21656 0.95796 0.95319 0.98207 0.90698 1.21825 1.02016 1.01187 0.94354 1.22604 0.97781 0.95981 0.98829 0.92388 0.92237 0.94709 0.91544 0.94426 0.93227 0.85336 0.92486 0.94688 0.92202 0.90692 0.92927 0.91752 0.91907 0.91500 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.27 9.65 71.98 0.69 -4.58 16 2 C -0.12 -5.94 5.35 30.59 0.16 -5.77 16 3 C 0.22 11.59 2.02 44.17 0.09 11.67 16 4 H -0.04 -2.05 7.38 -2.39 -0.02 -2.06 16 5 C -0.50 -28.40 8.34 25.60 0.21 -28.18 16 6 H 0.05 2.99 7.48 -2.91 -0.02 2.97 16 7 C 0.01 0.30 5.29 84.66 0.45 0.75 16 8 N -0.92 -54.43 11.30 21.45 0.24 -54.19 16 9 Si 0.95 45.30 29.54 68.60 2.03 47.32 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 N -0.68 -29.26 6.21 -466.71 -2.90 -32.16 16 14 C 0.09 3.30 3.21 46.21 0.15 3.44 16 15 H 0.02 0.73 7.40 -2.39 -0.02 0.72 16 16 C -0.10 -3.86 5.76 31.74 0.18 -3.68 16 17 C -0.12 -3.24 6.46 31.39 0.20 -3.04 16 18 C -0.09 -2.21 3.50 -10.07 -0.04 -2.25 16 19 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 20 C -0.14 -2.64 8.84 71.98 0.64 -2.00 16 21 C -0.11 -3.25 5.73 31.67 0.18 -3.06 16 22 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.06 1.97 6.66 -2.39 -0.02 1.95 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 3.65 5.95 -2.39 -0.01 3.64 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.33 12.57 6.26 -89.70 -0.56 12.01 16 29 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 1.85 7.67 -2.39 -0.02 1.84 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 2.11 7.85 -2.39 -0.02 2.09 16 Total: -1.00 -61.44 287.06 2.74 -58.70 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.45 Total: 17.03 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 2.93 Total: -36.70 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.66 Total: -86.35 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -61.44 2.74 -58.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070644038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.449 kcal (2) G-P(sol) polarization free energy of solvation -61.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds