Wall clock time and date at job start Sun Mar 29 2020 21:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46700 * 2 1 4 4 H 1.09001 * 109.47552 * 305.67496 * 3 2 1 5 5 C 1.50704 * 109.46597 * 185.67599 * 3 2 1 6 6 H 1.08004 * 119.99680 * 240.00209 * 5 3 2 7 7 C 1.37874 * 120.00233 * 60.00251 * 5 3 2 8 8 N 1.31516 * 119.99948 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99830 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46868 * 270.00031 * 9 7 5 11 11 H 1.48504 * 109.46962 * 29.99911 * 9 7 5 12 12 H 1.48503 * 109.46927 * 150.00104 * 9 7 5 13 13 N 1.46893 * 109.47039 * 65.67982 * 3 2 1 14 14 C 1.46901 * 111.00014 * 204.21219 * 13 3 2 15 15 H 1.08996 * 110.43571 * 327.31484 * 14 13 3 16 16 C 1.54890 * 110.48583 * 89.99595 * 14 13 3 17 17 C 1.54897 * 102.74895 * 156.62430 * 16 14 13 18 18 C 1.54270 * 104.19180 * 322.05612 * 17 16 14 19 19 H 1.08993 * 110.07225 * 264.30309 * 18 17 16 20 20 C 1.53002 * 110.02925 * 142.89755 * 18 17 16 21 21 C 1.53868 * 106.59843 * 23.61403 * 18 17 16 22 22 H 1.08997 * 109.47541 * 294.38210 * 1 2 3 23 23 H 1.09000 * 109.47489 * 54.37883 * 1 2 3 24 24 H 1.09001 * 109.47276 * 174.37667 * 1 2 3 25 25 H 1.09003 * 109.46812 * 240.00593 * 2 1 3 26 26 H 1.08994 * 109.46654 * 120.00255 * 2 1 3 27 27 H 0.97004 * 119.99557 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00244 * 328.16394 * 13 3 2 29 29 H 1.09003 * 110.75648 * 274.93715 * 16 14 13 30 30 H 1.09000 * 110.75487 * 38.30911 * 16 14 13 31 31 H 1.09005 * 110.48322 * 203.38040 * 17 16 14 32 32 H 1.08995 * 110.48714 * 80.73630 * 17 16 14 33 33 H 1.09004 * 109.47179 * 302.83498 * 20 18 17 34 34 H 1.09004 * 109.47500 * 62.82911 * 20 18 17 35 35 H 1.08998 * 109.47361 * 182.83321 * 20 18 17 36 36 H 1.09007 * 110.02983 * 240.71072 * 21 18 17 37 37 H 1.08996 * 110.07310 * 119.30931 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9849 -0.8348 5 6 3.5404 1.4448 -0.1405 6 1 4.1543 1.8863 0.6306 7 6 4.1294 0.8833 -1.2535 8 7 5.4389 0.8858 -1.3763 9 14 3.0676 0.1191 -2.5869 10 1 2.8503 -1.3183 -2.2834 11 1 1.7582 0.8177 -2.6381 12 1 3.7504 0.2501 -3.8992 13 7 1.6653 2.0942 1.2620 14 6 1.6027 3.5532 1.1028 15 1 2.3398 3.8884 0.3731 16 6 0.1787 3.9918 0.6797 17 6 0.1238 5.4685 1.1439 18 6 0.8871 5.4722 2.4845 19 1 0.1859 5.3848 3.3144 20 6 1.7013 6.7604 2.6204 21 6 1.8274 4.2546 2.4583 22 1 -0.3634 0.4242 0.9360 23 1 -0.3634 0.5985 -0.8354 24 1 -0.3634 -1.0227 -0.1007 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 5.8533 0.4904 -2.1592 28 1 0.7912 1.7308 1.6112 29 1 0.0583 3.9220 -0.4014 30 1 -0.5770 3.3971 1.1928 31 1 -0.9092 5.7836 1.2921 32 1 0.6206 6.1146 0.4202 33 1 2.3816 6.8513 1.7735 34 1 1.0268 7.6166 2.6379 35 1 2.2757 6.7313 3.5463 36 1 1.5821 3.5757 3.2751 37 1 2.8640 4.5806 2.5428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070644042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:29 Heat of formation + Delta-G solvation = -20.985637 kcal Electronic energy + Delta-G solvation = -14764.454002 eV Core-core repulsion = 12540.656981 eV Total energy + Delta-G solvation = -2223.797020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.51410 -35.86889 -32.29842 -31.63910 -29.56506 -27.82372 -26.44717 -24.03658 -22.46262 -20.22036 -19.86173 -19.07177 -16.64348 -15.74338 -15.13001 -14.61385 -13.98562 -13.59206 -13.23987 -12.96388 -12.86342 -12.52554 -12.10761 -11.91933 -11.79390 -11.43291 -11.22100 -10.75678 -10.58355 -10.51149 -10.43521 -10.32060 -10.18068 -9.94280 -9.83188 -9.34740 -9.13753 -8.48986 -7.25392 -6.00594 -3.96937 3.27651 3.38119 3.40102 4.43570 4.81735 4.96680 5.02827 5.25059 5.35829 5.54869 5.68881 5.73385 5.76429 5.84426 5.86015 5.95801 5.99566 6.08470 6.12885 6.17988 6.24550 6.30583 6.40283 6.49536 6.58861 6.65645 6.71492 6.74376 6.84044 6.94619 7.25872 7.77030 8.08622 8.35236 8.82598 9.12387 9.62994 11.12958 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.009231 C = 0.008171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.702690 B = 3032.657814 C = 3425.902823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.135 4.135 3 C 0.190 3.810 4 H 0.000 1.000 5 C -0.494 4.494 6 H 0.080 0.920 7 C 0.065 3.935 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.298 1.298 13 N -0.669 5.669 14 C 0.093 3.907 15 H 0.087 0.913 16 C -0.156 4.156 17 C -0.116 4.116 18 C -0.098 4.098 19 H 0.064 0.936 20 C -0.143 4.143 21 C -0.109 4.109 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.262 0.738 28 H 0.319 0.681 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.164 6.406 4.767 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.081 3.919 4 H 0.017 0.983 5 C -0.533 4.533 6 H 0.098 0.902 7 C -0.136 4.136 8 N -0.541 5.541 9 Si 0.713 3.287 10 H -0.206 1.206 11 H -0.193 1.193 12 H -0.226 1.226 13 N -0.299 5.299 14 C -0.018 4.018 15 H 0.106 0.894 16 C -0.195 4.195 17 C -0.154 4.154 18 C -0.117 4.117 19 H 0.083 0.917 20 C -0.201 4.201 21 C -0.147 4.147 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.345 6.338 4.896 13.082 hybrid contribution -1.307 -0.466 -1.363 1.945 sum -11.652 5.872 3.532 13.517 Atomic orbital electron populations 1.21908 0.98240 1.00454 1.00728 1.22112 0.92922 1.00586 1.01712 1.19620 0.96713 0.89162 0.86400 0.98251 1.21070 0.89259 1.37225 1.05701 0.90167 1.24969 0.94753 0.96070 0.97779 1.69894 1.08924 1.46033 1.29282 0.86947 0.80771 0.79773 0.81237 1.20645 1.19331 1.22562 1.60527 1.35451 1.02514 1.31380 1.22347 0.94358 0.88799 0.96261 0.89430 1.23257 0.99379 0.96234 1.00626 1.22348 0.99284 0.96932 0.96822 1.21751 0.97167 0.95420 0.97351 0.91746 1.21884 0.99681 0.96759 1.01737 1.22219 0.98955 0.95258 0.98313 0.93144 0.93631 0.93708 0.92922 0.91386 0.92806 0.86339 0.92136 0.92084 0.92571 0.91706 0.92465 0.93391 0.92912 0.91679 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.64 37.16 0.36 -2.34 16 2 C -0.14 -2.93 5.02 -26.73 -0.13 -3.07 16 3 C 0.19 4.47 1.49 -68.87 -0.10 4.36 16 4 H 0.00 0.00 6.92 -51.93 -0.36 -0.36 16 5 C -0.49 -14.06 9.08 -34.44 -0.31 -14.37 16 6 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 7 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 8 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 9 Si 0.88 22.16 24.41 -169.99 -4.15 18.01 16 10 H -0.28 -6.84 6.82 56.52 0.39 -6.46 16 11 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 12 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 13 N -0.67 -13.66 6.08 -99.22 -0.60 -14.26 16 14 C 0.09 1.71 2.93 -66.05 -0.19 1.52 16 15 H 0.09 1.86 7.66 -51.93 -0.40 1.46 16 16 C -0.16 -2.39 6.45 -24.73 -0.16 -2.55 16 17 C -0.12 -1.52 6.36 -25.07 -0.16 -1.68 16 18 C -0.10 -1.27 3.50 -89.50 -0.31 -1.59 16 19 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.14 -1.68 8.85 37.16 0.33 -1.35 16 21 C -0.11 -1.73 6.19 -25.62 -0.16 -1.89 16 22 H 0.05 0.77 6.65 -51.93 -0.35 0.43 16 23 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 1.23 3.21 -51.93 -0.17 1.06 16 26 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.32 5.78 6.10 -39.29 -0.24 5.54 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.88 7.79 -51.93 -0.40 0.48 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.85 7.84 -51.93 -0.41 0.44 16 33 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 1.03 8.04 -51.92 -0.42 0.61 16 37 H 0.06 1.07 7.67 -51.93 -0.40 0.67 16 LS Contribution 281.39 15.07 4.24 4.24 Total: -1.00 -29.73 281.39 -7.23 -36.96 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.55 Total: 3.39 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -0.94 Total: -21.14 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.17 Total: -41.46 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.15 Total: 18.01 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.73 -7.23 -36.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070644042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.976 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds