Wall clock time and date at job start Sun Mar 29 2020 21:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46700 * 2 1 4 4 H 1.09001 * 109.47552 * 305.67496 * 3 2 1 5 5 C 1.50704 * 109.46597 * 185.67599 * 3 2 1 6 6 H 1.08004 * 119.99680 * 240.00209 * 5 3 2 7 7 C 1.37874 * 120.00233 * 60.00251 * 5 3 2 8 8 N 1.31516 * 119.99948 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99830 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.46868 * 270.00031 * 9 7 5 11 11 H 1.48504 * 109.46962 * 29.99911 * 9 7 5 12 12 H 1.48503 * 109.46927 * 150.00104 * 9 7 5 13 13 N 1.46893 * 109.47039 * 65.67982 * 3 2 1 14 14 C 1.46901 * 111.00014 * 204.21219 * 13 3 2 15 15 H 1.08996 * 110.43571 * 327.31484 * 14 13 3 16 16 C 1.54890 * 110.48583 * 89.99595 * 14 13 3 17 17 C 1.54897 * 102.74895 * 156.62430 * 16 14 13 18 18 C 1.54270 * 104.19180 * 322.05612 * 17 16 14 19 19 H 1.08993 * 110.07225 * 264.30309 * 18 17 16 20 20 C 1.53002 * 110.02925 * 142.89755 * 18 17 16 21 21 C 1.53868 * 106.59843 * 23.61403 * 18 17 16 22 22 H 1.08997 * 109.47541 * 294.38210 * 1 2 3 23 23 H 1.09000 * 109.47489 * 54.37883 * 1 2 3 24 24 H 1.09001 * 109.47276 * 174.37667 * 1 2 3 25 25 H 1.09003 * 109.46812 * 240.00593 * 2 1 3 26 26 H 1.08994 * 109.46654 * 120.00255 * 2 1 3 27 27 H 0.97004 * 119.99557 * 179.97438 * 8 7 5 28 28 H 1.00899 * 111.00244 * 328.16394 * 13 3 2 29 29 H 1.09003 * 110.75648 * 274.93715 * 16 14 13 30 30 H 1.09000 * 110.75487 * 38.30911 * 16 14 13 31 31 H 1.09005 * 110.48322 * 203.38040 * 17 16 14 32 32 H 1.08995 * 110.48714 * 80.73630 * 17 16 14 33 33 H 1.09004 * 109.47179 * 302.83498 * 20 18 17 34 34 H 1.09004 * 109.47500 * 62.82911 * 20 18 17 35 35 H 1.08998 * 109.47361 * 182.83321 * 20 18 17 36 36 H 1.09007 * 110.02983 * 240.71072 * 21 18 17 37 37 H 1.08996 * 110.07310 * 119.30931 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9849 -0.8348 5 6 3.5404 1.4448 -0.1405 6 1 4.1543 1.8863 0.6306 7 6 4.1294 0.8833 -1.2535 8 7 5.4389 0.8858 -1.3763 9 14 3.0676 0.1191 -2.5869 10 1 2.8503 -1.3183 -2.2834 11 1 1.7582 0.8177 -2.6381 12 1 3.7504 0.2501 -3.8992 13 7 1.6653 2.0942 1.2620 14 6 1.6027 3.5532 1.1028 15 1 2.3398 3.8884 0.3731 16 6 0.1787 3.9918 0.6797 17 6 0.1238 5.4685 1.1439 18 6 0.8871 5.4722 2.4845 19 1 0.1859 5.3848 3.3144 20 6 1.7013 6.7604 2.6204 21 6 1.8274 4.2546 2.4583 22 1 -0.3634 0.4242 0.9360 23 1 -0.3634 0.5985 -0.8354 24 1 -0.3634 -1.0227 -0.1007 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 5.8533 0.4904 -2.1592 28 1 0.7912 1.7308 1.6112 29 1 0.0583 3.9220 -0.4014 30 1 -0.5770 3.3971 1.1928 31 1 -0.9092 5.7836 1.2921 32 1 0.6206 6.1146 0.4202 33 1 2.3816 6.8513 1.7735 34 1 1.0268 7.6166 2.6379 35 1 2.2757 6.7313 3.5463 36 1 1.5821 3.5757 3.2751 37 1 2.8640 4.5806 2.5428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070644042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:29 Heat of formation + Delta-G solvation = -40.702550 kcal Electronic energy + Delta-G solvation = -14765.308991 eV Core-core repulsion = 12540.656981 eV Total energy + Delta-G solvation = -2224.652010 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.87521 -37.48613 -34.34413 -33.17535 -30.80975 -29.40295 -28.10672 -25.29327 -24.19787 -21.74038 -21.50314 -20.28009 -18.78713 -17.27024 -16.63506 -16.31979 -15.60699 -15.10261 -14.73548 -14.35117 -14.21991 -14.01469 -13.59728 -13.54624 -13.08820 -12.86399 -12.76179 -12.45358 -12.23610 -12.02597 -11.76136 -11.59464 -11.51427 -11.46726 -11.24346 -11.20379 -11.08693 -10.66609 -8.92224 -8.27893 -6.29223 1.27034 1.32345 1.42761 2.30652 3.04947 3.45853 3.80714 3.83968 4.04872 4.28993 4.33969 4.41367 4.46479 4.53614 4.61715 4.74462 4.78012 4.79818 4.87686 5.00687 5.02874 5.08108 5.11207 5.12230 5.20069 5.25100 5.36402 5.38326 5.42767 5.51162 5.64421 5.73850 6.13554 6.57190 6.77594 7.03367 7.35477 8.89761 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.009231 C = 0.008171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.702690 B = 3032.657814 C = 3425.902823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.198 3.802 4 H -0.008 1.008 5 C -0.499 4.499 6 H 0.028 0.972 7 C 0.005 3.995 8 N -0.953 5.953 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.249 1.249 12 H -0.299 1.299 13 N -0.678 5.678 14 C 0.086 3.914 15 H 0.044 0.956 16 C -0.147 4.147 17 C -0.111 4.111 18 C -0.091 4.091 19 H 0.085 0.915 20 C -0.142 4.142 21 C -0.106 4.106 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.264 0.736 28 H 0.336 0.664 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.579 6.499 4.999 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.088 3.912 4 H 0.009 0.991 5 C -0.538 4.538 6 H 0.047 0.953 7 C -0.191 4.191 8 N -0.594 5.594 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.173 1.173 12 H -0.227 1.227 13 N -0.310 5.310 14 C -0.025 4.025 15 H 0.062 0.938 16 C -0.187 4.187 17 C -0.148 4.148 18 C -0.110 4.110 19 H 0.104 0.896 20 C -0.200 4.200 21 C -0.144 4.144 22 H 0.089 0.911 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.790 6.442 5.154 16.069 hybrid contribution -0.143 -0.436 -1.335 1.412 sum -13.933 6.006 3.819 15.645 Atomic orbital electron populations 1.21832 0.94227 1.02388 1.02036 1.22004 0.96488 0.98185 1.00728 1.19360 0.93233 0.91031 0.87530 0.99059 1.21349 0.91958 1.36169 1.04340 0.95319 1.25852 0.95996 0.96793 1.00498 1.70063 1.11146 1.47786 1.30419 0.85832 0.79433 0.79575 0.77437 1.19044 1.17289 1.22734 1.60375 1.36814 1.03798 1.29986 1.22345 0.95606 0.87708 0.96824 0.93782 1.23155 0.97109 0.98114 1.00281 1.22347 1.00888 0.95139 0.96476 1.21728 0.96824 0.94257 0.98165 0.89639 1.21870 0.99793 0.96949 1.01356 1.22184 0.98918 0.96580 0.96766 0.91079 0.93328 0.91286 0.94393 0.91975 0.92718 0.84425 0.93026 0.90278 0.89791 0.92088 0.93887 0.91221 0.92537 0.91445 0.93615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.64 71.98 0.69 -3.83 16 2 C -0.14 -5.66 5.02 30.59 0.15 -5.50 16 3 C 0.20 9.33 1.49 44.17 0.07 9.40 16 4 H -0.01 -0.39 6.92 -2.39 -0.02 -0.41 16 5 C -0.50 -29.67 9.08 25.60 0.23 -29.44 16 6 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 7 C 0.00 0.29 5.45 84.65 0.46 0.75 16 8 N -0.95 -61.58 13.96 21.45 0.30 -61.28 16 9 Si 0.95 46.10 24.41 68.60 1.67 47.78 16 10 H -0.26 -12.13 6.82 99.48 0.68 -11.45 16 11 H -0.25 -11.19 6.53 99.48 0.65 -10.54 16 12 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 13 N -0.68 -27.59 6.08 -467.83 -2.85 -30.43 16 14 C 0.09 3.16 2.93 45.99 0.13 3.29 16 15 H 0.04 1.98 7.66 -2.39 -0.02 1.96 16 16 C -0.15 -4.21 6.45 31.89 0.21 -4.01 16 17 C -0.11 -2.58 6.36 31.67 0.20 -2.38 16 18 C -0.09 -2.14 3.50 -10.07 -0.04 -2.18 16 19 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 20 C -0.14 -3.06 8.85 71.98 0.64 -2.43 16 21 C -0.11 -3.32 6.19 31.32 0.19 -3.13 16 22 H 0.07 1.88 6.65 -2.39 -0.02 1.86 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.04 1.68 3.21 -2.39 -0.01 1.67 16 26 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 28 H 0.34 11.50 6.10 -89.69 -0.55 10.96 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 1.99 7.79 -2.39 -0.02 1.97 16 31 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.06 1.47 7.84 -2.39 -0.02 1.46 16 33 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 34 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.07 2.06 8.04 -2.38 -0.02 2.04 16 37 H 0.04 1.57 7.67 -2.39 -0.02 1.55 16 Total: -1.00 -67.49 281.39 2.46 -65.03 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.39 Total: 18.37 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 2.94 Total: -39.47 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -2.55 Total: -91.71 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.67 Total: 47.78 kcal Total: -67.49 2.46 -65.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070644042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.327 kcal (2) G-P(sol) polarization free energy of solvation -67.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds