Wall clock time and date at job start Sun Mar 29 2020 21:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46798 * 2 1 4 4 N 1.46499 * 109.46944 * 120.00236 * 2 1 3 5 5 C 1.36935 * 119.99857 * 117.37381 * 4 2 1 6 6 H 1.07997 * 120.00179 * 151.07789 * 5 4 2 7 7 C 1.38815 * 119.99858 * 331.06880 * 5 4 2 8 8 N 1.31615 * 120.00454 * 341.65228 * 7 5 4 9 9 Si 1.86804 * 119.99725 * 161.64490 * 7 5 4 10 10 H 1.48503 * 109.47002 * 60.00621 * 9 7 5 11 11 H 1.48502 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47470 * 300.00276 * 9 7 5 13 13 C 1.46494 * 120.00022 * 297.36645 * 4 2 1 14 14 C 1.52998 * 109.47303 * 120.00304 * 13 4 2 15 15 C 1.52996 * 109.47334 * 179.97438 * 14 13 4 16 16 C 1.52998 * 109.47492 * 300.00083 * 15 14 13 17 17 C 1.52998 * 109.46702 * 59.99989 * 16 15 14 18 18 C 1.52997 * 109.47414 * 299.99728 * 17 16 15 19 19 H 1.09000 * 109.47149 * 299.99995 * 1 2 3 20 20 H 1.08997 * 109.47116 * 59.99894 * 1 2 3 21 21 H 1.09001 * 109.46873 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46765 * 240.00676 * 2 1 3 23 23 H 1.09009 * 109.46990 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47373 * 299.99948 * 3 2 1 25 25 H 1.09000 * 109.47267 * 60.00077 * 3 2 1 26 26 H 0.96995 * 120.00523 * 179.97438 * 8 7 5 27 27 H 1.09007 * 109.47262 * 0.02562 * 13 4 2 28 28 H 1.08998 * 109.46886 * 300.00561 * 14 13 4 29 29 H 1.09007 * 109.47083 * 59.99741 * 14 13 4 30 30 H 1.09005 * 109.47170 * 179.97438 * 15 14 13 31 31 H 1.09004 * 109.46851 * 60.00509 * 15 14 13 32 32 H 1.08997 * 109.46827 * 299.99814 * 16 15 14 33 33 H 1.08998 * 109.47157 * 179.97438 * 16 15 14 34 34 H 1.09003 * 109.46588 * 180.02562 * 17 16 15 35 35 H 1.08997 * 109.47622 * 60.00312 * 17 16 15 36 36 H 1.08997 * 109.47202 * 300.00841 * 18 17 16 37 37 H 1.08999 * 109.47504 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.7606 -1.8346 1.0712 6 1 3.4909 -2.0895 1.8248 7 6 2.5742 -2.6666 -0.0242 8 7 1.4745 -2.5743 -0.7413 9 14 3.8846 -3.9174 -0.4806 10 1 4.0890 -4.8558 0.6520 11 1 3.4481 -4.6762 -1.6801 12 1 5.1585 -3.2141 -0.7769 13 6 1.7126 -0.1575 2.5259 14 6 0.9247 -1.1982 3.3240 15 6 0.6060 -0.6416 4.7130 16 6 1.9103 -0.3183 5.4446 17 6 2.6981 0.7225 4.6465 18 6 3.0169 0.1659 3.2575 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8901 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.3444 -3.1555 -1.5069 27 1 1.1170 0.7500 2.4255 28 1 -0.0042 -1.4289 2.8026 29 1 1.5200 -2.1059 3.4245 30 1 0.0443 -1.3830 5.2814 31 1 0.0109 0.2661 4.6129 32 1 2.5053 -1.2261 5.5447 33 1 1.6832 0.0786 6.4340 34 1 3.6275 0.9525 5.1675 35 1 2.1031 1.6303 4.5464 36 1 3.6119 -0.7419 3.3576 37 1 3.5786 0.9072 2.6891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070650065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:43 Heat of formation + Delta-G solvation = -8.398088 kcal Electronic energy + Delta-G solvation = -15347.357637 eV Core-core repulsion = 13124.106454 eV Total energy + Delta-G solvation = -2223.251183 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.19568 -35.44232 -31.74365 -30.70782 -30.04146 -27.52711 -25.92665 -23.77984 -21.76536 -21.37008 -19.17603 -19.00068 -16.30378 -14.93656 -14.36098 -14.09242 -13.72354 -13.48958 -13.24357 -12.61434 -12.36358 -11.93354 -11.61786 -11.50303 -11.34765 -11.09652 -10.84507 -10.80307 -10.51443 -10.41004 -10.19157 -10.06867 -10.01257 -9.80265 -9.37922 -9.18233 -9.09876 -8.29574 -6.52044 -5.69751 -3.11743 3.42665 3.48522 3.50361 4.56384 5.22191 5.34780 5.38471 5.49673 5.67024 5.92839 6.05442 6.13375 6.16841 6.19549 6.25000 6.32328 6.45399 6.53122 6.56286 6.61315 6.65501 6.69672 6.81047 6.85193 6.95330 6.99678 7.05625 7.14668 7.34117 7.41329 7.75688 7.83384 7.95892 8.59603 9.35086 9.99391 10.52934 11.37270 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027558 B = 0.012295 C = 0.010373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.792650 B = 2276.768090 C = 2698.600466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.181 3.819 3 C -0.163 4.163 4 N -0.581 5.581 5 C -0.244 4.244 6 H 0.063 0.937 7 C 0.003 3.997 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.179 3.821 14 C -0.121 4.121 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.126 4.126 19 H 0.021 0.979 20 H 0.025 0.975 21 H 0.071 0.929 22 H 0.097 0.903 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.251 0.749 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 5.564 6.763 8.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 C -0.222 4.222 4 N -0.301 5.301 5 C -0.374 4.374 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.071 3.929 14 C -0.160 4.160 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.165 4.165 19 H 0.040 0.960 20 H 0.044 0.956 21 H 0.090 0.910 22 H 0.115 0.885 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.381 5.455 6.585 8.560 hybrid contribution 0.617 -0.731 -0.279 0.996 sum 0.236 4.724 6.306 7.883 Atomic orbital electron populations 1.22126 0.98984 1.01941 0.97142 1.20266 0.91473 0.88564 0.92293 1.22411 1.00566 1.00106 0.99116 1.44037 1.61058 1.26379 0.98590 1.19014 1.12470 0.98354 1.07534 0.91943 1.24979 0.96377 0.97465 1.00708 1.70015 1.23503 1.40375 1.20235 0.86493 0.82010 0.81322 0.77674 1.21101 1.21840 1.21263 1.20220 0.92397 0.94296 0.85940 1.21927 1.00584 1.00213 0.93279 1.21568 0.96525 1.00032 0.97466 1.21497 0.97079 0.99133 0.97572 1.21523 0.98884 0.98035 0.96924 1.21971 1.00092 1.00446 0.94020 0.95991 0.95605 0.90976 0.88527 0.93705 0.94436 0.94488 0.93861 0.93416 0.92733 0.91868 0.93227 0.93001 0.92331 0.93315 0.93217 0.92872 0.92076 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.05 37.16 0.34 -2.84 16 2 C 0.18 4.23 2.33 -67.93 -0.16 4.08 16 3 C -0.16 -3.26 9.14 37.16 0.34 -2.92 16 4 N -0.58 -14.02 2.32 -158.15 -0.37 -14.39 16 5 C -0.24 -6.49 8.34 -15.06 -0.13 -6.61 16 6 H 0.06 1.67 6.78 -52.49 -0.36 1.31 16 7 C 0.00 0.08 4.85 -17.43 -0.08 0.00 16 8 N -0.90 -25.23 10.30 55.49 0.57 -24.66 16 9 Si 0.89 21.69 29.59 -169.99 -5.03 16.66 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.18 3.70 1.73 -67.93 -0.12 3.58 16 14 C -0.12 -2.41 5.17 -26.73 -0.14 -2.55 16 15 C -0.12 -1.88 5.92 -26.73 -0.16 -2.04 16 16 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 17 C -0.12 -1.77 5.92 -26.73 -0.16 -1.92 16 18 C -0.13 -2.36 5.17 -26.73 -0.14 -2.49 16 19 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 20 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.07 1.81 7.33 -51.93 -0.38 1.43 16 22 H 0.10 2.59 5.86 -51.93 -0.30 2.28 16 23 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.69 6.90 -51.93 -0.36 0.34 16 26 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.05 0.98 6.05 -51.93 -0.31 0.66 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 1.38 7.66 -51.93 -0.40 0.98 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.23 6.96 -51.93 -0.36 0.87 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 279.69 15.07 4.21 4.21 Total: -1.00 -27.05 279.69 -7.80 -34.85 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.63 Total: -1.09 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -0.56 Total: -15.58 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.21 Total: -39.05 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.05 -7.80 -34.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070650065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.456 kcal (2) G-P(sol) polarization free energy of solvation -27.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds