Wall clock time and date at job start Sun Mar 29 2020 21:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46798 * 2 1 4 4 N 1.46499 * 109.46944 * 120.00236 * 2 1 3 5 5 C 1.36935 * 119.99857 * 117.37381 * 4 2 1 6 6 H 1.07997 * 120.00179 * 151.07789 * 5 4 2 7 7 C 1.38815 * 119.99858 * 331.06880 * 5 4 2 8 8 N 1.31615 * 120.00454 * 341.65228 * 7 5 4 9 9 Si 1.86804 * 119.99725 * 161.64490 * 7 5 4 10 10 H 1.48503 * 109.47002 * 60.00621 * 9 7 5 11 11 H 1.48502 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47470 * 300.00276 * 9 7 5 13 13 C 1.46494 * 120.00022 * 297.36645 * 4 2 1 14 14 C 1.52998 * 109.47303 * 120.00304 * 13 4 2 15 15 C 1.52996 * 109.47334 * 179.97438 * 14 13 4 16 16 C 1.52998 * 109.47492 * 300.00083 * 15 14 13 17 17 C 1.52998 * 109.46702 * 59.99989 * 16 15 14 18 18 C 1.52997 * 109.47414 * 299.99728 * 17 16 15 19 19 H 1.09000 * 109.47149 * 299.99995 * 1 2 3 20 20 H 1.08997 * 109.47116 * 59.99894 * 1 2 3 21 21 H 1.09001 * 109.46873 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46765 * 240.00676 * 2 1 3 23 23 H 1.09009 * 109.46990 * 179.97438 * 3 2 1 24 24 H 1.08997 * 109.47373 * 299.99948 * 3 2 1 25 25 H 1.09000 * 109.47267 * 60.00077 * 3 2 1 26 26 H 0.96995 * 120.00523 * 179.97438 * 8 7 5 27 27 H 1.09007 * 109.47262 * 0.02562 * 13 4 2 28 28 H 1.08998 * 109.46886 * 300.00561 * 14 13 4 29 29 H 1.09007 * 109.47083 * 59.99741 * 14 13 4 30 30 H 1.09005 * 109.47170 * 179.97438 * 15 14 13 31 31 H 1.09004 * 109.46851 * 60.00509 * 15 14 13 32 32 H 1.08997 * 109.46827 * 299.99814 * 16 15 14 33 33 H 1.08998 * 109.47157 * 179.97438 * 16 15 14 34 34 H 1.09003 * 109.46588 * 180.02562 * 17 16 15 35 35 H 1.08997 * 109.47622 * 60.00312 * 17 16 15 36 36 H 1.08997 * 109.47202 * 300.00841 * 18 17 16 37 37 H 1.08999 * 109.47504 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.7606 -1.8346 1.0712 6 1 3.4909 -2.0895 1.8248 7 6 2.5742 -2.6666 -0.0242 8 7 1.4745 -2.5743 -0.7413 9 14 3.8846 -3.9174 -0.4806 10 1 4.0890 -4.8558 0.6520 11 1 3.4481 -4.6762 -1.6801 12 1 5.1585 -3.2141 -0.7769 13 6 1.7126 -0.1575 2.5259 14 6 0.9247 -1.1982 3.3240 15 6 0.6060 -0.6416 4.7130 16 6 1.9103 -0.3183 5.4446 17 6 2.6981 0.7225 4.6465 18 6 3.0169 0.1659 3.2575 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8901 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.3444 -3.1555 -1.5069 27 1 1.1170 0.7500 2.4255 28 1 -0.0042 -1.4289 2.8026 29 1 1.5200 -2.1059 3.4245 30 1 0.0443 -1.3830 5.2814 31 1 0.0109 0.2661 4.6129 32 1 2.5053 -1.2261 5.5447 33 1 1.6832 0.0786 6.4340 34 1 3.6275 0.9525 5.1675 35 1 2.1031 1.6303 4.5464 36 1 3.6119 -0.7419 3.3576 37 1 3.5786 0.9072 2.6891 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070650065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:42 Heat of formation + Delta-G solvation = -21.727866 kcal Electronic energy + Delta-G solvation = -15347.935660 eV Core-core repulsion = 13124.106454 eV Total energy + Delta-G solvation = -2223.829206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.78137 -37.10761 -33.73769 -32.37310 -31.45500 -29.27247 -27.64492 -25.71856 -23.18438 -22.91421 -20.88312 -20.62683 -18.13887 -16.82965 -16.02803 -15.86705 -15.35658 -14.92478 -14.67098 -14.34682 -14.10908 -13.57946 -13.18994 -13.13695 -12.91333 -12.73500 -12.71677 -12.68395 -12.14896 -12.03623 -11.84494 -11.75291 -11.67468 -11.42580 -10.96903 -10.86844 -10.75093 -10.30800 -8.47489 -7.75896 -5.18790 1.46579 1.48793 1.54321 2.56603 3.36634 3.62355 4.01434 4.11442 4.29001 4.49324 4.56045 4.58438 4.73121 4.75778 4.81248 4.88268 4.92561 4.93257 4.99058 5.08134 5.15484 5.19147 5.26026 5.36343 5.39770 5.45511 5.46477 5.52491 5.71866 5.77657 5.81031 5.85828 6.06238 6.55052 7.31163 8.06313 8.52114 9.28098 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.027558 B = 0.012295 C = 0.010373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.792650 B = 2276.768090 C = 2698.600466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.174 3.826 3 C -0.149 4.149 4 N -0.595 5.595 5 C -0.243 4.243 6 H 0.056 0.944 7 C -0.046 4.046 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.282 1.282 11 H -0.297 1.297 12 H -0.284 1.284 13 C 0.175 3.825 14 C -0.114 4.114 15 C -0.111 4.111 16 C -0.113 4.113 17 C -0.109 4.109 18 C -0.119 4.119 19 H 0.035 0.965 20 H 0.043 0.957 21 H 0.035 0.965 22 H 0.059 0.941 23 H 0.037 0.963 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.244 0.756 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.169 7.127 8.382 11.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.067 3.933 3 C -0.208 4.208 4 N -0.315 5.315 5 C -0.374 4.374 6 H 0.074 0.926 7 C -0.242 4.242 8 N -0.566 5.566 9 Si 0.779 3.221 10 H -0.208 1.208 11 H -0.223 1.223 12 H -0.211 1.211 13 C 0.069 3.931 14 C -0.153 4.153 15 C -0.149 4.149 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.158 4.158 19 H 0.054 0.946 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.214 7.034 8.228 10.827 hybrid contribution 0.550 -1.198 -0.766 1.525 sum 0.336 5.836 7.462 9.479 Atomic orbital electron populations 1.21937 0.98225 1.00045 0.98604 1.20252 0.92088 0.90143 0.90772 1.22214 1.00038 0.97730 1.00809 1.44255 1.61048 1.25960 1.00252 1.19167 1.12250 0.98905 1.07065 0.92618 1.25572 0.97974 0.99421 1.01229 1.70163 1.24760 1.41202 1.20458 0.85620 0.79956 0.79476 0.77032 1.20809 1.22322 1.21056 1.20404 0.93686 0.94387 0.84603 1.21808 0.98592 0.99110 0.95823 1.21517 0.97809 1.00745 0.94819 1.21495 0.95889 0.98815 0.98812 1.21492 1.00260 0.98415 0.94550 1.21854 0.98335 0.99443 0.96191 0.94603 0.93837 0.94546 0.92254 0.94363 0.92382 0.93042 0.94634 0.92623 0.95345 0.94729 0.91991 0.91546 0.93213 0.90106 0.91253 0.91396 0.94338 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 9.05 71.98 0.65 -5.06 16 2 C 0.17 8.16 2.33 44.99 0.10 8.27 16 3 C -0.15 -5.71 9.14 71.98 0.66 -5.05 16 4 N -0.59 -28.97 2.32 -654.25 -1.52 -30.49 16 5 C -0.24 -13.21 8.34 84.03 0.70 -12.51 16 6 H 0.06 3.05 6.78 -2.91 -0.02 3.03 16 7 C -0.05 -2.58 4.85 84.86 0.41 -2.17 16 8 N -0.92 -53.43 10.30 21.65 0.22 -53.20 16 9 Si 0.95 45.61 29.59 68.60 2.03 47.64 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 13 C 0.18 7.12 1.73 44.99 0.08 7.20 16 14 C -0.11 -4.53 5.17 30.59 0.16 -4.37 16 15 C -0.11 -3.26 5.92 30.59 0.18 -3.08 16 16 C -0.11 -2.94 5.92 30.59 0.18 -2.76 16 17 C -0.11 -2.96 5.92 30.59 0.18 -2.78 16 18 C -0.12 -4.28 5.17 30.60 0.16 -4.13 16 19 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 20 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.04 1.85 7.33 -2.39 -0.02 1.83 16 22 H 0.06 3.25 5.86 -2.39 -0.01 3.24 16 23 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 25 H 0.05 1.80 6.90 -2.39 -0.02 1.79 16 26 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.06 2.16 6.05 -2.38 -0.01 2.15 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.03 1.54 7.66 -2.38 -0.02 1.52 16 30 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.54 6.96 -2.39 -0.02 1.52 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -59.17 279.69 5.20 -53.96 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.00 Total: 8.52 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 3.46 Total: -26.44 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -1.29 Total: -83.69 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -59.17 5.20 -53.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070650065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.233 kcal (2) G-P(sol) polarization free energy of solvation -59.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds