Wall clock time and date at job start Sun Mar 29 2020 21:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.67583 * 2 1 4 4 C 1.54961 * 110.76665 * 123.40119 * 2 1 3 5 5 C 1.54270 * 104.16191 * 156.22182 * 4 2 1 6 6 C 1.53869 * 106.63967 * 336.44607 * 5 4 2 7 7 C 1.54268 * 106.60115 * 359.97438 * 6 5 4 8 8 H 1.09000 * 110.48806 * 264.79985 * 7 6 5 9 9 N 1.46905 * 110.49065 * 142.28923 * 7 6 5 10 10 C 1.46895 * 110.99825 * 86.45159 * 9 7 6 11 11 C 1.52997 * 109.46778 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47317 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47626 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99873 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00601 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00260 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99670 * 0.02562 * 15 13 12 18 18 H 1.48490 * 109.47357 * 89.99839 * 17 15 13 19 19 H 1.48503 * 109.46936 * 209.99865 * 17 15 13 20 20 H 1.48499 * 109.46940 * 329.99563 * 17 15 13 21 21 H 1.09005 * 109.47018 * 183.23026 * 1 2 3 22 22 H 1.08996 * 109.47051 * 303.23017 * 1 2 3 23 23 H 1.08997 * 109.47118 * 63.22978 * 1 2 3 24 24 H 1.08997 * 110.47708 * 37.56779 * 4 2 1 25 25 H 1.09002 * 110.53308 * 274.90171 * 4 2 1 26 26 H 1.09002 * 110.03399 * 217.13605 * 5 4 2 27 27 H 1.08995 * 110.02943 * 95.75505 * 5 4 2 28 28 H 1.08999 * 110.03405 * 119.26051 * 6 5 4 29 29 H 1.08996 * 110.03529 * 240.68999 * 6 5 4 30 30 H 1.00905 * 110.99274 * 322.50088 * 9 7 6 31 31 H 1.08998 * 109.47702 * 300.00210 * 10 9 7 32 32 H 1.08998 * 109.46942 * 60.00393 * 10 9 7 33 33 H 1.08993 * 109.47577 * 300.00380 * 11 10 9 34 34 H 1.08998 * 109.47074 * 60.00460 * 11 10 9 35 35 H 1.08998 * 109.47417 * 300.00352 * 12 11 10 36 36 H 1.09007 * 109.46858 * 60.00403 * 12 11 10 37 37 H 0.97004 * 119.99411 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0794 -0.7976 1.2096 5 6 3.4932 -1.2282 0.7671 6 6 3.4932 -1.2254 -0.7716 7 6 2.0790 -0.7937 -1.2116 8 1 1.4582 -1.6672 -1.4109 9 7 2.1504 0.0666 -2.4002 10 6 2.1738 -0.7360 -3.6303 11 6 2.2489 0.1928 -4.8438 12 6 2.2726 -0.6430 -6.1251 13 6 2.3459 0.2718 -7.3204 14 1 2.3733 1.3423 -7.1802 15 6 2.3781 -0.2578 -8.5930 16 7 2.4425 0.5406 -9.6360 17 14 2.3300 -2.1094 -8.8355 18 1 0.9190 -2.5568 -8.9530 19 1 3.0671 -2.4656 -10.0745 20 1 2.9659 -2.7777 -7.6718 21 1 -0.3633 -1.0261 0.0579 22 1 -0.3633 0.5631 0.8596 23 1 -0.3633 0.4629 -0.9175 24 1 1.4579 -1.6716 1.4041 25 1 2.1334 -0.1624 2.0938 26 1 3.7121 -2.2293 1.1386 27 1 4.2332 -0.5212 1.1417 28 1 4.2326 -0.5163 -1.1437 29 1 3.7120 -2.2251 -1.1469 30 1 2.9493 0.6812 -2.3541 31 1 3.0448 -1.3911 -3.6202 32 1 1.2670 -1.3380 -3.6886 33 1 1.3781 0.8483 -4.8541 34 1 3.1558 0.7945 -4.7852 35 1 3.1432 -1.2988 -6.1151 36 1 1.3653 -1.2444 -6.1834 37 1 2.4655 0.1678 -10.5313 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070829708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:08 Heat of formation + Delta-G solvation = -36.738735 kcal Electronic energy + Delta-G solvation = -13941.689495 eV Core-core repulsion = 11717.209369 eV Total energy + Delta-G solvation = -2224.480126 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.94266 -35.42401 -33.09849 -31.30179 -31.20794 -27.78540 -25.89155 -24.40541 -22.09045 -20.51615 -20.30772 -19.58379 -16.68317 -15.87459 -15.46231 -14.67606 -14.37098 -13.91671 -13.91026 -13.23934 -13.09933 -12.63117 -12.27313 -12.16551 -11.84234 -11.47757 -11.28415 -11.06385 -10.91412 -10.75925 -10.66308 -10.58089 -10.52922 -9.91151 -9.69188 -9.50155 -9.13417 -8.50522 -8.10946 -6.00957 -3.98457 3.32819 3.39775 3.43742 4.29376 4.48114 4.51508 4.58622 4.85410 5.20103 5.30093 5.33145 5.39523 5.45834 5.53781 5.55313 5.65833 5.76777 5.83781 5.85944 5.88307 5.99860 6.08816 6.13030 6.22474 6.26809 6.37986 6.60907 6.64907 6.96238 7.30751 7.40130 7.48738 7.65291 7.84085 8.58712 9.04786 9.61885 11.12701 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054903 B = 0.005188 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.871650 B = 5395.508070 C = 5544.904745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.077 0.923 4 C -0.122 4.122 5 C -0.121 4.121 6 C -0.156 4.156 7 C 0.086 3.914 8 H 0.080 0.920 9 N -0.682 5.682 10 C 0.057 3.943 11 C -0.100 4.100 12 C -0.013 4.013 13 C -0.518 4.518 14 H 0.071 0.929 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.267 1.267 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.339 0.661 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 -4.200 20.812 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.159 4.159 6 C -0.196 4.196 7 C -0.024 4.024 8 H 0.098 0.902 9 N -0.312 5.312 10 C -0.072 4.072 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.556 4.556 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.191 1.191 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.157 0.843 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.814 -4.092 20.567 20.985 hybrid contribution 0.980 -1.361 -0.310 1.706 sum 0.166 -5.453 20.257 20.979 Atomic orbital electron populations 1.21686 0.94795 1.01237 1.01862 1.22066 0.95750 0.99228 0.93315 0.90439 1.22450 0.95998 0.99731 0.97836 1.22041 0.97337 1.01004 0.95506 1.22919 0.98753 1.01764 0.96123 1.22522 0.94457 0.95151 0.90313 0.90191 1.60570 1.48285 1.21050 1.01257 1.22151 0.99738 0.95780 0.89484 1.21443 1.01424 0.97927 0.92979 1.19543 0.96047 0.96042 0.93462 1.21163 1.50304 0.94787 0.89367 0.91038 1.25041 0.94661 0.97844 0.96038 1.69923 1.51328 1.34878 0.98323 0.86766 0.78421 0.86420 0.77587 1.20293 1.21437 1.19125 0.93255 0.93308 0.91681 0.91711 0.91832 0.92207 0.92063 0.91738 0.92049 0.84308 0.95894 0.91656 0.91998 0.93100 0.96905 0.97094 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.28 37.16 0.34 -1.09 16 2 C -0.08 -0.89 3.17 -88.58 -0.28 -1.17 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.12 -1.10 6.28 -25.03 -0.16 -1.25 16 5 C -0.12 -1.11 6.80 -25.61 -0.17 -1.28 16 6 C -0.16 -1.70 6.42 -25.62 -0.16 -1.86 16 7 C 0.09 1.04 2.61 -66.05 -0.17 0.87 16 8 H 0.08 1.02 7.78 -51.93 -0.40 0.61 16 9 N -0.68 -9.71 6.34 -104.97 -0.67 -10.38 16 10 C 0.06 0.95 5.53 -3.83 -0.02 0.93 16 11 C -0.10 -2.03 5.41 -26.73 -0.14 -2.17 16 12 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 13 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 14 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 15 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.91 -28.45 13.96 55.43 0.77 -27.67 16 17 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 21 H 0.05 0.49 8.10 -51.93 -0.42 0.06 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.56 8.01 -51.93 -0.42 0.14 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.72 7.57 -51.93 -0.39 0.32 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.34 4.60 8.15 -39.29 -0.32 4.28 16 31 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 36 H 0.01 0.26 7.57 -51.92 -0.39 -0.13 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 293.35 15.07 4.42 4.42 Total: -1.00 -30.26 293.35 -8.41 -38.67 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -6.95 Total: -1.39 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -1.31 Total: -21.12 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.11 Total: -38.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.26 -8.41 -38.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070829708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.928 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds