Wall clock time and date at job start Sun Mar 29 2020 21:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.67583 * 2 1 4 4 C 1.54961 * 110.76665 * 123.40119 * 2 1 3 5 5 C 1.54270 * 104.16191 * 156.22182 * 4 2 1 6 6 C 1.53869 * 106.63967 * 336.44607 * 5 4 2 7 7 C 1.54268 * 106.60115 * 359.97438 * 6 5 4 8 8 H 1.09000 * 110.48806 * 264.79985 * 7 6 5 9 9 N 1.46905 * 110.49065 * 142.28923 * 7 6 5 10 10 C 1.46895 * 110.99825 * 86.45159 * 9 7 6 11 11 C 1.52997 * 109.46778 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47317 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47626 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99873 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00601 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00260 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99670 * 0.02562 * 15 13 12 18 18 H 1.48490 * 109.47357 * 89.99839 * 17 15 13 19 19 H 1.48503 * 109.46936 * 209.99865 * 17 15 13 20 20 H 1.48499 * 109.46940 * 329.99563 * 17 15 13 21 21 H 1.09005 * 109.47018 * 183.23026 * 1 2 3 22 22 H 1.08996 * 109.47051 * 303.23017 * 1 2 3 23 23 H 1.08997 * 109.47118 * 63.22978 * 1 2 3 24 24 H 1.08997 * 110.47708 * 37.56779 * 4 2 1 25 25 H 1.09002 * 110.53308 * 274.90171 * 4 2 1 26 26 H 1.09002 * 110.03399 * 217.13605 * 5 4 2 27 27 H 1.08995 * 110.02943 * 95.75505 * 5 4 2 28 28 H 1.08999 * 110.03405 * 119.26051 * 6 5 4 29 29 H 1.08996 * 110.03529 * 240.68999 * 6 5 4 30 30 H 1.00905 * 110.99274 * 322.50088 * 9 7 6 31 31 H 1.08998 * 109.47702 * 300.00210 * 10 9 7 32 32 H 1.08998 * 109.46942 * 60.00393 * 10 9 7 33 33 H 1.08993 * 109.47577 * 300.00380 * 11 10 9 34 34 H 1.08998 * 109.47074 * 60.00460 * 11 10 9 35 35 H 1.08998 * 109.47417 * 300.00352 * 12 11 10 36 36 H 1.09007 * 109.46858 * 60.00403 * 12 11 10 37 37 H 0.97004 * 119.99411 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0794 -0.7976 1.2096 5 6 3.4932 -1.2282 0.7671 6 6 3.4932 -1.2254 -0.7716 7 6 2.0790 -0.7937 -1.2116 8 1 1.4582 -1.6672 -1.4109 9 7 2.1504 0.0666 -2.4002 10 6 2.1738 -0.7360 -3.6303 11 6 2.2489 0.1928 -4.8438 12 6 2.2726 -0.6430 -6.1251 13 6 2.3459 0.2718 -7.3204 14 1 2.3733 1.3423 -7.1802 15 6 2.3781 -0.2578 -8.5930 16 7 2.4425 0.5406 -9.6360 17 14 2.3300 -2.1094 -8.8355 18 1 0.9190 -2.5568 -8.9530 19 1 3.0671 -2.4656 -10.0745 20 1 2.9659 -2.7777 -7.6718 21 1 -0.3633 -1.0261 0.0579 22 1 -0.3633 0.5631 0.8596 23 1 -0.3633 0.4629 -0.9175 24 1 1.4579 -1.6716 1.4041 25 1 2.1334 -0.1624 2.0938 26 1 3.7121 -2.2293 1.1386 27 1 4.2332 -0.5212 1.1417 28 1 4.2326 -0.5163 -1.1437 29 1 3.7120 -2.2251 -1.1469 30 1 2.9493 0.6812 -2.3541 31 1 3.0448 -1.3911 -3.6202 32 1 1.2670 -1.3380 -3.6886 33 1 1.3781 0.8483 -4.8541 34 1 3.1558 0.7945 -4.7852 35 1 3.1432 -1.2988 -6.1151 36 1 1.3653 -1.2444 -6.1834 37 1 2.4655 0.1678 -10.5313 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070829708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:08 Heat of formation + Delta-G solvation = -55.473084 kcal Electronic energy + Delta-G solvation = -13942.501878 eV Core-core repulsion = 11717.209369 eV Total energy + Delta-G solvation = -2225.292508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85443 -36.86547 -34.98855 -33.00630 -32.10219 -29.21928 -27.14653 -25.49329 -23.68309 -22.05393 -21.16284 -20.69560 -18.89419 -16.83426 -16.65545 -16.27169 -15.84057 -15.23384 -14.81726 -14.73913 -14.27053 -14.14935 -13.72087 -13.47396 -13.03397 -12.84744 -12.54882 -12.51456 -12.11525 -11.93016 -11.78420 -11.65317 -11.49753 -11.42942 -11.38010 -11.29926 -11.08720 -10.76866 -9.23209 -8.29889 -6.34295 1.35515 1.37397 1.49639 2.36091 3.05321 3.22874 3.70013 3.75689 4.00109 4.20996 4.34791 4.39930 4.51297 4.59478 4.62318 4.68010 4.73982 4.78493 4.88637 4.94262 5.00469 5.05251 5.10413 5.12903 5.24764 5.29186 5.34020 5.45107 5.52229 5.58715 5.61280 5.66046 6.19481 6.30136 6.52490 6.73966 7.30393 8.87248 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054903 B = 0.005188 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.871650 B = 5395.508070 C = 5544.904745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.155 4.155 7 C 0.083 3.917 8 H 0.075 0.925 9 N -0.687 5.687 10 C 0.072 3.928 11 C -0.091 4.091 12 C -0.010 4.010 13 C -0.535 4.535 14 H 0.029 0.971 15 C 0.002 3.998 16 N -0.953 5.953 17 Si 0.955 3.045 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.247 1.247 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.044 0.956 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.342 0.658 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.046 0.954 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.063 -6.206 22.708 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.194 4.194 7 C -0.027 4.027 8 H 0.093 0.907 9 N -0.317 5.317 10 C -0.057 4.057 11 C -0.129 4.129 12 C -0.048 4.048 13 C -0.573 4.573 14 H 0.047 0.953 15 C -0.195 4.195 16 N -0.594 5.594 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.170 1.170 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.161 0.839 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.740 -6.090 22.495 23.316 hybrid contribution 0.952 -0.613 -0.900 1.447 sum 0.212 -6.704 21.594 22.612 Atomic orbital electron populations 1.21662 0.94702 1.01564 1.01439 1.22055 0.95813 0.98997 0.93376 0.90969 1.22425 0.95723 0.99876 0.97391 1.22035 0.97683 1.01841 0.94031 1.22883 0.97639 1.01382 0.97537 1.22599 0.95385 0.94895 0.89789 0.90702 1.60524 1.48649 1.21326 1.01211 1.21867 1.00035 0.94904 0.88927 1.21270 1.00601 0.97862 0.93171 1.19489 0.96409 0.95679 0.93216 1.21522 1.50264 0.93778 0.91703 0.95279 1.26070 0.94043 1.03835 0.95504 1.70081 1.52627 1.37610 0.99071 0.85596 0.79177 0.79211 0.78272 1.19054 1.20838 1.17008 0.92761 0.91989 0.93637 0.91108 0.90542 0.91242 0.91419 0.92156 0.92300 0.83939 0.95321 0.91533 0.93355 0.93556 0.96253 0.96343 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.28 71.98 0.67 -1.93 16 2 C -0.08 -1.60 3.17 -9.47 -0.03 -1.63 16 3 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.12 -1.76 6.28 31.70 0.20 -1.56 16 5 C -0.12 -1.84 6.80 31.32 0.21 -1.63 16 6 C -0.15 -3.06 6.42 31.32 0.20 -2.86 16 7 C 0.08 1.87 2.61 45.99 0.12 1.99 16 8 H 0.07 1.77 7.78 -2.39 -0.02 1.75 16 9 N -0.69 -18.79 6.34 -486.03 -3.08 -21.87 16 10 C 0.07 2.29 5.53 86.30 0.48 2.77 16 11 C -0.09 -3.68 5.41 30.59 0.17 -3.52 16 12 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 13 C -0.53 -31.94 9.66 25.60 0.25 -31.69 16 14 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 15 C 0.00 0.11 5.47 84.65 0.46 0.58 16 16 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 17 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 21 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.01 8.01 -2.39 -0.02 0.99 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.24 7.57 -2.39 -0.02 1.22 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.34 8.96 8.15 -89.69 -0.73 8.23 16 31 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 32 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 36 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 37 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -65.31 293.35 2.16 -63.15 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.22 Total: 12.48 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 2.85 Total: -39.83 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -2.78 Total: -82.76 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -65.31 2.16 -63.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070829708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.674 kcal (2) G-P(sol) polarization free energy of solvation -65.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds